Carg09042 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09042
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionU3 small nucleolar RNA-associated protein 25 isoform X1
LocationCarg_Chr11: 1896188 .. 1900092 (+)
RNA-Seq ExpressionCarg09042
SyntenyCarg09042
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGCAGTTAGTTCGTAAACGAGGTGACGATTCTTGATTTTTCCTTCTCTTTCTTTCGTTCTTTTGTTGGGAATATGGCTTGATTGCTTAGCTAGTTCATGAAGAAATACAGTTCTGAGATGATTATTTTATATATTGCTTGTTATTGACAATGATGTATTTGTGTCTATATTTCCTTTAGTGCGCACTTCCTTTTCATATGCGAGGGCAATTATGGTGAATTTTTGTGTAGGAGCCAGTGAGGCCGAGGAACTTGAAGTTTTCAAAGAGCAATCAAACTATGATAATTTGTTAATGCAATTACAATCATGTAATAAGGATGTTGCTGCTTCATGTATGAAAAGGTAGTATTCATTAACTGGATTTTGATACTGAATTGTTATTATTAGAAAACTAAATGCTATTTGATATGGTTTATTCTAATTTTAAAGAATATTTACTATCTCTAGATTGTCGAATTGTGTTTGATACCTTGGTTCATTAATTTGCCGCAAATATGAATTAAAAAGGGTTTTACTATTTGTTGGGGTTACATTTCACGCATAAGCGTGATTTATTATTGTACTGTCCATGTTTCTATCACGATGCTTGCCATTTAGAGAAAGCCTCATGTGAGAGTTGGGCCAGTTACTAATCTTGCACGAAAAACTAGAAGCTAGGCCGTAAAATGAGGAATATCAAATTTGATTCTGACGATCTTGGATTAGTGGTAGTTAATGTTGTGACCTGATGCTTATTAATTTGAGTCGTTAATCGTGTACTGGCAGATATATTATGCATATAAATTTTCATGAGAGAGACATGTTTGCTCTATACACAAGTTGTTGGACAACACAATATTTCTTTTTATACTACTTAGCTCGTGGAATTATTAAACTTCACTTAGAACAAATTACCATTGTAACTTAAAAATTATCTTTTATTATTTCTTTTTGCAAGTTGCTAAGGCAGTTATATTTGCCTTAAATTTGAACTTTCTCTTTTTTGCCTTGTCTTGTCCATGTTTTTCCCTAGACAAAGACAAGAAGAAGGCAGAAGTGACACAGAGGATGATGAGGATAGCTGTCCTGAATCTTCTAGTGCATTAGAGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAGGAAGGTAAGAGTTTTATGGGGTTCTCATGGCATTGTTAATTTATGTTTCAGTATCTTTTTGACCGTTGATTTTTAATATTTTGGCTAGTTGTAGAACTTCTAGTCATCAAAGTGGTCCTTTGTTTCTCAAGACACTAACAACGTGTTTCAATATTGTTTTAAAACTTTTCTTCTTCTTACCGTCAACAGATGTATGTGTTCTCATGGCTAAGACTATTAGACTATCTTTACCAGTAATGCTGTTTTATGGTATATGTTCTCATGGCTAAGACTATTAGACTATCTTTTACCAGTAATGCTGTTTTATGGCATTGATGGTTTTAACTTAATTATTTATTGAACATTTTGGTAAATGTTAATATCAGGAAATGACCTTTTTCTCTGTTTCTTGTTTCCCAAATAAAGAAGTCTGACAATGGGGAAAATCGAGGCTGGTCTTGACCTTGACCTTTTCATTGACCTGGCTTTCTGTTTTGTTCTTTGCTTGGAGCCTCGTTAGTATGTTAAACTATGAAGAATAGTGCCCATTATCCTAAATGGCAGAATGTGGAAACTCTTTTCATGTTTCCACCATTTCTTTTTCGGGCCTTTTTGTAAAGTAGAGGTTTTGTCCTGTTGATGGGGATAGACCTTAAAATTGATTGTGAAGACCAACAATTTTGTTATGAGAAGTTTGAGCATTATGCTTCTAATCTTTTGCTAAGAATGTCATCTAAAATTTCATTGAAGGAGTTGAATCCCCAGTCAGGCTTAAGAATATTCACAATTTTAAATATAACCCGAGTAAAATCCAGGAGTTTCTTCTAGGTTTCTTTTGGTGGCTCCCGTGTGTGCTTGAACCTATGCTTTGGTACAGCCAAGTTTTGTAATTTTTCATTCTTTTTAGAAGACAGTACCTTACAAAAATTACAGAAATTTAATGACGAAGAAAGTTTCTTTTATTAGTTTTCACTAGTCCTTTTTGTTTAAGACTTGAACATCGTTTTTATCATCTTTTCTATATGAAACTTATATGACCTAACGTTATTTTTATATTATTGTTTGGATTCATCCCGTTGCATAATTTTGCTTTTATTTCTTTATACAAATTCTCCATATTGTAGGGACTGATGATGAGTCACCTAAAAGTTCATCTTTGGGGAACAATATGTCTGAGTCAATGCCAAACAGCGAAACTGAAGAAGACACTGAATCTGATAGGTCTGACACAGATCAGGAAAATGAGCTTGAAGTTGGTTTGCATGGTGACCCTTCTACATCAGATATAACTAGGTTAGTCCATAATTTTATGGTGAATCATATAAATCATGTCCTTTGTTTTTGAGATCTAATCTCATATTATAGATTTCTCTTCAAATATTCAACCATACCCTTTCTTAAGTTGGAACCATGAAGTCAATGACATAAAAATTATAGTTGCTTGTTTAGATATTAATCTATATAGTACTGATTTCTTCAATTCTAAATTTAGGGCGTTCGTTGATTGGGTTGGGTGGATTTCTAGACAATTCCAAATGTTTGAATTGGAAATTTTCCTAAGCTCAAAGACTCTCGTTAGATTATGGGTTCTATCTAGGTTGAGTTGGTTTAGTCATTTATTTTTGAAAAAGATAGTAAACCACCCATACTTAATGTATAAATTATAATTCGCGAACTATCTATTTTCGGAGTTCTTTCAAATGTTCGTAAAATTTTGTGAAAAGGGAAGTCAGAAGTGGCAACCAGTGAAACGAAAAACGATCTCAAATACTTCACGACTTATAGAGTGAAATAATTTTTTTAGTTAGTGATTTCAAGTTGTTTTGGTTCTACTCAAATCAATTTTATTGGACTTATTCTCCCAAACTCACTCATTGGTGTTGGGTTGGATTGTTCAGTTTTAGCGACTTGATGAGTTCAATTTTCTTTAGGTGTTTTCGATGGAAGAGGTTTGTAACTAAAAGGATGTTGGTTGGAAGTGTGTGGTTGTGGCCTTTTAATCTCTTATTATTATTATTATCATTGTAATTGTTTCTTTTAAAAATAAAATTAAGGAATGAAGCTTTTACTTGGCCATAGAGATCATAGTCATATGATTTATTGCTTATACTTCTATTTATGCAGTTCTTTTAACAAACACATGGAGCACAAGTTATCAAAAGAAGAGGTTGAGAATTTCCCTAAAATGAAATGGAAATATACATGGGCGGTTCCTGCAGTAGGGATGTCTAACTGCAAGTGGTCAGGGACCGGAGAGTGCCTTCTAAAGGTATTTTAATTTTTACATCTGTAGAGTTTTTGAAATCTGATTTATTTTTGTGAGTTCATCTTCCATCCTTATCAAAAATTTTAATTCTCAAGTTCTTCTTTTGATTGTTGATGCTAAATATTTTTAATGATTATATTTCAGGATTTAGAAACCAAATCTAGTAATTACAATCTTAAGCAAAGGTTATATGAGCATTGGTTGGATGTGTACAAGACATCTGGAGGCACTGACTTTCATTCGTCGAGACAAAGATTTTTCTTTTCCCTTTGTGAGTTTTCTTTTTCTTTTTTTTTGGGTATATGTGTATATTGTATACAATTGCTTTTGAATATATTGCCGCACTTGCCGCACACCTTTACAAGCTTTCATATTCTCCCCTATCAGAAGATTCCTTTTACGGGATAAGAATTGAATATTTCATTCGCATATTCTTGTTCAATTTTTTTTTCATGAACATATTTGTAAATATGATTTAGATGAGGACTCAAAGTTGGATGAAACAGAAAACATAGGTAAGATGCAGGAGTAA

mRNA sequence

ATGGTGAAGCAGTTAGTTCGTAAACGAGGAGCCAGTGAGGCCGAGGAACTTGAAGTTTTCAAAGAGCAATCAAACTATGATAATTTGTTAATGCAATTACAATCATGTAATAAGGATGTTGCTGCTTCATGTATGAAAAGACAAAGACAAGAAGAAGGCAGAAGTGACACAGAGGATGATGAGGATAGCTGTCCTGAATCTTCTAGTGCATTAGAGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAGGAAGGGACTGATGATGAGTCACCTAAAAGTTCATCTTTGGGGAACAATATGTCTGAGTCAATGCCAAACAGCGAAACTGAAGAAGACACTGAATCTGATAGGTCTGACACAGATCAGGAAAATGAGCTTGAAGTTGGTTTGCATGGTGACCCTTCTACATCAGATATAACTAGTTCTTTTAACAAACACATGGAGCACAAGTTATCAAAAGAAGAGGTTGAGAATTTCCCTAAAATGAAATGGAAATATACATGGGCGGTTCCTGCAGTAGGGATGTCTAACTGCAAGTGGTCAGGGACCGGAGAGTGCCTTCTAAAGGATTTAGAAACCAAATCTAGTAATTACAATCTTAAGCAAAGGTTATATGAGCATTGGTTGGATGTGTACAAGACATCTGGAGGCACTGACTTTCATTCGTCGAGACAAAGATTTTTCTTTTCCCTTTATGAGGACTCAAAGTTGGATGAAACAGAAAACATAGGTAAGATGCAGGAGTAA

Coding sequence (CDS)

ATGGTGAAGCAGTTAGTTCGTAAACGAGGAGCCAGTGAGGCCGAGGAACTTGAAGTTTTCAAAGAGCAATCAAACTATGATAATTTGTTAATGCAATTACAATCATGTAATAAGGATGTTGCTGCTTCATGTATGAAAAGACAAAGACAAGAAGAAGGCAGAAGTGACACAGAGGATGATGAGGATAGCTGTCCTGAATCTTCTAGTGCATTAGAGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAGGAAGGGACTGATGATGAGTCACCTAAAAGTTCATCTTTGGGGAACAATATGTCTGAGTCAATGCCAAACAGCGAAACTGAAGAAGACACTGAATCTGATAGGTCTGACACAGATCAGGAAAATGAGCTTGAAGTTGGTTTGCATGGTGACCCTTCTACATCAGATATAACTAGTTCTTTTAACAAACACATGGAGCACAAGTTATCAAAAGAAGAGGTTGAGAATTTCCCTAAAATGAAATGGAAATATACATGGGCGGTTCCTGCAGTAGGGATGTCTAACTGCAAGTGGTCAGGGACCGGAGAGTGCCTTCTAAAGGATTTAGAAACCAAATCTAGTAATTACAATCTTAAGCAAAGGTTATATGAGCATTGGTTGGATGTGTACAAGACATCTGGAGGCACTGACTTTCATTCGTCGAGACAAAGATTTTTCTTTTCCCTTTATGAGGACTCAAAGTTGGATGAAACAGAAAACATAGGTAAGATGCAGGAGTAA

Protein sequence

MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSLYEDSKLDETENIGKMQE
Homology
[Close]
BLAST of Carg09042 vs. NCBI nr
Match: KAG7021708.1 (hypothetical protein SDJN02_15435, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 471.1 bits (1211), Expect = 6.0e-129
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD
Sbjct: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT
Sbjct: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW
Sbjct: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSLYEDSKLDET 240
           SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSLYEDSKLDET
Sbjct: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSLYEDSKLDET 240

Query: 241 ENIGKMQE 249
           ENIGKMQE
Sbjct: 241 ENIGKMQE 248

[Close]
BLAST of Carg09042 vs. NCBI nr
Match: XP_022930084.1 (U3 small nucleolar RNA-associated protein 25 isoform X1 [Cucurbita moschata])

HSP 1 Score: 436.0 bits (1120), Expect = 2.1e-118
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD
Sbjct: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSE MPNSETEEDTESDRSDT
Sbjct: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSEPMPNSETEEDTESDRSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW
Sbjct: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Sbjct: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 231

[Close]
BLAST of Carg09042 vs. NCBI nr
Match: KAG6587740.1 (hypothetical protein SDJN03_16305, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 436.0 bits (1120), Expect = 2.1e-118
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD
Sbjct: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSE MPNSETEEDTESDRSDT
Sbjct: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSEPMPNSETEEDTESDRSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW
Sbjct: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Sbjct: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 231

[Close]
BLAST of Carg09042 vs. NCBI nr
Match: XP_022930086.1 (U3 small nucleolar RNA-associated protein 25 isoform X2 [Cucurbita moschata])

HSP 1 Score: 427.9 bits (1099), Expect = 5.8e-116
Identity = 227/231 (98.27%), Postives = 227/231 (98.27%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD
Sbjct: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           EDSCPESSSAL   EEEEEEEEEEGTDDESPKSSSLGNNMSE MPNSETEEDTESDRSDT
Sbjct: 61  EDSCPESSSAL---EEEEEEEEEEGTDDESPKSSSLGNNMSEPMPNSETEEDTESDRSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW
Sbjct: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Sbjct: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 228

