Carg09356 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09356
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ethylene-responsive transcription factor ERF003-like
Location	Carg_Chr05: 1684311 .. 1685193 (-)
RNA-Seq Expression	Carg09356
Synteny	Carg09356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCTGTGGGACCGATCAATATTGACCCAAATTGCTTGCCAGTGCAGTCTTTGGAAAATGCCCATCAATTTCTCTACTTAAACCCCCTCTTCCCACTTCCATTCACAACCTCTCGCTCTCCGCTCACCATGCCCAGACCACAACAAAGATTCCGCGGCGTCCGACAGCGCCATTGGGGCTCATGGGTCTCCGAAATTCGCCATCCTTTATTGTAAGTCCATTCTCCTAGCTTTAAAGTAAGCCCATTCGCCATCCTTTTTGTTCACTGATTTTTGTTCATACAGGAAGACTAGAATTTGGTTGGGCACGTTCGAGACGGCCGAAGACGCAGCGCGCGCATACGACGAGGCCGCGCGCCTCATGTGCGGGCCGAGGGCGCGCACTAACTTCCCTTACGACGCCTCTCTGTCCCGCTCCTCATCTTCCCGCCTTCTCTCGGCTACTCTAACCGCCAAGCTTCACCGCTGCTACATGGCGTCGTTGCAACTCACCAAGCAATCCTCCTCTGCCACACGTCGCCCTCAAACCGACACAATCCGAACCGATTTTTCCGTGACATCCGGCATTGCTCCCGTCGGTGTGGAAACCGACGTGACGTCAACGAAGAAAGTCAAACTAGAGAGCGTGGATCGCGGTGAGCCGTTGGATGATGATCATATTCAGCAGATGATCGATGAGCTGCTTGATTACGGCGGAATTGAGCTCCGTTCCGCCGCCGGACTGCAGGCTCAGCCCATTTGACATTCAACCATAAATCTCCGCCTCTAATTATGTACAAAATATCAATTAATTTAGCTAATTTAATTAACGACCCGACTTTTGATCATTTGAGGTCATTATTTCCTCTTGGCCAACCCAGATTTGTTTCTCTCTGGTTTGGCC

mRNA sequence

CACCCTGTGGGACCGATCAATATTGACCCAAATTGCTTGCCAGTGCAGTCTTTGGAAAATGCCCATCAATTTCTCTACTTAAACCCCCTCTTCCCACTTCCATTCACAACCTCTCGCTCTCCGCTCACCATGCCCAGACCACAACAAAGATTCCGCGGCGTCCGACAGCGCCATTGGGGCTCATGGGTCTCCGAAATTCGCCATCCTTTATTGAAGACTAGAATTTGGTTGGGCACGTTCGAGACGGCCGAAGACGCAGCGCGCGCATACGACGAGGCCGCGCGCCTCATGTGCGGGCCGAGGGCGCGCACTAACTTCCCTTACGACGCCTCTCTGTCCCGCTCCTCATCTTCCCGCCTTCTCTCGGCTACTCTAACCGCCAAGCTTCACCGCTGCTACATGGCGTCGTTGCAACTCACCAAGCAATCCTCCTCTGCCACACGTCGCCCTCAAACCGACACAATCCGAACCGATTTTTCCGTGACATCCGGCATTGCTCCCGTCGGTGTGGAAACCGACGTGACGTCAACGAAGAAAGTCAAACTAGAGAGCGTGGATCGCGGTGAGCCGTTGGATGATGATCATATTCAGCAGATGATCGATGAGCTGCTTGATTACGGCGGAATTGAGCTCCGTTCCGCCGCCGGACTGCAGGCTCAGCCCATTTGACATTCAACCATAAATCTCCGCCTCTAATTATGTACAAAATATCAATTAATTTAGCTAATTTAATTAACGACCCGACTTTTGATCATTTGAGGTCATTATTTCCTCTTGGCCAACCCAGATTTGTTTCTCTCTGGTTTGGCC

Coding sequence (CDS)

CACCCTGTGGGACCGATCAATATTGACCCAAATTGCTTGCCAGTGCAGTCTTTGGAAAATGCCCATCAATTTCTCTACTTAAACCCCCTCTTCCCACTTCCATTCACAACCTCTCGCTCTCCGCTCACCATGCCCAGACCACAACAAAGATTCCGCGGCGTCCGACAGCGCCATTGGGGCTCATGGGTCTCCGAAATTCGCCATCCTTTATTGAAGACTAGAATTTGGTTGGGCACGTTCGAGACGGCCGAAGACGCAGCGCGCGCATACGACGAGGCCGCGCGCCTCATGTGCGGGCCGAGGGCGCGCACTAACTTCCCTTACGACGCCTCTCTGTCCCGCTCCTCATCTTCCCGCCTTCTCTCGGCTACTCTAACCGCCAAGCTTCACCGCTGCTACATGGCGTCGTTGCAACTCACCAAGCAATCCTCCTCTGCCACACGTCGCCCTCAAACCGACACAATCCGAACCGATTTTTCCGTGACATCCGGCATTGCTCCCGTCGGTGTGGAAACCGACGTGACGTCAACGAAGAAAGTCAAACTAGAGAGCGTGGATCGCGGTGAGCCGTTGGATGATGATCATATTCAGCAGATGATCGATGAGCTGCTTGATTACGGCGGAATTGAGCTCCGTTCCGCCGCCGGACTGCAGGCTCAGCCCATTTGA

