Carg08993 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08993
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistone H2A
LocationCarg_Chr02: 9820841 .. 9822602 (+)
RNA-Seq ExpressionCarg08993
SyntenyCarg08993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTACCATTTTGCAGGTTCAAAAATGGCGGGAAAAGGCGGCAAGGGGCTTTTAGCCGCAAAGACTCCAGCTGCTAACAAAGATAAGGACAAGGACAAGAAGAAGCCCATCTCTCGGTCCTCCCGTGCTGGTATACAGGTGTTCTTTTGAATTCTTACTCTGCCTTTTTTTCCTCCAAAATTTGGAAGCAATTGAAACGTCGAAGCATGTTTAATTTTTCCTCATCTTCTGAACACCTATAAATTTCGAATCATTTTGATATTTTACTCGTTTAAGGACATTACAACGACTGAGATAAGGTTATGTTTATGTTGCTGTATTTTGCGATCTTTGTTCCTTGAAATTGTTTCTGTGATAGCATTTTTTGTTGATAGATAAGGATTTTAACATGGGGCTCTGAAATATTTTTCAGTTCTTGGTTTAGGGTATGTGTAAGCTAGTTTTTTATAGGTTGGGCTAACAATTCGCAATTCAAATCCCCATGTAGTTTTATTTTTAAGCTACATGTTGTTGAGATTTGTACAATTATGTTGATGTATCTGCCAATGTGGATCTGTGTTCCTTAAATTTGTACTACAATACAATTTTTTGTTGACAGCTTTGAATTTTAATACGGGTCTCTGAAAATTCTTCTAATTATCTGCTTTTGGAGGGATGTGCAAGCTAGTTTTTGTGGGTTGGGCTGAAAATTCGCAATTCACTTTTTAATCTACCTGTAGTTAAGCTTAGTACAATTATGTTGTACCCTTTTTTATTGACAGCCTTGAACTTTAACATGGGACTCTGAAATCTATTTTAATTTTTTTTTTTTAGGTGAGAAAGTGCAAGCTAGATTTTTTTTTTCTTTTCTTTTTTTTGTAGGTTGGGCTGAAAAATTCTGAATTAAAATGCTCTAGTTTTTGAGGAACATGTAGTTAAGATTAGTATAACTAACTATGTTGATGTATCTACACCTTGTGATCTATGTTCTTCGAACTTCGACTGTATTGCCATTTTTTGTTGACAGCTTTGAATTTAACTAGTGTTTTGCGGGTTGGGATAAAAGTTTAGAATTCAAATGCCCATGTACTATGAGTATTGTGATATTTTGTAGTTAACATGTGCTTTGAATTTAACTAGTGTTTTGTAGTTAACATGATTTCATTGACGTTGGTGTCTCTGAGTATTGTGATATTTGTTCGTTTAATTTTTATTCTAATAGCACATTTTGTTATCAGCTTTGAATTTTAACATGGGGCTCTGAAATGTAATCTTCTGTAAACTATTATTTGTTTTATGCCGAAAGTGTAAGCTAGTGTTTTGTGGGCTGGGCTGAAAATTTACAATTCAAATGCCCTTGTAGTGTTTTATTTGTAAGCTACATTTGGGTTGAGTTCAAATGATTTCACTTAATTTGGGGCCTTGAATCGCACCAGTGTTGGGTCACTTTAACTTATGTAATCTCCGGATTGTGGGGTTCTAGTTCCCAGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGACGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

mRNA sequence

ATGCTCTACCATTTTGCAGGTGAGAAAGTTGGGCTGAAAAATTCTGAATTAAAATGCTCTATGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGACGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

Coding sequence (CDS)

ATGCTCTACCATTTTGCAGGTGAGAAAGTTGGGCTGAAAAATTCTGAATTAAAATGCTCTATGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGACGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

Protein sequence

MLYHFAGEKVGLKNSELKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Homology
[Close]
BLAST of Carg08993 vs. NCBI nr
Match: KAG7036343.1 (Histone H2A variant 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MLYHFAGEKVGLKNSELKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLEL 60
           MLYHFAGEKVGLKNSELKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLEL
Sbjct: 1   MLYHFAGEKVGLKNSELKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLEL 60

Query: 61  AGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 61  AGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 116

[Close]
BLAST of Carg08993 vs. NCBI nr
Match: KAB1208904.1 (Histone H2A variant 1 [Morella rubra])

HSP 1 Score: 187.2 bits (474), Expect = 8.0e-44
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 13  KNSELKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKR 72
           +N  ++  +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKR
Sbjct: 59  RNGGVQFPVGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKR 118

Query: 73  ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK SKD
Sbjct: 119 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKD 162

[Close]
BLAST of Carg08993 vs. NCBI nr
Match: XP_023511677.1 (histone H2A variant 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]
BLAST of Carg08993 vs. NCBI nr
Match: XP_022145883.1 (histone H2A variant 1 [Momordica charantia] >XP_022145884.1 histone H2A variant 1 [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]
BLAST of Carg08993 vs. NCBI nr
Match: XP_022963902.1 (histone H2A variant 1-like [Cucurbita moschata] >KAG6571446.1 Histone H2A variant 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011211.1 Histone H2A variant 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]
BLAST of Carg08993 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.4e-43
Identity = 88/96 (91.67%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LKTR+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK +K+
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

[Close]
BLAST of Carg08993 vs. ExPASy Swiss-Prot
Match: Q9SII0 (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-42
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LK R+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +KD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]
BLAST of Carg08993 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-42
Identity = 91/113 (80.53%), Postives = 98/113 (86.73%), Query Frame = 0 

Query: 7   GEKVGLKNSE---LKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGN 66
           G+K  +  S    L+  +GRIHR LK R  ANGRVGATAAVY A+ILEYLTAEVLELAGN
Sbjct: 25  GKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGN 84

Query: 67  ASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           ASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SK+
Sbjct: 85  ASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137

[Close]
BLAST of Carg08993 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-42
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LK R+SANGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 44  VGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQL 103

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK +K+
Sbjct: 104 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of Carg08993 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-42
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 17  LKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPR 76
           L+  +GRIHR LK+R SA+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 39  LQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 98

Query: 77  HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK SK+
Sbjct: 99  HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138

[Close]
BLAST of Carg08993 vs. ExPASy TrEMBL
Match: A0A6A1V7V9 (Histone H2A OS=Morella rubra OX=262757 GN=CJ030_MR6G006423 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.9e-44
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 13  KNSELKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKR 72
           +N  ++  +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKR
Sbjct: 59  RNGGVQFPVGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKR 118

Query: 73  ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK SKD
Sbjct: 119 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKD 162

[Close]
BLAST of Carg08993 vs. ExPASy TrEMBL
Match: A0A6J1K687 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111491533 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.6e-44
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]
BLAST of Carg08993 vs. ExPASy TrEMBL
Match: A0A1S3BLU8 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103491260 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.6e-44
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]
BLAST of Carg08993 vs. ExPASy TrEMBL
Match: A0A6J1CX53 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111015234 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.6e-44
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 136

[Close]
BLAST of Carg08993 vs. ExPASy TrEMBL
Match: A0A5A7UND9 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00940 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.6e-44
Identity = 98/111 (88.29%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 9   KVGLKNS---ELKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNAS 68
           + G++NS    L+  + RIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNAS
Sbjct: 34  RAGIQNSIAHVLEQHLRRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNAS 93

Query: 69  KDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           KDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Sbjct: 94  KDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 144

[Close]
BLAST of Carg08993 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 174.9 bits (442), Expect = 3.8e-44
Identity = 88/96 (91.67%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LKTR+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSLINK +K+
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136

[Close]
BLAST of Carg08993 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 173.7 bits (439), Expect = 8.6e-44
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LK R+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +KD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]
BLAST of Carg08993 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 173.7 bits (439), Expect = 8.6e-44
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LK R+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +KD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]
BLAST of Carg08993 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 173.7 bits (439), Expect = 8.6e-44
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0 

Query: 21  MGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 80
           +GRIHR LK R+SA+GRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
Sbjct: 41  VGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100

Query: 81  AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           AIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +KD
Sbjct: 101 AIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136

[Close]
BLAST of Carg08993 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 )

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-42
Identity = 85/100 (85.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 17  LKCSMGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPR 76
           L+  +GR+HR LKTR +A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PR
Sbjct: 35  LQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPR 94

Query: 77  HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD 117
           HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++K+
Sbjct: 95  HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134

The following BLAST results are available for this feature:
BLAST of Carg08993 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036343.11.4e-56100.00Histone H2A variant 1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAB1208904.18.0e-4491.35Histone H2A variant 1 [Morella rubra][more]
XP_023511677.11.4e-4398.96histone H2A variant 1-like [Cucurbita pepo subsp. pepo][more]
XP_022145883.11.4e-4398.96histone H2A variant 1 [Momordica charantia] >XP_022145884.1 histone H2A variant ... [more]
XP_022963902.11.4e-4398.96histone H2A variant 1-like [Cucurbita moschata] >KAG6571446.1 Histone H2A varian... [more]
BLAST of Carg08993 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O236285.4e-4391.67Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1[more]
Q9SII01.2e-4290.63Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2... [more]
Q84MP71.6e-4280.53Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
Q8S8572.1e-4290.63Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g... [more]
Q8H7Y82.7e-4288.00Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
BLAST of Carg08993 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A1V7V93.9e-4491.35Histone H2A OS=Morella rubra OX=262757 GN=CJ030_MR6G006423 PE=3 SV=1[more]
A0A6J1K6876.6e-4498.96Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111491533 PE=3 SV=1[more]
A0A1S3BLU86.6e-4498.96Histone H2A OS=Cucumis melo OX=3656 GN=LOC103491260 PE=3 SV=1[more]
A0A6J1CX536.6e-4498.96Histone H2A OS=Momordica charantia OX=3673 GN=LOC111015234 PE=3 SV=1[more]
A0A5A7UND96.6e-4488.29Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00940 PE... [more]
BLAST of Carg08993 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G54560.13.8e-4491.67histone H2A 11 [more]
AT2G38810.18.6e-4490.63histone H2A 8 [more]
AT2G38810.38.6e-4490.63histone H2A 8 [more]
AT2G38810.28.6e-4490.63histone H2A 8 [more]
AT1G52740.12.1e-4285.00histone H2A protein 9 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 37..52
score: 69.94
coord: 66..80
score: 65.78
coord: 52..65
score: 84.63
coord: 7..29
score: 29.52
coord: 93..111
score: 51.98
IPR002119Histone H2ASMARTSM00414h2a4coord: 4..116
e-value: 1.9E-52
score: 190.3
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 86..115
e-value: 8.5E-11
score: 41.4
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 21..85
e-value: 6.7E-16
score: 58.9
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 8..116
e-value: 1.3E-46
score: 159.5
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 15..93
NoneNo IPR availablePANTHERPTHR23430:SF300HISTONE H2Acoord: 15..114
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 15..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08993-RACarg08993-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity