Carg08982 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08982
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 9778243 .. 9778913 (-)
RNA-Seq ExpressionCarg08982
SyntenyCarg08982
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGGAAGCATAGCTCAATAATTAAGGCACATGTGTCTTCAAGGTTAAAGGTTCAAAATTTTCCACACTTTCCTCCCGTTGAACCAAAAATAAAAAAAGAACCAGGTTTGAAAATCCTAGTTAGATTAGTTACATTGATGATTTGAAGTGTAGCATTTAGTAAGATTGTTTAGGGAACTACTTGGTTTTTGACTTGTGTGTGAAAGAACAGCTGATTTCCACTTTATTTTTACCCAACTAAACGGTGATGCAGTAGAAAAGGAAAAGTGAAATGATGAATATGCAGCTGCACATCGGTGACGAGAAGTTTCATTGTCTGGTAAATTTTCATGATTTTCATCCTTCTGTTGCCTTCAATGATTATCTTGAGTCTGTTTCCCAAAGAAAGAAAAGATGAAGTATTTTGTCTTCTGCAAAAAAAAAAAAAAAAAACCAGCTATGTGCAGCAAACTACAAGAGTTGGTGCTTTTCTATGTATTGTTTTTTTGTAGGTATGTGAGCAACAAATTATTTGTTCAGATGAACAGATGTCGACTTCAAATGGTGAAAAGTTTGGTTCACAAAATGCCATGCAATTTGAAAATGTAAAGACGTTAAAGAACATTCAAGATTCTGCTTATCTTACATCTTTTTTCAATCTCTTTCTTCATCGTCTTCTCTTATGGATATAG

mRNA sequence

TGAGGAAGCATAGCTCAATAATTAAGGCACATGTGTCTTCAAGGTTAAAGGTTCAAAATTTTCCACACTTTCCTCCCGTTGAACCAAAAATAAAAAAAGAACCAGGTTTGAAAATCCTAGTTAGATTAGTTACATTGATGATTTGAAGTGTAGCATTTAGTAAGATTGTTTAGGGAACTACTTGGTTTTTGACTTGTGTGTGAAAGAACAGCTGATTTCCACTTTATTTTTACCCAACTAAACGGTGATGCAGTAGAAAAGGAAAAGTGAAATGATGAATATGCAGCTGCACATCGGTGACGAGAAGTTTCATTGTCTGGTATGTGAGCAACAAATTATTTGTTCAGATGAACAGATGTCGACTTCAAATGGTGAAAAGTTTGGTTCACAAAATGCCATGCAATTTGAAAATGTAAAGACGTTAAAGAACATTCAAGATTCTGCTTATCTTACATCTTTTTTCAATCTCTTTCTTCATCGTCTTCTCTTATGGATATAG

Coding sequence (CDS)

ATGATGAATATGCAGCTGCACATCGGTGACGAGAAGTTTCATTGTCTGGTATGTGAGCAACAAATTATTTGTTCAGATGAACAGATGTCGACTTCAAATGGTGAAAAGTTTGGTTCACAAAATGCCATGCAATTTGAAAATGTAAAGACGTTAAAGAACATTCAAGATTCTGCTTATCTTACATCTTTTTTCAATCTCTTTCTTCATCGTCTTCTCTTATGGATATAG

Protein sequence

MMNMQLHIGDEKFHCLVCEQQIICSDEQMSTSNGEKFGSQNAMQFENVKTLKNIQDSAYLTSFFNLFLHRLLLWI
Homology
[Close]
BLAST of Carg08982 vs. NCBI nr
Match: KAG7036333.1 (hypothetical protein SDJN02_03136 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.5 bits (389), Expect = 3.7e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MMNMQLHIGDEKFHCLVCEQQIICSDEQMSTSNGEKFGSQNAMQFENVKTLKNIQDSAYL 60
          MMNMQLHIGDEKFHCLVCEQQIICSDEQMSTSNGEKFGSQNAMQFENVKTLKNIQDSAYL
Sbjct: 1  MMNMQLHIGDEKFHCLVCEQQIICSDEQMSTSNGEKFGSQNAMQFENVKTLKNIQDSAYL 60

Query: 61 TSFFNLFLHRLLLWI 76
          TSFFNLFLHRLLLWI
Sbjct: 61 TSFFNLFLHRLLLWI 75

The following BLAST results are available for this feature:
BLAST of Carg08982 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036333.13.7e-34100.00hypothetical protein SDJN02_03136 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg08982 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08982 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08982 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08982-RACarg08982-RAmRNA