Protein sequence

HPVGPINIDPNCLPVQSLENAHQFLYLNPLFPLPFTTSRSPLTMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTSGIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI

Homology

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BLAST of Carg09356 vs. NCBI nr
Match: KAG7029486.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 443.4 bits (1139), Expect = 1.2e-120
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   HPVGPINIDPNCLPVQSLENAHQFLYLNPLFPLPFTTSRSPLTMPRPQQRFRGVRQRHWG 60
           HPVGPINIDPNCLPVQSLENAHQFLYLNPLFPLPFTTSRSPLTMPRPQQRFRGVRQRHWG
Sbjct: 1   HPVGPINIDPNCLPVQSLENAHQFLYLNPLFPLPFTTSRSPLTMPRPQQRFRGVRQRHWG 60

Query: 61  SWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRL 120
           SWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRL
Sbjct: 61  SWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRL 120

Query: 121 LSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTSGIAPVGVETDVTSTKKV 180
           LSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTSGIAPVGVETDVTSTKKV
Sbjct: 121 LSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTSGIAPVGVETDVTSTKKV 180

Query: 181 KLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 223
           KLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI
Sbjct: 181 KLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 222

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BLAST of Carg09356 vs. NCBI nr
Match: KAG6598552.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.7 bits (901), Expect = 4.7e-93
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 120

Query: 164 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 223
           GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI
Sbjct: 121 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 179

[Close]

BLAST of Carg09356 vs. NCBI nr
Match: XP_022962278.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita moschata])

HSP 1 Score: 349.7 bits (896), Expect = 1.8e-92
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSA RRPQTDTIRTDFSVTS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120

Query: 164 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 223
           GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI
Sbjct: 121 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 179

[Close]

BLAST of Carg09356 vs. NCBI nr
Match: XP_023546749.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.1 bits (889), Expect = 1.2e-91
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSA RRPQTDTIRTD SVTS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDVSVTS 120

Query: 164 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 223
           GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI
Sbjct: 121 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 179

[Close]

BLAST of Carg09356 vs. NCBI nr
Match: XP_022996634.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita maxima])

HSP 1 Score: 346.3 bits (887), Expect = 2.0e-91
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSA RRPQTDTIRTDFSVTS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120

Query: 164 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 223
           GIAPVGVE DVTSTKKVKLESVDRGEPLDDDHIQQMI+ELLDYGGIELRSAAGLQAQPI
Sbjct: 121 GIAPVGVEADVTSTKKVKLESVDRGEPLDDDHIQQMIEELLDYGGIELRSAAGLQAQPI 179

[Close]

BLAST of Carg09356 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.1e-55
Identity = 117/182 (64.29%), Postives = 137/182 (75.27%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           M RPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPY+ +   +SSS+LLSATLTAKLH+CYMASLQ+TKQ+ + T   QT T R+  + + 
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQT---QTQTARSQSADSD 120

Query: 164 GIA--PVGVETDVTSTKKVKLESVDRG-----EPLDDDHIQQMIDELLDYGGIELRSAAG 219
           G+      +   VT T ++K E  +        PL++DHI+QMI+ELL YG IEL S   
Sbjct: 121 GVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLP 179

[Close]

BLAST of Carg09356 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.6e-43
Identity = 101/167 (60.48%), Postives = 119/167 (71.26%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           M RPQQR+RG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG RAR
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPY+ + S+SSSS+LLSATL AKLHRCYMASLQ+T+  SS    P+   I +  +   
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLIAKLHRCYMASLQMTR-PSSLPEAPR--IIASPNNAVK 120

Query: 164 GIA------PVGVETDVTST------KKVKLESVDRGEPLDDDHIQQ 199
           GI       P   E +   T      KKVK+E   + +PL++DHI Q
Sbjct: 121 GIGADAMLLPKKREQEEQETGGNLDFKKVKVECSQQFKPLEEDHIAQ 164

[Close]

BLAST of Carg09356 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.4e-25
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 49  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 108
           ++FRGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 109 D-----------------ASLSRSSSSRLLSATLTAKLHRC 133
           +                 +++S S+SS  LS+ L+AKL +C
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]

BLAST of Carg09356 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-21
Identity = 76/177 (42.94%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 49  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 108
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 109 DASLSRSS--------SSRLLSATLTAKLHR-C-----YMASLQLTKQSSSATRRPQTDT 168
             S   +S        S + LS  L AKL + C     Y+  L+L   SS      +   
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 169 IRTDFSVTSGIAPVGVETDV-----TSTKKVKLESVDRGEPLDDDHIQQMIDELLDY 207
            +T  +    +  +G + +        T K+K+ + D  E  DD    QMI+ELL++
Sbjct: 125 SKTSPNWVK-LVELGDKVNARPGGDIETNKMKVRNEDVQE--DDQMAMQMIEELLNW 178

[Close]

BLAST of Carg09356 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 74/186 (39.78%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 49  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 108
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 109 DASLSRSS----------SSRLLSATLTAKLHRC------YMASLQLTKQSS-------- 168
             S   S           S + LS  L AKL +        +  L+L   SS        
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGVWQKR 124

Query: 169 SATRRPQTDTIRTDFSVTSGIAPVGVETDVTSTKKVKLESVDRGEPL---DDDHI-QQMI 207
           + ++   T  +R +    + +    V+  +T+  K  +E  +  E     D+D +  +MI
Sbjct: 125 AGSKTSPTWVMRLELG--NVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAMEMI 184

[Close]

BLAST of Carg09356 vs. ExPASy TrEMBL
Match: A0A6J1HED1 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=3662 GN=LOC111462772 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.7e-93
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSA RRPQTDTIRTDFSVTS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120

Query: 164 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 223
           GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI
Sbjct: 121 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 179

[Close]

BLAST of Carg09356 vs. ExPASy TrEMBL
Match: A0A6J1K9A3 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661 GN=LOC111491817 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 9.6e-92
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSA RRPQTDTIRTDFSVTS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120

Query: 164 GIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 223
           GIAPVGVE DVTSTKKVKLESVDRGEPLDDDHIQQMI+ELLDYGGIELRSAAGLQAQPI
Sbjct: 121 GIAPVGVEADVTSTKKVKLESVDRGEPLDDDHIQQMIEELLDYGGIELRSAAGLQAQPI 179

[Close]

BLAST of Carg09356 vs. ExPASy TrEMBL
Match: A0A1S3BD40 (ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=LOC103488338 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.5e-78
Identity = 162/196 (82.65%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 31  FPLPFTTSRSPL--------TMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFET 90
           FP+P +   + L        TMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFET
Sbjct: 20  FPIPTSNIHNTLNFPLTLFFTMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFET 79

Query: 91  AEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ 150
           AEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ
Sbjct: 80  AEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ 139

Query: 151 SSSATRRPQTDTIRTDFSVTSGIAP-VGVETDVTSTKKVKLESVDRGEP-----LDDDHI 210
           SSSA RRPQTD IRTDFSV SGIAP   VE D T+ KKVK+ESVD GEP     LDDDHI
Sbjct: 140 SSSAARRPQTDVIRTDFSVASGIAPGERVEVDGTTAKKVKMESVDCGEPLMIEMLDDDHI 199

Query: 211 QQMIDELLDYGGIELR 213
           QQMI+ELLDYGGIELR
Sbjct: 200 QQMIEELLDYGGIELR 215

[Close]

BLAST of Carg09356 vs. ExPASy TrEMBL
Match: A0A5A7VHF4 (Ethylene-responsive transcription factor ERF003-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002150 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.0e-77
Identity = 157/175 (89.71%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSA RRPQTD IRTDFSV S
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 164 GIAP-VGVETDVTSTKKVKLESVDRGEP-----LDDDHIQQMIDELLDYGGIELR 213
           GIAP   VE D T+ KKVK+ESVD GEP     LDDDHIQQMI+ELLDYGGIELR
Sbjct: 121 GIAPGERVEVDGTTAKKVKMESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

[Close]

BLAST of Carg09356 vs. ExPASy TrEMBL
Match: A0A0A0LSL8 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G382540 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.7e-76
Identity = 154/175 (88.00%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPYDASLSRSSSSRLLSATLTAKLHRCY+AS+QLTKQSSSA RRPQTD IRTDFSV S
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYVASMQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 164 GIAPV-GVETDVTSTKKVKLESVDRGEP-----LDDDHIQQMIDELLDYGGIELR 213
           GIAPV  VE D  + KKVK+ESVD  EP     LDDDHIQQMI+ELLDYGGIELR
Sbjct: 121 GIAPVERVEVDTMTAKKVKMESVDCEEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

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BLAST of Carg09356 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 216.1 bits (549), Expect = 2.9e-56
Identity = 117/182 (64.29%), Postives = 137/182 (75.27%), Query Frame = 0


Query: 44  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 103
           M RPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 104 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSATRRPQTDTIRTDFSVTS 163
           TNFPY+ +   +SSS+LLSATLTAKLH+CYMASLQ+TKQ+ + T   QT T R+  + + 
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQT---QTQTARSQSADSD 120

Query: 164 GIA--PVGVETDVTSTKKVKLESVDRG-----EPLDDDHIQQMIDELLDYGGIELRSAAG 219
           G+      +   VT T ++K E  +        PL++DHI+QMI+ELL YG IEL S   
Sbjct: 121 GVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLP 179

[Close]

BLAST of Carg09356 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-26
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 49  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 108
           ++FRGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 109 D-----------------ASLSRSSSSRLLSATLTAKLHRC 133
           +                 +++S S+SS  LS+ L+AKL +C
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]

BLAST of Carg09356 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 76/177 (42.94%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 49  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 108
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 109 DASLSRSS--------SSRLLSATLTAKLHR-C-----YMASLQLTKQSSSATRRPQTDT 168
             S   +S        S + LS  L AKL + C     Y+  L+L   SS      +   
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 169 IRTDFSVTSGIAPVGVETDV-----TSTKKVKLESVDRGEPLDDDHIQQMIDELLDY 207
            +T  +    +  +G + +        T K+K+ + D  E  DD    QMI+ELL++
Sbjct: 125 SKTSPNWVK-LVELGDKVNARPGGDIETNKMKVRNEDVQE--DDQMAMQMIEELLNW 178

[Close]

BLAST of Carg09356 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-21
Identity = 74/186 (39.78%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 49  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 108
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 109 DASLSRSS----------SSRLLSATLTAKLHRC------YMASLQLTKQSS-------- 168
             S   S           S + LS  L AKL +        +  L+L   SS        
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGVWQKR 124

Query: 169 SATRRPQTDTIRTDFSVTSGIAPVGVETDVTSTKKVKLESVDRGEPL---DDDHI-QQMI 207
           + ++   T  +R +    + +    V+  +T+  K  +E  +  E     D+D +  +MI
Sbjct: 125 AGSKTSPTWVMRLELG--NVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAMEMI 184

[Close]

BLAST of Carg09356 vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 5.7e-20
Identity = 74/177 (41.81%), Postives = 98/177 (55.37%), Query Frame = 0


Query: 49  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 108
           ++FRGVRQR WGSWVSEIRHPLL   +WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 109 DASLSRSS--------SSRLLSATLTAKLHR-C-----YMASLQLTKQSSSATRRPQTDT 168
             S   +S        S + LS  L AKL + C     Y+  L+L   SS      +   
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 169 IRTDFSVTSGIAPVGVETDV-----TSTKKVKLESVDRGEPLDDDHIQQMIDELLDY 207
            +T  +    +  +G + +        T K+K+ + D  E  DD    QMI+ELL++
Sbjct: 125 SKTSPNWVK-LVELGDKVNARPGGDIETNKMKVRNEDVQE--DDQMAMQMIEELLNW 175

The following BLAST results are available for this feature:

BLAST of Carg09356 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029486.1	1.2e-120	100.00	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
KAG6598552.1	4.7e-93	100.00	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022962278.1	1.8e-92	99.44	ethylene-responsive transcription factor ERF003-like [Cucurbita moschata]	[more]
XP_023546749.1	1.2e-91	98.88	ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo...	[more]
XP_022996634.1	2.0e-91	98.32	ethylene-responsive transcription factor ERF003-like [Cucurbita maxima]	[more]

BLAST of Carg09356 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AW5	4.1e-55	64.29	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	3.6e-43	60.48	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]
Q9XI33	4.4e-25	59.41	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q3E958	1.7e-21	42.94	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LFN7	1.5e-20	39.78	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Carg09356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HED1	8.7e-93	99.44	ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1K9A3	9.6e-92	98.32	ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661...	[more]
A0A1S3BD40	3.5e-78	82.65	ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7VHF4	3.0e-77	89.71	Ethylene-responsive transcription factor ERF003-like protein OS=Cucumis melo var...	[more]
A0A0A0LSL8	5.7e-76	88.00	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G382540 PE=...	[more]

BLAST of Carg09356 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25190.1	2.9e-56	64.29	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	3.1e-26	59.41	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	1.2e-22	42.94	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	1.0e-21	39.78	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.1	5.7e-20	41.81	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 73..89 score: 70.91 coord: 51..62 score: 61.21
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 50..113 e-value: 2.0E-39 score: 147.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 50..99 e-value: 2.8E-11 score: 43.5
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 50..107 score: 20.718536
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 49..109 e-value: 1.66927E-35 score: 118.143
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 49..109 e-value: 6.9E-26 score: 92.2
None	No IPR available	PANTHER	PTHR31194:SF112	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003	coord: 44..215
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 44..215
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 50..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09356-RA	Carg09356-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity