Carg09355 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09355
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L39
LocationCarg_Chr05: 1688509 .. 1689819 (+)
RNA-Seq ExpressionCarg09355
SyntenyCarg09355
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTGCTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGGTAACTGGTTCTTCCTTGTACTGATTTTCGTTTTGTTTTCTCGCTTTGGATTTATTGTGCATTACACTTTCGGTTGATTTTCTTAAACGTGCGCAGCCGTCGCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTCTCTACTCTTCCGTTTTCTTTTACTCAATGTTCTCGTTTCATTATTTCTCATTTCAAAATCTAACGCTGCATTTTGATGTATATTTCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTCTGAGGTGTTTTGCATGTGATTTTCTCTTCATCCTTGGAAATTGTTTTGATCCTAATTAAGCGTTAGTAGTGGAGAAGACAGAGAATATAGAGCTAGATGTTTGAATTTTTGCCTCTCAATTAAGAATTTATCGAAGAGAATCTGGAGTAGTCTTTAGGGCTACTTCCCTATGTTAAATTTATATCTGGAGTGATGTCAATTCGGAAGTTAATTCGTGTTGGTTTAGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGTAGAGTTTTATTATGGCCTTTGATCATTGAAGTATTCAGGTGGATGAGATGAGTTTAGTATCTCTACTAGATCATCGATTGACTGGGTGCATTAGCTTGCGTATCTGAACAAATTAACTCCTACAAGTGTGTTGTATGGATTTAGTTGTTAAATCTCTTCCTCTATGTTGGAACTTTGATTTTGATTCATGAACATTCATTCACTTTCTGTTTGTGTCCGGAACTCTTCACTACATTTCATGCTTAGTTTCTATCAGATCAGTGATCATAAACATAACTGTCCATTTTCAAATTTTCAAGTTTCATTTCTTAAGAACAAAATTGACTTTCAAGCTATTAGTAATTTGACGTGTCGCCATATGTCTCTTCATGTGATGAACAACATAGAAATAAGGTTGTAATGGCCTTTGGAGTTCCCAAGTGAGAACTAAATTTACAGGCTTTAGCAAATTCCAAGTCTTAGTCACTTTTCATGTAACATCTCAAATCCAAATATTGTTTCTTTAGG

mRNA sequence

AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTGCTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGCCGTCGCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTCTGAGGTGTTTTGCATGTGATTTTCTCTTCATCCTTGGAAATTGTTTTGATCCTAATTAAGCGTTAGTAGTGGAGAAGACAGAGAATATAGAGCTAGATGTTTGAATTTTTGCCTCTCAATTAAGAATTTATCGAAGAGAATCTGGAGTAGTCTTTAGGGCTACTTCCCTATGTTAAATTTATATCTGGAGTGATGTCAATTCGGAAGTTAATTCGTGTTGGTTTAGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGTAGAGTTTTATTATGGCCTTTGATCATTGAAGTATTCAGGTGGATGAGATGAGTTTAGTATCTCTACTAGATCATCGATTGACTGGGTGCATTAGCTTGCGTATCTGAACAAATTAACTCCTACAAGTGTGTTGTATGGATTTAGTTGTTAAATCTCTTCCTCTATGTTGGAACTTTGATTTTGATTCATGAACATTCATTCACTTTCTGTTTGTGTCCGGAACTCTTCACTACATTTCATGCTTAGTTTCTATCAGATCAGTGATCATAAACATAACTGTCCATTTTCAAATTTTCAAGTTTCATTTCTTAAGAACAAAATTGACTTTCAAGCTATTAGTAATTTGACGTGTCGCCATATGTCTCTTCATGTGATGAACAACATAGAAATAAGGTTGTAATGGCCTTTGGAGTTCCCAAGTGAGAACTAAATTTACAGGCTTTAGCAAATTCCAAGTCTTAGTCACTTTTCATGTAACATCTCAAATCCAAATATTGTTTCTTTAGG

Coding sequence (CDS)

AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTGCTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGCCGTCGCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTCTGA

Protein sequence

RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Homology
BLAST of Carg09355 vs. NCBI nr
Match: KAG7029487.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.4 bits (607), Expect = 3.1e-59
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVAL 60
           RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVAL
Sbjct: 1   RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVAL 60

