Carg09118 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09118
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 1495972 .. 1497308 (-)
RNA-Seq ExpressionCarg09118
SyntenyCarg09118
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAGAGATGCTTGAATGCACCTCTTATGAACTGGAGGAGGTGTATCCAAAGCTCGTGACAGACCCATCCGTGTTCAAGCAGTCCAATCATTCTCTTCCTTTTACAAATAACTCCTTCCAAGGACAGGTCCTTAAAGGTACGCAAATATAGTTGACCATTTTCTTTAATGTTTTAAACCTTGAGTCCTCATCATATTAGTATGGTAGGGTGTGAATCTATCCCACTTTGGACTTGACCCTTTATAGTTTGACATTGGATTCTAGGAGTGTTTTTGAAAATATCAAAATCTCTTTTGTTAGGAGAGATTTAGCTTGTAGTAGGTCCTGTTTCTGTGATGTCCCACGTTGGTTGGAGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCTCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGTCCGAAAGGGAAAGTCCAAAGAAGACAATATCTGCTAGCGATGGATCTGGGGCATTACAGTTTCTTTCTTTTATCTTCATTAGATTCTTCCTTCTCAATGGGTAAGGGTAAGTGTGATGAAGTCAATTCTGACCACCATTTTCACCTGAATTCGGAAGAACTATTCTACTTCAACACATTCCCGCAAGTACCATTGTGAAAACTCAGTCATACACGAGGAAGGAACACTGGTACTTATCCCTCAGTTTCATCACTTTATTTTACAAGCTCTCCTGCTAAACAAATGAAGTACAACAACATATCAAGTGACGTTGGGAGCCAAGAGATTTTCATTTTTGGCTAGGTCTCAACTAATACATAGTTCTTCTAGGCACCTTCGGAATTTGAAAGAAACAGTAGGCAAAGAGGTTGCTTACCCTGTTATTGTCAAGCAGGCTCCATGATTCTGTGAGATTCCCATTTGTTTTTTTTTTTTTTTTTTTTTCCTTCCCATTATTATTATTACAATTCAGGCATAGCACCAAAGTGTCCCAGCCTGGGGACGTGCCTTAACTTGAGAAATAACCACAATGGTGACAAATTTCAAAAGTAGTATTTTTAGATTAAGATTTCCTCTATTATTCTAGATTTGATCTGTTTGGTTATTAGTAGTTGCTCCTTTGGCTGTTTAGAAACATGGGTAAAGGTTTATCTCCTGTACTGGTATGAATTGAAACCTCATCATTCTCTCCCTTTCTGAGTGAAACATTTCAACTTGAAAACCTCTACCTCGTTCTCTAAAAGTCCTTTTATTTCCCCTCTCCTAAAGATGTAGAATTTGGAATTAGAGAGGTGCTCTCTTAATTGGTTTCTCTTTGAATACAGAGAATGATGAAGTTATAGTGGGTCCATCTAAATCGTAA

mRNA sequence

ATGGAAAAAGAGATGCTTGAATGCACCTCTTATGAACTGGAGGAGGTGTATCCAAAGCTCGTGACAGACCCATCCGTGTTCAAGCAGTCCAATCATTCTCTTCCTTTTACAAATAACTCCTTCCAAGGACAGGTCCTTAAAGAGAATGATGAAGTTATAGTGGGTCCATCTAAATCGTAA

Coding sequence (CDS)

ATGGAAAAAGAGATGCTTGAATGCACCTCTTATGAACTGGAGGAGGTGTATCCAAAGCTCGTGACAGACCCATCCGTGTTCAAGCAGTCCAATCATTCTCTTCCTTTTACAAATAACTCCTTCCAAGGACAGGTCCTTAAAGAGAATGATGAAGTTATAGTGGGTCCATCTAAATCGTAA

Protein sequence

MEKEMLECTSYELEEVYPKLVTDPSVFKQSNHSLPFTNNSFQGQVLKENDEVIVGPSKS
Homology
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BLAST of Carg09118 vs. NCBI nr
Match: KAG7021634.1 (hypothetical protein SDJN02_15360, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 3.6e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEKEMLECTSYELEEVYPKLVTDPSVFKQSNHSLPFTNNSFQGQVLKENDEVIVGPSKS 60
          MEKEMLECTSYELEEVYPKLVTDPSVFKQSNHSLPFTNNSFQGQVLKENDEVIVGPSKS
Sbjct: 1  MEKEMLECTSYELEEVYPKLVTDPSVFKQSNHSLPFTNNSFQGQVLKENDEVIVGPSKS 59

The following BLAST results are available for this feature:
BLAST of Carg09118 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021634.13.6e-24100.00hypothetical protein SDJN02_15360, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg09118 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09118 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09118 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09118-RACarg09118-RAmRNA