Carg08935 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08935
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 9572352 .. 9573268 (+)
RNA-Seq ExpressionCarg08935
SyntenyCarg08935
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGTGGTTGTGCTATCTTTGGCAGGAAAAAAAATCACAAAAAGAAAGTTCCAGAAGAAAACTCTGTTCTCGTTTTTTTATACGGCTACCTCATTGCTTTTCTTCAAAAGGTTACAATTTTTGTTTTTTATTCTTATTTTGTGTTGTGGTAATAACTTTATGACTAACTAGTAACTATGTTGCTGTTAATTTTGACAGGAAAACACGTAAAAAAAAGAAAGTTCGAGAAATAAGGTATGAAAATTTTATTTGTATGATTTTGTTGGAATGTTTGATTTCGTCAATATGATGATTTATGCAAGAGGAGGAGAGGAGAAATAAATTCTTATGAAAAAAATGATGTAATGGATGAAAAATAAGTATGAAAAACCTAAATATATTTTAAAAGTCTCACAATGTATAGTTAAAATTATAACCATGATAACAATCATACCTAGTTCAAATCCTAAAACCCCTAAATCTCTTAAAACTCTATGTATGTTCTTTTTTTATTTTAGTGTTACAAATTATGTATGATAAAAATGTAAATAAAGAGTTTGGTTCAAATAAATTTGAATTTCAGTTGTTGAGTTTGGTTATAATAAGAGATAAGTTTGGATTAAAAAAATTAAGCTAAATTCGTTATTAATTTCCTTTATAAAATTATCTATAGATGGAACTTATTTGATCAAGTGAATAACAATACACATTTCCTATTCGTTCTAAAATTATGTGCTTGTTCGAATATCCAAAATGTACAAGTAATATATTTTCTAATGCGTACTAGTGTGTACTGTATAGGACAAAGTAGGAGAGCAGAACTTCAGAAATTATGGTCTTCTAGGTAAGAAGGGCTCCCTGCTCTTATCGTGCGAGTGAAACTGCAATTTTTGACATGCTCGGTGTGTTGCTGCTACATCCGTATTATCCGTAA

mRNA sequence

ATGGCCGGTGGTTGTGCTATCTTTGGCAGGAAAAAAAATCACAAAAAGAAAGTTCCAGAAGAAAACTCTGTTCTCGTTTTTTTATACGGCTACCTCATTGCTTTTCTTCAAAAGGTAAGAAGGGCTCCCTGCTCTTATCGTGCGAGTGAAACTGCAATTTTTGACATGCTCGGTGTGTTGCTGCTACATCCGTATTATCCGTAA

Coding sequence (CDS)

ATGGCCGGTGGTTGTGCTATCTTTGGCAGGAAAAAAAATCACAAAAAGAAAGTTCCAGAAGAAAACTCTGTTCTCGTTTTTTTATACGGCTACCTCATTGCTTTTCTTCAAAAGGTAAGAAGGGCTCCCTGCTCTTATCGTGCGAGTGAAACTGCAATTTTTGACATGCTCGGTGTGTTGCTGCTACATCCGTATTATCCGTAA

Protein sequence

MAGGCAIFGRKKNHKKKVPEENSVLVFLYGYLIAFLQKVRRAPCSYRASETAIFDMLGVLLLHPYYP
Homology
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BLAST of Carg08935 vs. NCBI nr
Match: KAG7036286.1 (hypothetical protein SDJN02_03089, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.7 bits (361), Expect = 5.9e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MAGGCAIFGRKKNHKKKVPEENSVLVFLYGYLIAFLQKVRRAPCSYRASETAIFDMLGVL 60
          MAGGCAIFGRKKNHKKKVPEENSVLVFLYGYLIAFLQKVRRAPCSYRASETAIFDMLGVL
Sbjct: 1  MAGGCAIFGRKKNHKKKVPEENSVLVFLYGYLIAFLQKVRRAPCSYRASETAIFDMLGVL 60

Query: 61 LLHPYYP 68
          LLHPYYP
Sbjct: 61 LLHPYYP 67

The following BLAST results are available for this feature:
BLAST of Carg08935 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036286.15.9e-31100.00hypothetical protein SDJN02_03089, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg08935 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08935 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08935 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08935-RACarg08935-RAmRNA