Query: 61  AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 61  AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 119

BLAST of Carg09355 vs. NCBI nr
Match: XP_022962571.1 (uncharacterized protein LOC111462968 [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 3.5e-58
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0

Query: 1   RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVAL 60
           RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHI+CSSPLSLV SEIRVSVSCFLFVAL
Sbjct: 12  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVAL 71

Query: 61  AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 72  AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 130

BLAST of Carg09355 vs. NCBI nr
Match: KAG7024434.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 60  LAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 119
           LAA  R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 28  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 87

BLAST of Carg09355 vs. NCBI nr
Match: KAG6585491.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020407.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-22
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 64  SRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           SR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 28  SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 83

BLAST of Carg09355 vs. NCBI nr
Match: RCV30551.1 (hypothetical protein SETIT_6G104600v2 [Setaria italica])

HSP 1 Score: 111.3 bits (277), Expect = 5.8e-21
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 65  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 44  RFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 98

BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of Carg09355 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of Carg09355 vs. ExPASy TrEMBL
Match: A0A6J1HDM7 (uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC111462968 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.7e-58
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0

Query: 1   RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVAL 60
           RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHI+CSSPLSLV SEIRVSVSCFLFVAL
Sbjct: 12  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVAL 71

Query: 61  AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 72  AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 130

BLAST of Carg09355 vs. ExPASy TrEMBL
Match: A0A0A0LM35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.2e-25
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0

Query: 54  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 113
           C LFVAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW
Sbjct: 12  CSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHW 71

Query: 114 RRTKLGF 120
           RRTKLGF
Sbjct: 72  RRTKLGF 78

BLAST of Carg09355 vs. ExPASy TrEMBL
Match: A0A368RK84 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_6G104600v2 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 65  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 44  RFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 98

BLAST of Carg09355 vs. ExPASy TrEMBL
Match: K3YM29 (Uncharacterized protein OS=Setaria italica OX=4555 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 65  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 16  RFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 70

BLAST of Carg09355 vs. ExPASy TrEMBL
Match: A0A2P5ANB0 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315710 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.6e-21
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 65  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17  RPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71

BLAST of Carg09355 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

BLAST of Carg09355 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 98.2 bits (243), Expect = 4.7e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

BLAST of Carg09355 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 77  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 120
           IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7029487.13.1e-59100.0060S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022962571.13.5e-5898.32uncharacterized protein LOC111462968 [Cucurbita moschata][more]
KAG7024434.11.8e-2295.0060S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6585491.14.0e-2298.2160S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia] >KAG7... [more]
RCV30551.15.8e-2194.55hypothetical protein SETIT_6G104600v2 [Setaria italica][more]
Match NameE-valueIdentityDescription
Q6KAJ84.1e-2296.0860S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P... [more]
P514264.1e-2296.0860S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P... [more]
P514254.1e-2296.0860S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1[more]
Q5SMI41.2e-2194.1260S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P... [more]
P514242.1e-2194.1260S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1HDM71.7e-5898.32uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC1114629... [more]
A0A0A0LM353.2e-2594.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1[more]
A0A368RK842.8e-2194.55Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_6G104600v2 PE=3 SV=1[more]
K3YM292.8e-2194.55Uncharacterized protein OS=Setaria italica OX=4555 PE=3 SV=1[more]
A0A2P5ANB03.6e-2196.36Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315710 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT4G31985.11.5e-2294.12Ribosomal protein L39 family protein [more]
AT3G02190.14.7e-2190.20Ribosomal protein L39 family protein [more]
AT2G25210.11.3e-1897.67Ribosomal protein L39 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 69..119
e-value: 5.1E-29
score: 102.0
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 71..118
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 77..117
e-value: 1.7E-21
score: 75.5
IPR000077Ribosomal protein L39eHAMAPMF_00629Ribosomal_L39ecoord: 69..119
score: 12.866076
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 41..119
NoneNo IPR availablePANTHERPTHR19970:SF2460S RIBOSOMAL PROTEIN L39-2coord: 41..119
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 98..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09355-RACarg09355-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome