Carg09355 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTGCTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGGTAACTGGTTCTTCCTTGTACTGATTTTCGTTTTGTTTTCTCGCTTTGGATTTATTGTGCATTACACTTTCGGTTGATTTTCTTAAACGTGCGCAGCCGTCGCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTCTCTACTCTTCCGTTTTCTTTTACTCAATGTTCTCGTTTCATTATTTCTCATTTCAAAATCTAACGCTGCATTTTGATGTATATTTCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTCTGAGGTGTTTTGCATGTGATTTTCTCTTCATCCTTGGAAATTGTTTTGATCCTAATTAAGCGTTAGTAGTGGAGAAGACAGAGAATATAGAGCTAGATGTTTGAATTTTTGCCTCTCAATTAAGAATTTATCGAAGAGAATCTGGAGTAGTCTTTAGGGCTACTTCCCTATGTTAAATTTATATCTGGAGTGATGTCAATTCGGAAGTTAATTCGTGTTGGTTTAGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGTAGAGTTTTATTATGGCCTTTGATCATTGAAGTATTCAGGTGGATGAGATGAGTTTAGTATCTCTACTAGATCATCGATTGACTGGGTGCATTAGCTTGCGTATCTGAACAAATTAACTCCTACAAGTGTGTTGTATGGATTTAGTTGTTAAATCTCTTCCTCTATGTTGGAACTTTGATTTTGATTCATGAACATTCATTCACTTTCTGTTTGTGTCCGGAACTCTTCACTACATTTCATGCTTAGTTTCTATCAGATCAGTGATCATAAACATAACTGTCCATTTTCAAATTTTCAAGTTTCATTTCTTAAGAACAAAATTGACTTTCAAGCTATTAGTAATTTGACGTGTCGCCATATGTCTCTTCATGTGATGAACAACATAGAAATAAGGTTGTAATGGCCTTTGGAGTTCCCAAGTGAGAACTAAATTTACAGGCTTTAGCAAATTCCAAGTCTTAGTCACTTTTCATGTAACATCTCAAATCCAAATATTGTTTCTTTAGG AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTGCTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGCCGTCGCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTCTGAGGTGTTTTGCATGTGATTTTCTCTTCATCCTTGGAAATTGTTTTGATCCTAATTAAGCGTTAGTAGTGGAGAAGACAGAGAATATAGAGCTAGATGTTTGAATTTTTGCCTCTCAATTAAGAATTTATCGAAGAGAATCTGGAGTAGTCTTTAGGGCTACTTCCCTATGTTAAATTTATATCTGGAGTGATGTCAATTCGGAAGTTAATTCGTGTTGGTTTAGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGTAGAGTTTTATTATGGCCTTTGATCATTGAAGTATTCAGGTGGATGAGATGAGTTTAGTATCTCTACTAGATCATCGATTGACTGGGTGCATTAGCTTGCGTATCTGAACAAATTAACTCCTACAAGTGTGTTGTATGGATTTAGTTGTTAAATCTCTTCCTCTATGTTGGAACTTTGATTTTGATTCATGAACATTCATTCACTTTCTGTTTGTGTCCGGAACTCTTCACTACATTTCATGCTTAGTTTCTATCAGATCAGTGATCATAAACATAACTGTCCATTTTCAAATTTTCAAGTTTCATTTCTTAAGAACAAAATTGACTTTCAAGCTATTAGTAATTTGACGTGTCGCCATATGTCTCTTCATGTGATGAACAACATAGAAATAAGGTTGTAATGGCCTTTGGAGTTCCCAAGTGAGAACTAAATTTACAGGCTTTAGCAAATTCCAAGTCTTAGTCACTTTTCATGTAACATCTCAAATCCAAATATTGTTTCTTTAGG AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTGCTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGCCGTCGCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTCTGA RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF Homology
BLAST of Carg09355 vs. NCBI nr
Match: KAG7029487.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 238.4 bits (607), Expect = 3.1e-59 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of Carg09355 vs. NCBI nr
Match: XP_022962571.1 (uncharacterized protein LOC111462968 [Cucurbita moschata]) HSP 1 Score: 235.0 bits (598), Expect = 3.5e-58 Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of Carg09355 vs. NCBI nr
Match: KAG7024434.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22 Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0
BLAST of Carg09355 vs. NCBI nr
Match: KAG6585491.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020407.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 115.2 bits (287), Expect = 4.0e-22 Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0
BLAST of Carg09355 vs. NCBI nr
Match: RCV30551.1 (hypothetical protein SETIT_6G104600v2 [Setaria italica]) HSP 1 Score: 111.3 bits (277), Expect = 5.8e-21 Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2) HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22 Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2) HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22 Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22 Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21 Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2) HSP 1 Score: 103.2 bits (256), Expect = 2.1e-21 Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy TrEMBL
Match: A0A6J1HDM7 (uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC111462968 PE=3 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 1.7e-58 Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy TrEMBL
Match: A0A0A0LM35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 3.2e-25 Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy TrEMBL
Match: A0A368RK84 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_6G104600v2 PE=3 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21 Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy TrEMBL
Match: K3YM29 (Uncharacterized protein OS=Setaria italica OX=4555 PE=3 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21 Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg09355 vs. ExPASy TrEMBL
Match: A0A2P5ANB0 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315710 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 3.6e-21 Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0
BLAST of Carg09355 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein ) HSP 1 Score: 103.2 bits (256), Expect = 1.5e-22 Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0
BLAST of Carg09355 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein ) HSP 1 Score: 98.2 bits (243), Expect = 4.7e-21 Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0
BLAST of Carg09355 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein ) HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18 Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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