[Close]
BLAST of Carg09042 vs. NCBI nr
Match: XP_023531649.1 (U3 small nucleolar RNA-associated protein 25 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 420.6 bits (1080), Expect = 9.2e-114
Identity = 223/231 (96.54%), Postives = 226/231 (97.84%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD
Sbjct: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           EDSCPESSSAL  EEEEEEEEEEEGTDDESPKSSSLGNNMSE MP++ETEEDTESDRSDT
Sbjct: 61  EDSCPESSSAL--EEEEEEEEEEEGTDDESPKSSSLGNNMSEPMPDNETEEDTESDRSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELEVG HG+PSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW
Sbjct: 121 DQENELEVGSHGNPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           SGTGEC LKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Sbjct: 181 SGTGECFLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 229

[Close]
BLAST of Carg09042 vs. ExPASy TrEMBL
Match: A0A6J1EQL5 (U3 small nucleolar RNA-associated protein 25 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436569 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 1.0e-118
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD
Sbjct: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSE MPNSETEEDTESDRSDT
Sbjct: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSEPMPNSETEEDTESDRSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW
Sbjct: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Sbjct: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 231

[Close]
BLAST of Carg09042 vs. ExPASy TrEMBL
Match: A0A6J1EPX7 (U3 small nucleolar RNA-associated protein 25 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436569 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.8e-116
Identity = 227/231 (98.27%), Postives = 227/231 (98.27%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD
Sbjct: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           EDSCPESSSAL   EEEEEEEEEEGTDDESPKSSSLGNNMSE MPNSETEEDTESDRSDT
Sbjct: 61  EDSCPESSSAL---EEEEEEEEEEGTDDESPKSSSLGNNMSEPMPNSETEEDTESDRSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW
Sbjct: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Sbjct: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 228

[Close]
BLAST of Carg09042 vs. ExPASy TrEMBL
Match: A0A6J1HJW3 (U3 small nucleolar RNA-associated protein 25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465184 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.3e-113
Identity = 221/231 (95.67%), Postives = 222/231 (96.10%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD
Sbjct: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           EDSCPESSSAL      EEEEEEEGTDDESPKSSSLGNNMSE MPN+ETEEDTESDRSDT
Sbjct: 61  EDSCPESSSAL------EEEEEEEGTDDESPKSSSLGNNMSEPMPNNETEEDTESDRSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELEVG HGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW
Sbjct: 121 DQENELEVGSHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           SGTGEC LKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Sbjct: 181 SGTGECFLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 225

[Close]
BLAST of Carg09042 vs. ExPASy TrEMBL
Match: A0A1S3BWL1 (U3 small nucleolar RNA-associated protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494245 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 5.0e-89
Identity = 186/231 (80.52%), Postives = 199/231 (86.15%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKR   EAEELEVF EQSNY+NLLMQLQSCNKDVAASCMKRQRQ EG+SDTEDD
Sbjct: 1   MVKQLVRKREVCEAEELEVFTEQSNYENLLMQLQSCNKDVAASCMKRQRQGEGKSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           ED C ESSSALEEE EEEEEEEEE TDDES +S SLGN+M E + N ETE+D  +D SDT
Sbjct: 61  EDDCSESSSALEEEVEEEEEEEEEVTDDESRRSPSLGNSMYEPVLNDETEDD--ADSSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELE   H  PSTSDITSSFNKHME KLS+ EVENF KMKWKYTWAVPAVGM NCKW
Sbjct: 121 DQENELEFRSHSGPSTSDITSSFNKHMERKLSEGEVENFLKMKWKYTWAVPAVGMPNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           SGTGEC LK+L+ K S+Y+LK RLYEHWLD YK+SGGTDFHSSRQRFFFSL
Sbjct: 181 SGTGECFLKELDVKPSSYDLKLRLYEHWLDTYKSSGGTDFHSSRQRFFFSL 229

[Close]
BLAST of Carg09042 vs. ExPASy TrEMBL
Match: A0A1S3BXS4 (U3 small nucleolar RNA-associated protein 25 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494245 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 9.4e-88
Identity = 186/231 (80.52%), Postives = 199/231 (86.15%), Query Frame = 0 

Query: 1   MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDD 60
           MVKQLVRKR   EAEELEVF EQSNY+NLLMQLQSCNKDVAASCMKRQRQ EG+SDTEDD
Sbjct: 1   MVKQLVRKR-VCEAEELEVFTEQSNYENLLMQLQSCNKDVAASCMKRQRQGEGKSDTEDD 60

Query: 61  EDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETEEDTESDRSDT 120
           ED C ESSSALEEE EEEEEEEEE TDDES +S SLGN+M E + N ETE+D  +D SDT
Sbjct: 61  EDDCSESSSALEEEVEEEEEEEEEVTDDESRRSPSLGNSMYEPVLNDETEDD--ADSSDT 120

Query: 121 DQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKW 180
           DQENELE   H  PSTSDITSSFNKHME KLS+ EVENF KMKWKYTWAVPAVGM NCKW
Sbjct: 121 DQENELEFRSHSGPSTSDITSSFNKHMERKLSEGEVENFLKMKWKYTWAVPAVGMPNCKW 180

Query: 181 SGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           SGTGEC LK+L+ K S+Y+LK RLYEHWLD YK+SGGTDFHSSRQRFFFSL
Sbjct: 181 SGTGECFLKELDVKPSSYDLKLRLYEHWLDTYKSSGGTDFHSSRQRFFFSL 228

[Close]
BLAST of Carg09042 vs. TAIR 10
Match: AT1G17690.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). )

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-32
Identity = 97/233 (41.63%), Postives = 135/233 (57.94%), Query Frame = 0 

Query: 13  EAE-ELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSAL 72
           EAE E  V++E + Y NLL+ L S NK VA    +RQR+EEG+SDTE+DED         
Sbjct: 49  EAESEAMVYREPTQYQNLLVSLGSSNKVVADMNKRRQREEEGKSDTEEDED--------- 108

Query: 73  EEEEEEEEEEEEEGTDD------ESPKS-----SSLGNNMSESMPNSETE-EDTESDRSD 132
              +E+E+EEE  G+DD      E  KS      +LG    ++  +++ + E+ + D  +
Sbjct: 109 ---DEDEDEEENSGSDDLSSTDGEDDKSQGDDQETLGGLTDDTQEDNDNQSEEEDPDDYE 168

Query: 133 TDQE-NELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNC 192
           TD+E +EL          S   S+F++H+ HKLS EEVE  PK KWK+ W  PA  M NC
Sbjct: 169 TDEEVHELSTNGQSFVDASSSISAFSEHLSHKLSSEEVETLPKGKWKFKWESPAFDMPNC 228

Query: 193 KWSGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL 232
           KW GT E  L  +++  + Y LK +LY HWL +YK  GG D  SS++R FFS+
Sbjct: 229 KWKGTSENFLDGIQS-DAPYGLKPKLYNHWLQLYKKCGGKDLDSSKRRKFFSI 268

The following BLAST results are available for this feature:
BLAST of Carg09042 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021708.16.0e-129100.00hypothetical protein SDJN02_15435, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022930084.12.1e-11899.57U3 small nucleolar RNA-associated protein 25 isoform X1 [Cucurbita moschata][more]
KAG6587740.12.1e-11899.57hypothetical protein SDJN03_16305, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022930086.15.8e-11698.27U3 small nucleolar RNA-associated protein 25 isoform X2 [Cucurbita moschata][more]
XP_023531649.19.2e-11496.54U3 small nucleolar RNA-associated protein 25 isoform X1 [Cucurbita pepo subsp. p... [more]
BLAST of Carg09042 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09042 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EQL51.0e-11899.57U3 small nucleolar RNA-associated protein 25 isoform X1 OS=Cucurbita moschata OX... [more]
A0A6J1EPX72.8e-11698.27U3 small nucleolar RNA-associated protein 25 isoform X2 OS=Cucurbita moschata OX... [more]
A0A6J1HJW31.3e-11395.67U3 small nucleolar RNA-associated protein 25 isoform X1 OS=Cucurbita maxima OX=3... [more]
A0A1S3BWL15.0e-8980.52U3 small nucleolar RNA-associated protein 25 isoform X1 OS=Cucumis melo OX=3656 ... [more]
A0A1S3BXS49.4e-8880.52U3 small nucleolar RNA-associated protein 25 isoform X2 OS=Cucumis melo OX=3656 ... [more]
BLAST of Carg09042 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G17690.13.2e-3241.63FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 64..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..88
IPR010678U3 small nucleolar RNA-associated protein 25PANTHERPTHR12933ORF PROTEIN-RELATEDcoord: 11..232

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09042-RACarg09042-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006364 rRNA processing
cellular_component GO:0005730 nucleolus
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0034511 U3 snoRNA binding