Carg09185 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09185
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 1178935 .. 1179397 (+)
RNA-Seq ExpressionCarg09185
SyntenyCarg09185
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGTTGATAGATAGCTCAGTCCAATGCCGACCCAACTTGGAAGGATTCAACTCAATGGTGCCCACTTTTGGTATTAGAGTCTTGAAGGTAAGTATCTAATGATGCTCCATTGGACCATATAATATGCAGTGGAAACCACTGTTGGCCAAATGAAAAAGGAGAAGAAAAAACCATTATCTTGGGAAGGCAAATGCCAAATCTGTCTGTTTAGGTAACACTTTCTTTTCAACTATTACGTCCCACTCCAATCCCATGCCACCATGTTTTGATTAAGTCTAAACAACTCTCAGGTAGCACGAGATTTGCAGGAGTTGACAGAGTCATCAAGCAGGCAGGGGGGCGGGTGATGGAAAGTAAGGACCACCATCAGCCACCACCATGTGCCAACCCCGAATCGAAGGCACGTCATTGCTCGGCCAACGCCACAATCAATTGCCATCTGAATTATGAATGTTGA

mRNA sequence

ATGGTTGAGTTGATAGATAGCTCAGTCCAATGCCGACCCAACTTGGAAGGATTCAACTCAATGGTGCCCACTTTTGGTATTAGAGTCTTGAAGGTAACACTTTCTTTTCAACTATTACGTCCCACTCCAATCCCATGCCACCATGTTTTGATTAAGTCTAAACAACTCTCAGGTAGCACGAGATTTGCAGGAGTTGACAGAGTCATCAAGCAGGCAGGGGGGCGGGTGATGGAAAGTAAGGACCACCATCAGCCACCACCATGTGCCAACCCCGAATCGAAGGCACGTCATTGCTCGGCCAACGCCACAATCAATTGCCATCTGAATTATGAATGTTGA

Coding sequence (CDS)

ATGGTTGAGTTGATAGATAGCTCAGTCCAATGCCGACCCAACTTGGAAGGATTCAACTCAATGGTGCCCACTTTTGGTATTAGAGTCTTGAAGGTAACACTTTCTTTTCAACTATTACGTCCCACTCCAATCCCATGCCACCATGTTTTGATTAAGTCTAAACAACTCTCAGGTAGCACGAGATTTGCAGGAGTTGACAGAGTCATCAAGCAGGCAGGGGGGCGGGTGATGGAAAGTAAGGACCACCATCAGCCACCACCATGTGCCAACCCCGAATCGAAGGCACGTCATTGCTCGGCCAACGCCACAATCAATTGCCATCTGAATTATGAATGTTGA

Protein sequence

MVELIDSSVQCRPNLEGFNSMVPTFGIRVLKVTLSFQLLRPTPIPCHHVLIKSKQLSGSTRFAGVDRVIKQAGGRVMESKDHHQPPPCANPESKARHCSANATINCHLNYEC
Homology
[Close]
BLAST of Carg09185 vs. NCBI nr
Match: KAG7021567.1 (hypothetical protein SDJN02_15293, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVELIDSSVQCRPNLEGFNSMVPTFGIRVLKVTLSFQLLRPTPIPCHHVLIKSKQLSGST 60
           MVELIDSSVQCRPNLEGFNSMVPTFGIRVLKVTLSFQLLRPTPIPCHHVLIKSKQLSGST
Sbjct: 1   MVELIDSSVQCRPNLEGFNSMVPTFGIRVLKVTLSFQLLRPTPIPCHHVLIKSKQLSGST 60

Query: 61  RFAGVDRVIKQAGGRVMESKDHHQPPPCANPESKARHCSANATINCHLNYEC 113
           RFAGVDRVIKQAGGRVMESKDHHQPPPCANPESKARHCSANATINCHLNYEC
Sbjct: 61  RFAGVDRVIKQAGGRVMESKDHHQPPPCANPESKARHCSANATINCHLNYEC 112

[Close]
BLAST of Carg09185 vs. NCBI nr
Match: KAG6587606.1 (hypothetical protein SDJN03_16171, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-24
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 47  HHVLIKSKQLS---GSTRFAGVDRVIKQAGGRVMESKDHHQPPPCANPESKARHCSANAT 106
           +H L K+   S   GSTRFAGVDRVIKQAGGRVMESKDHHQPPPCANPESKARHCSANAT
Sbjct: 300 NHYLGKANAKSVCLGSTRFAGVDRVIKQAGGRVMESKDHHQPPPCANPESKARHCSANAT 359

Query: 107 INCHLNYEC 113
           INCHLNYEC
Sbjct: 360 INCHLNYEC 368

The following BLAST results are available for this feature:
BLAST of Carg09185 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021567.11.5e-58100.00hypothetical protein SDJN02_15293, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6587606.12.3e-2485.51hypothetical protein SDJN03_16171, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg09185 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09185 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09185 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09185-RACarg09185-RAmRNA