Carg09585 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09585
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	methyl-CpG-binding domain-containing protein 11-like
Location	Carg_Chr17: 6965048 .. 6966230 (+)
RNA-Seq Expression	Carg09585
Synteny	Carg09585

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTGTGGATGGATGATTATTTGACGATCGAAGGCGTTTACAAAGCGTACTGAAGACGAACGATTTCTTCGAGCGAGTGAAAGAAAGATGATTAAGGAAGATCTTCAAAGCCCAGTTGAAGGAGCTAAACATGAAGTACCTTTTTCAAGCTTGGAAGAAATGGTGTTTCTCACTCTCTTTTCTCTTCTAACTTCTCGTTTTTAAGCTTTCGACTCTTGTTTTTATGTTGATTCTGTATCTGTGTCTCTAATTTTTGCTTGAATTTCATTTTCTTTGGTAAATTATACTCTGAAATTTGCTTTCTGCTGAGTTCTTAGTTCTAGGGTTCTTCGATGTAATCGCTCTTTGCCGTTGCAGGGCTTTATGATTAGGATTTTCCCTTATTTAGGATGCATTTGGATTTGAAATTTGCTGCTTATGGTGATGGTTTCTGCGTTTCTGATGCTATTTTTCTGCCTTTCGGAGTGTTTTCTGTCGGTATCTTTGGTTCCGCCGCTGCTCCTCTGCATCACAGGGGAGGAGTAATGGCAATAAATGTTTCAAGCCGTGATTTCAGGCACATGGAGAAAGAAGTCTGATTATGTAATAAGGAATGAAGACGAGGGATTGATAGTTTCAAACTTAAGCTTTGGCCCGTAGATTCATCCTAGAACGAGGTCCATTTTCTGAAGTAATTTGTTGATTCTTCCATAGTTTTGCATAGAGAACTTCCCAATATTGTTTTGAATGATATACAAAAATCACCCATGCTTTTCTTTACAAAACTAATGTTTCTCCAATGGCTGCAATTGTGAAATTGTGATATTTCATGTTTTCAGTTCTTGCTAAGAATTACGACCCTCCATGTGGTATGACATTGTCCACTTTGAGTATAAGCTCTCGAGGCTTTGCTTTTGGCTTACCCAAAAAGGCCTCATGCCAATGGAGCCTTACGCTCATGATCATTCCTACCTTAGTCAAGAAGGGAGGAACACCAAGGAAGAATGATATTATGTTCGTAGCACCCACGGGCGAGGAGATCAGTAATAGAAAACAGCTTGAGCAGTACTTGAAATCGCATTCCGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTGTAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACCACAGGAAGAGCCTCCATGGAAACGAGTGA

mRNA sequence

AGTTGTGGATGGATGATTATTTGACGATCGAAGGCGTTTACAAAGCGTACTGAAGACGAACGATTTCTTCGAGCGAGTGAAAGAAAGATGATTAAGGAAGATCTTCAAAGCCCAGTTGAAGGAGCTAAACATGAAGTACCTTTTTCAAGCTTGGAAGAAATGTACTTGAAATCGCATTCCGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTGTAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACCACAGGAAGAGCCTCCATGGAAACGAGTGA

Coding sequence (CDS)

ATGATTAAGGAAGATCTTCAAAGCCCAGTTGAAGGAGCTAAACATGAAGTACCTTTTTCAAGCTTGGAAGAAATGTACTTGAAATCGCATTCCGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTGTAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACCACAGGAAGAGCCTCCATGGAAACGAGTGA

Protein sequence

MIKEDLQSPVEGAKHEVPFSSLEEMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE

Homology

[Close]

BLAST of Carg09585 vs. NCBI nr
Match: KAG7014138.1 (Methyl-CpG-binding domain-containing protein 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MIKEDLQSPVEGAKHEVPFSSLEEMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQL 60
          MIKEDLQSPVEGAKHEVPFSSLEEMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQL
Sbjct: 1  MIKEDLQSPVEGAKHEVPFSSLEEMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQL 60

Query: 61 HHRKSLHGNE 71
          HHRKSLHGNE
Sbjct: 61 HHRKSLHGNE 70

[Close]

BLAST of Carg09585 vs. NCBI nr
Match: KAG6575596.1 (Methyl-CpG-binding domain-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 24 EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE 71
          E YLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE
Sbjct: 17 EQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE 63

[Close]

BLAST of Carg09585 vs. NCBI nr
Match: XP_023004316.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 24  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
           E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 69  EQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Carg09585 vs. NCBI nr
Match: XP_023004320.1 (methyl-CpG-binding domain-containing protein 11-like isoform X5 [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 24  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
           E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 69  EQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Carg09585 vs. NCBI nr
Match: XP_023514327.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 24  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
           E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 69  EQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Carg09585 vs. ExPASy Swiss-Prot
Match: Q9LW00 (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 24 EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
          E YLKSH  + A+++FDW+T  TPRRSARISEK K
Sbjct: 52 EQYLKSHPGNPAIAEFDWTTSGTPRRSARISEKTK 86

[Close]

BLAST of Carg09585 vs. ExPASy Swiss-Prot
Match: Q9XI36 (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-05
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 24 EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
          E YLK+H  +  +S+F+W+TG TPRRS+RIS+K K
Sbjct: 52 EQYLKAHPGNPVISEFEWTTGETPRRSSRISQKVK 86

[Close]

BLAST of Carg09585 vs. ExPASy TrEMBL
Match: A0A6J1KVX9 (methyl-CpG-binding domain-containing protein 11-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 24  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
           E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 69  EQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Carg09585 vs. ExPASy TrEMBL
Match: A0A6J1KZ45 (methyl-CpG-binding domain-containing protein 11-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 24  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
           E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 69  EQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Carg09585 vs. ExPASy TrEMBL
Match: A0A6J1KU91 (methyl-CpG-binding domain-containing protein 11-like isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 24  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
           E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 69  EQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Carg09585 vs. ExPASy TrEMBL
Match: A0A6J1KRS8 (methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 24  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
           E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 69  EQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Carg09585 vs. ExPASy TrEMBL
Match: A0A6J1KQ36 (methyl-CpG-binding domain-containing protein 11-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 24  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
           E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Sbjct: 69  EQYLKSHSVDVALSDFDWSTGETPRRSARISEKAK 103

[Close]

BLAST of Carg09585 vs. TAIR 10
Match: AT3G15790.1 (methyl-CPG-binding domain 11 )

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 24 EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
          E YLKSH  + A+++FDW+T  TPRRSARISEK K
Sbjct: 52 EQYLKSHPGNPAIAEFDWTTSGTPRRSARISEKTK 86

[Close]

BLAST of Carg09585 vs. TAIR 10
Match: AT1G15340.1 (methyl-CPG-binding domain 10 )

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 24 EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK 59
          E YLK+H  +  +S+F+W+TG TPRRS+RIS+K K
Sbjct: 52 EQYLKAHPGNPVISEFEWTTGETPRRSSRISQKVK 86

The following BLAST results are available for this feature:

BLAST of Carg09585 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014138.1	1.4e-30	100.00	Methyl-CpG-binding domain-containing protein 11 [Cucurbita argyrosperma subsp. a...	[more]
KAG6575596.1	1.1e-16	97.87	Methyl-CpG-binding domain-containing protein 11, partial [Cucurbita argyrosperma...	[more]
XP_023004316.1	2.8e-07	88.57	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita maxim...	[more]
XP_023004320.1	2.8e-07	88.57	methyl-CpG-binding domain-containing protein 11-like isoform X5 [Cucurbita maxim...	[more]
XP_023514327.1	2.8e-07	88.57	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita pepo ...	[more]

BLAST of Carg09585 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW00	4.2e-06	65.71	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9XI36	2.7e-05	57.14	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg09585 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVX9	1.3e-07	88.57	methyl-CpG-binding domain-containing protein 11-like isoform X4 OS=Cucurbita max...	[more]
A0A6J1KZ45	1.3e-07	88.57	methyl-CpG-binding domain-containing protein 11-like isoform X3 OS=Cucurbita max...	[more]
A0A6J1KU91	1.3e-07	88.57	methyl-CpG-binding domain-containing protein 11-like isoform X5 OS=Cucurbita max...	[more]
A0A6J1KRS8	1.3e-07	88.57	methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita max...	[more]
A0A6J1KQ36	1.3e-07	88.57	methyl-CpG-binding domain-containing protein 11-like isoform X2 OS=Cucurbita max...	[more]

BLAST of Carg09585 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15790.1	3.0e-07	65.71	methyl-CPG-binding domain 11	[more]
AT1G15340.1	1.9e-06	57.14	methyl-CPG-binding domain 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..70
None	No IPR available	PANTHER	PTHR33729:SF6	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11-LIKE	coord: 24..61
IPR039622	Methyl-CpG-binding domain-containing protein 10/11	PANTHER	PTHR33729	METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 24..61
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 25..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09585-RA	Carg09585-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding