Carg09583 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09583
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionEpidermal patterning factor-like protein
LocationCarg_Chr17: 6956399 .. 6957698 (+)
RNA-Seq ExpressionCarg09583
SyntenyCarg09583
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTCAGAGCAACAGTTCCCCAAAACCAAGCCAAGTAAGTGAATGCTCCCTTTTTGGCATCACCCTTCCTCTCTTCTATTTATGTCTCTTCCGAACCCGACATGTCTTAACCTTGTCCACTGAAGGCTCAACCCTTTCATAATGGCTATGCCATTCCTCAAACTGGCTATTGTTCTTGCTGTGTTCTTCTTCTTCTTCTCACCTGTTCCTCCTAAGTCAGGTAATGATGCATTCAATCTCACATCTCTGGTTCTGTTATTCACTTCTAAGGACCCTTTTGTTCTTGCGTCCAGTTGGGTTGGTTTTGGAGGCAAACATGAAGATTGGTTCACGGCCGCCGGGATGTGTGAATAAATGCATGAGTTGTAGGCCGTGCATGGCGGCGGCGGCGGCGGTGGTGGTGCCGGTGCATAAGATGAAGGGGAAGGCCTTCAATGCCATTGCTTCCTCTCGGGAGGAAGAGGGTAGCTATTATCTTCTCTCGTGGAAATGCCAATGTGGGAATAAGATCTATCAACCCTAGCCTACCAATGCGAGTTAAACTTGAGGAGAGGCTCATAAGTGAAAACTTAAACTTGAGGAGAGGCTCGGAAAAGTCCAAACAAGACAATATCTGTTAGTTGTGGACTTGGGACTGTTACAACTTACAAGTTTTATCCGTCTCGTCTTTTAATCAAAAGTATGTTTAAATTATTTGAGGTATCAAAAAGTAGTTCAAGTATGTAAATTTTTTATACCGATTTTCTTTTATATTTATTTAATGATAAAATTTTATATAGTTCGATAGATAAAACACTGATTATTATTTTAAACTTCGATGCATCTGACCTTATGGTGTTGAACTCAAAAGAAACTATTATTATTTATATATATATTTTAATTTTAATATATTAAATTTGCATTATTTTGATCAATTTGGGCCGAGTTAGCCCATACAATCCAGCAAGGCGACTTACTGGATTTGGGCCGGCCCATGTGGCTTAAGCCCTTAATGGAAAGGAATAAGTAATAAGTGAACAGAGAAATGGAATCGGAGTTGATGCTTCCATGCTCGGCTAATGGCAACGTTCTCTAGCTCTCTGCAACATTCTTCACAGTTCGTTCCCGCCTTTTCTCTCTGTTCATGCTTCCATACTCGGCTGGAAATCGGCTTCTCTTCGCTTCCTTGAGCTGCATCCGCCGTGTGTAGCGCAGCAATACGGCGGCCACCAGACTCCGATCCGCCTTCCGAGAAGGATCTGTTCGTCTAATAGGTTCCTTTTCGTTGCTGATGTTATCTCCATTTTATTTGCTTAA

mRNA sequence

ATGAAGGTCAGAGCAACAGTTCCCCAAAACCAAGCCAAGCTCAACCCTTTCATAATGGCTATGCCATTCCTCAAACTGGCTATTGTTCTTGCTGTGTTCTTCTTCTTCTTCTCACCTGTTCCTCCTAAGTCAGTTGGGTTGGTTTTGGAGGCAAACATGAAGATTGGTTCACGGCCGCCGGGATGTGTGAATAAATGCATGAGTTGTAGGCCGTGCATGGCGGCGGCGGCGGCGGTGGTGGTGCCGGTGCATAAGATGAAGGGGAAGGCCTTCAATGCCATTGCTTCCTCTCGGGAGGAAGAGGCTCTCTGCAACATTCTTCACAGTTCGTTCCCGCCTTTTCTCTCTGTTCATGCTTCCATACTCGGCTGGAAATCGGCTTCTCTTCGCTTCCTTGAGCTGCATCCGCCGTGTGTAGCGCAGCAATACGGCGGCCACCAGACTCCGATCCGCCTTCCGAGAAGGATCTGTTCGTCTAATAGGTTCCTTTTCGTTGCTGATGTTATCTCCATTTTATTTGCTTAA

Coding sequence (CDS)

ATGAAGGTCAGAGCAACAGTTCCCCAAAACCAAGCCAAGCTCAACCCTTTCATAATGGCTATGCCATTCCTCAAACTGGCTATTGTTCTTGCTGTGTTCTTCTTCTTCTTCTCACCTGTTCCTCCTAAGTCAGTTGGGTTGGTTTTGGAGGCAAACATGAAGATTGGTTCACGGCCGCCGGGATGTGTGAATAAATGCATGAGTTGTAGGCCGTGCATGGCGGCGGCGGCGGCGGTGGTGGTGCCGGTGCATAAGATGAAGGGGAAGGCCTTCAATGCCATTGCTTCCTCTCGGGAGGAAGAGGCTCTCTGCAACATTCTTCACAGTTCGTTCCCGCCTTTTCTCTCTGTTCATGCTTCCATACTCGGCTGGAAATCGGCTTCTCTTCGCTTCCTTGAGCTGCATCCGCCGTGTGTAGCGCAGCAATACGGCGGCCACCAGACTCCGATCCGCCTTCCGAGAAGGATCTGTTCGTCTAATAGGTTCCTTTTCGTTGCTGATGTTATCTCCATTTTATTTGCTTAA

Protein sequence

MKVRATVPQNQAKLNPFIMAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEEALCNILHSSFPPFLSVHASILGWKSASLRFLELHPPCVAQQYGGHQTPIRLPRRICSSNRFLFVADVISILFA
Homology
[Close]
BLAST of Carg09583 vs. NCBI nr
Match: KAG7014136.1 (hypothetical protein SDJN02_24309, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.8 bits (891), Expect = 5.3e-92
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MKVRATVPQNQAKLNPFIMAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPP 60
           MKVRATVPQNQAKLNPFIMAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPP
Sbjct: 1   MKVRATVPQNQAKLNPFIMAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPP 60

Query: 61  GCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEEALCNILHSSFPPFLSVHAS 120
           GCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEEALCNILHSSFPPFLSVHAS
Sbjct: 61  GCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEEALCNILHSSFPPFLSVHAS 120

Query: 121 ILGWKSASLRFLELHPPCVAQQYGGHQTPIRLPRRICSSNRFLFVADVISILFA 175
           ILGWKSASLRFLELHPPCVAQQYGGHQTPIRLPRRICSSNRFLFVADVISILFA
Sbjct: 121 ILGWKSASLRFLELHPPCVAQQYGGHQTPIRLPRRICSSNRFLFVADVISILFA 174

[Close]
BLAST of Carg09583 vs. NCBI nr
Match: KAG6575594.1 (hypothetical protein SDJN03_26233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.0 bits (502), Expect = 6.8e-47
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MKVRATVPQNQAKLNPFIMAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPP 60
           MKVRATVPQNQAKLNPFIMAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPP
Sbjct: 1   MKVRATVPQNQAKLNPFIMAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPP 60

Query: 61  GCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE 102
           GCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE
Sbjct: 61  GCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE 101

[Close]
BLAST of Carg09583 vs. NCBI nr
Match: XP_022953925.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita moschata])

HSP 1 Score: 155.2 bits (391), Expect = 5.1e-34
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 19  MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAAA 78
           MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAA 
Sbjct: 1   MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAA- 60

Query: 79  VVVPVHKMKGKAFNAIASSREEE 102
            VVPVHKMKGKAFNAIASSREEE
Sbjct: 61  -VVPVHKMKGKAFNAIASSREEE 81

[Close]
BLAST of Carg09583 vs. NCBI nr
Match: XP_022991788.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita maxima])

HSP 1 Score: 148.3 bits (373), Expect = 6.2e-32
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 19  MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAAA 78
           MAMPFLKLAIVLAVFFFFFS VPPKSVGLVLEANMKIGSRPPGC +KCMSCRPCMAAAA 
Sbjct: 1   MAMPFLKLAIVLAVFFFFFSAVPPKSVGLVLEANMKIGSRPPGCFHKCMSCRPCMAAAA- 60

Query: 79  VVVPVHKMKGKAFNAIASSREEE 102
            VVPVHKMKGKAFNAIASSREEE
Sbjct: 61  -VVPVHKMKGKAFNAIASSREEE 81

[Close]
BLAST of Carg09583 vs. NCBI nr
Match: XP_023548448.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-30
Identity = 77/85 (90.59%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 19  MAMPFLKLAIVLAVF---FFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAA 78
           MAMPFLKL IVLAVF   FFFFS VPPKSVGL+LE NMKIGSRPPGCVNKCMSCRPCMAA
Sbjct: 1   MAMPFLKLPIVLAVFFFIFFFFSAVPPKSVGLILEENMKIGSRPPGCVNKCMSCRPCMAA 60

Query: 79  AAAVVVPVHKMKGKAFNAIASSREE 101
           AAA VVPVHKMKGKAFNAIASSREE
Sbjct: 61  AAA-VVPVHKMKGKAFNAIASSREE 84

[Close]
BLAST of Carg09583 vs. ExPASy TrEMBL
Match: A0A6J1GR07 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456330 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.5e-34
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 19  MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAAA 78
           MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAA 
Sbjct: 1   MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAA- 60

Query: 79  VVVPVHKMKGKAFNAIASSREEE 102
            VVPVHKMKGKAFNAIASSREEE
Sbjct: 61  -VVPVHKMKGKAFNAIASSREEE 81

[Close]
BLAST of Carg09583 vs. ExPASy TrEMBL
Match: A0A6J1JXA0 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111488325 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.0e-32
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 19  MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAAA 78
           MAMPFLKLAIVLAVFFFFFS VPPKSVGLVLEANMKIGSRPPGC +KCMSCRPCMAAAA 
Sbjct: 1   MAMPFLKLAIVLAVFFFFFSAVPPKSVGLVLEANMKIGSRPPGCFHKCMSCRPCMAAAA- 60

Query: 79  VVVPVHKMKGKAFNAIASSREEE 102
            VVPVHKMKGKAFNAIASSREEE
Sbjct: 61  -VVPVHKMKGKAFNAIASSREEE 81

[Close]
BLAST of Carg09583 vs. ExPASy TrEMBL
Match: A0A0A0K6C2 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G432570 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 59/107 (55.14%), Postives = 66/107 (61.68%), Query Frame = 0 

Query: 19  MAMPF-----LKLAIVLAVFFFFFSPVPPKSVGLV-------------------LEANMK 78
           MA+P      LKLA+ LA FF F   +PP SVGLV                   LE  M 
Sbjct: 1   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSELGKAENDEMKNLEEKMV 60

Query: 79  IGSRPPGCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE 102
           IGSRPPGC NKCM+CRPCMAAA   VVPVH+MKGKAF + +SSREEE
Sbjct: 61  IGSRPPGCQNKCMNCRPCMAAA---VVPVHRMKGKAFQSFSSSREEE 101

[Close]
BLAST of Carg09583 vs. ExPASy TrEMBL
Match: A0A1S3CDZ4 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103499797 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 0 

Query: 19  MAMPF-----LKLAIVLAVFFFFFSPVPPKSVGLVL-------------------EANMK 78
           MA+P      LKLA+ LA FF F   +PP SVGLVL                   +  M 
Sbjct: 3   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSEGKADNDEMKFLEDQKMV 62

Query: 79  IGSRPPGCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE 102
           IGSRPPGC NKCM+CRPCMAAA   VVPVH+MKGKAF + +SSREEE
Sbjct: 63  IGSRPPGCQNKCMNCRPCMAAA---VVPVHRMKGKAFQSFSSSREEE 103

[Close]
BLAST of Carg09583 vs. ExPASy TrEMBL
Match: A0A5D3CGR2 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002030 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.7e-15
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 0 

Query: 19  MAMPF-----LKLAIVLAVFFFFFSPVPPKSVGLVLEAN-------------------MK 78
           MA+P      LKLA+ LA FF F   +PP SVGLVL  +                   M 
Sbjct: 3   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSEGKADNDEMKILENQKMV 62

Query: 79  IGSRPPGCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE 102
           IGSRPPGC NKCM+CRPCMAAA   VVPVH+MKGKAF + +SSREEE
Sbjct: 63  IGSRPPGCRNKCMNCRPCMAAA---VVPVHRMKGKAFQSFSSSREEE 103

The following BLAST results are available for this feature:
BLAST of Carg09583 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014136.15.3e-92100.00hypothetical protein SDJN02_24309, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6575594.16.8e-47100.00hypothetical protein SDJN03_26233, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022953925.15.1e-3497.59EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita moschata][more]
XP_022991788.16.2e-3293.98EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita maxima][more]
XP_023548448.13.4e-3090.59EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg09583 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09583 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GR072.5e-3497.59Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1JXA03.0e-3293.98Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A0A0K6C21.5e-1555.14Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G432... [more]
A0A1S3CDZ43.3e-1554.21Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103499797... [more]
A0A5D3CGR25.7e-1554.21Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Carg09583 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 54..77
e-value: 6.9E-9
score: 35.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09583-RACarg09583-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
cellular_component GO:0005576 extracellular region