Carg08910 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08910
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein FAM98A-like
LocationCarg_Chr02: 9410223 .. 9413686 (-)
RNA-Seq ExpressionCarg08910
SyntenyCarg08910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCTTTCCCCCATTTCTTTCTTCCAGCTCAAAACCATACACAGACACAGACACTCACACTCAAGCTTTCTCCCCTTGCCCGTTAGGGTTCCTGATTTCTTCATCTTCTTCCCTCTTTCGCTTCCCGCCTTGCTGAAGCACTGCCATGGATAGATACCAGAAGGTCGAGAAACCTAAGCCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGCCAAGGCGCTATCCGAAACTACATCACTTATGCTTCCACCCTACTGCAGGTACCATGTCACTGTTTCTTTGATGGATTCTCATTATCTATTGTATTTCATTTCGTCTTTTGTTGGAGTATCTTTGTTTTATTCTTTCTACTGATTTTTCGTAATGCTGAATCTGTCTTATGAGGTTAGGTTTCTGAGTGTGGATTGTGGATACATGAGACGTATTAGTCAAGTTTTAGGATATTTTCTTGGTTTCTATTAGTTTTTGCATTTTCTTTTTGTAATGTTAGTCGGCATTTGTTGAGTTGGTATATTGCTGGTGTATTGATTTCGTTTCTTCTACTTGTGATTTCTGAGGGATGTTTGCTCGCTGGCTGACGCTTTGCCGTAATTTGCATTGACTGTGAAAGTGTCTGTTAGTTTAATGCACGAGTTATGGTACATCGTAATCTGCGATAGCTCGTTAGATGTCATCAGTTCTGATTGATTATCTACAGTCCTTATAGTTTTTTCTTAAGTCATCGATCATGTGGAGGTAGGTGTTTCTGTATTAACTTGACGTGATTTTTGGCTCAGGTTTCTTCCGGTTGTATACATTTTTTCAATGTGTAAATTGACCGTCAAGATACATTACGTTATTGTTTTTCTTATAAAAAGAATCACATACACTACAGCTCATGTTATACATTGTAATATCATGGAGTTTGGTGTTTCTCTATTATATTGGCTTGATTTTTTGGATCATAGATTTTTTTCAATTTGTATATTTCTAATTTTTTATTAGAAGAATTTAATTATTAATGTTATTCATCGGATCAAGTTTAATGTTCCATTGTTATATGTGCAATTAGTTGATGATTTCAATTGCTATTTTTTTTATTCAGGCTAGACTTGGATTGCAAAGCTTAGCTATATTTAATTGTTTATTCAGACATATTTCTAAGCGTGTTGCTCAAGTGAGAATGTACCTTTTATGTTTTGGTTTAATATATCACATTTTTCACTCATCCAGGACAAACGTGTTAGAGAGATAGTCTTGAAAGCCATGGGGCAGGCAATCAGTAAAGGTGTTGCCATTGCAGAAATTTTGAAGGTTTGAGTTCTTTACGTTCTGCAACTGTGCATGTTTAATATTTTATACTCAGCAGGCCAGTTTCATCCTCTAACAGAAGCGAACTCCACGATTGCATCAAGAAACTTCCATCAGCTCAGTGAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTATACCGTAAGTTTTTTAATATCTAGGATTCTCTGTTAATTGCCTAATAATGACCTATGCACTTCCTGCGGGTTGGTTTCTTTATGCTTGTATGCACAACTTTGCATTGTGTGGCTTCGTACTCTTTAGTTTGCAATTGCAGATTTTTTTATTGCTGCGAGAATGTAGCTTTATCATACTGTTCTGCAGATGTTTAACAAATAATCTCTGAGATATCTGCAGCGTGGAGATGACTCGCCATGTCTCAATGATATCAATTACCTTATCAAATCGAGAGCTAAATAAAAACGCTCCTGGGTATGATAATCTAGTCCTTAATGTACTGCTTTCCATTTTTTGTGCTGAAGTTTCTTTACGAGTGTTTAAGAATAAAAAAATGTTATTATTTGTAGGTACCAAGCTCCACATGTTGTGGAACAGCCAAAGCAACAATATAATCTGCAGCAGCAACAGCAACAGCAACAGCCAAGACAGTCTCGTCCTTATTACAATGCTATTAATGAAGGTGATAGTTCAATCTGAAAACGATTTATTGTTTATTTGTGAAAATGTTATATCTTCCACCCTACATAGTGCGGCAACAATACATAAAAAAAAGGCATGGAAACAGAATCAAGAGAATTTAGAATTCTTGGGATCCACCATACGCCATTTCGTAAGTAAAGAAATCAAATATTTAAGGTTAAATCTTCTTGAGCTTCCAGTATCTCATTACCAACCTTCCCTTAAAAACAGGCGCCCAAACCCCCCGGGGGGGTTGATCCCAGTGAATTTGAGCTTTGGGATGTTAGGGCAGGACTAGATGTTGGTTGAAGGTTTGAAATACTGGGTGGGAATCTGTAGGAAAGGAATCAGTTGATGTTACTGGAGAATGACGTAGTTTCATACAATAAACACAAACCACACAAATCTCCCCCCGAGATTGGCCACACCCAATCGATTCTAATTCATTGGGAAGGTCAAGTCTGTGCCTGGACAATCTATAAACAATGTTGAATGGAGACTGAACTATTAACTGTTGGATTATGGTTCTCTCATACTTGAACTCTGAGACATTCCTGCACATATAGCAGATCCATATGGCCAAAGCCGAGGTCGTGGTAGAGGGAGGGGACGTGGTTGGGGCAGAGGTGGATATGGAAACTACCAAGGAGGATATGGCAACTACCAGGGTGGATATGGAAACTACCAGGGTGGATATGGCAACTACCAAGGCGGATCTGGTAACGGCTACCAAGGTGGATCTGGTAACGGCTACCAAGGTGGATCTGGCGACAACTATCAAGGTGAATATGTTTTCCTCTTTCATTTTCATTCACGCTAATCCTTGAGTACAGCCTAATATATAGTTTCTATTTTTTTGTCAACATAGATAATGGTGGGTACTCAAACTGGGGTAGAGGAGGTGGGCGAGGCAGAGGTTGGGCATATCGTGGTAAGTTTCTTTCACAACTTTCTTTTTCTTTTCAGAATCGTTTGTTGATTAGTGAGGCCAGGCAACTGTCATTTTGCTGACTTCGTTGATGTTTGGTGCCACCAAATTATTGTTAAGCTCTTGTGATCTTTACTTTAAAGATTTCTTAGAACAGAGAGATGAAACAATGATGTGGTTAGTATGGATCGAGTTAAGTTGTTTGAATCAATTGCATTCCTTTCAGGATCTGGCTATGATAGAGGCAGAGGGGGTAGGGGTTACATTCGAGGTCGGGGGCGGATGGGTGGACGAACAAGGGGCGGTGGTGTCGGTAGAAACCAGGCTTAGTTAAAAAGTTATTCGTTCTTTTTACTTGAGCTAAATGCTTTGCCTTGGCCAGTAAAGATGCTTTTTATCTGAATATAATGTTTTTAATAGCGTGGAAATTTGGCTTCTTAGAGCGTTGTTGAGCAGTAATTTCTTCTTTTGCCTGTGGTAATGTGGTGGGCAAGGTTGTTTTTGTTTATGTTTTGCATTTAGCTTTATAAGAGCAGTCAGTTCGGTTCATTCAGTGTAATTTGTTTTTTTTT

mRNA sequence

CTCCTTTCCCCCATTTCTTTCTTCCAGCTCAAAACCATACACAGACACAGACACTCACACTCAAGCTTTCTCCCCTTGCCCGTTAGGGTTCCTGATTTCTTCATCTTCTTCCCTCTTTCGCTTCCCGCCTTGCTGAAGCACTGCCATGGATAGATACCAGAAGGTCGAGAAACCTAAGCCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGCCAAGGCGCTATCCGAAACTACATCACTTATGCTTCCACCCTACTGCAGGACAAACGTGTTAGAGAGATAGTCTTGAAAGCCATGGGGCAGGCAATCAGTAAAGGTGTTGCCATTGCAGAAATTTTGAAGAAGCGAACTCCACGATTGCATCAAGAAACTTCCATCAGCTCAGTGAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTATACCCGTGGAGATGACTCGCCATGTCTCAATGATATCAATTACCTTATCAAATCGAGAGCTAAATAAAAACGCTCCTGGGTACCAAGCTCCACATGTTGTGGAACAGCCAAAGCAACAATATAATCTGCAGCAGCAACAGCAACAGCAACAGCCAAGACAGTCTCGTCCTTATTACAATGCTATTAATGAAGATCCATATGGCCAAAGCCGAGGTCGTGGTAGAGGGAGGGGACGTGGTTGGGGCAGAGGTGGATATGGAAACTACCAAGGAGGATATGGCAACTACCAGGGTGGATATGGAAACTACCAGGGTGGATATGGCAACTACCAAGGCGGATCTGGTAACGGCTACCAAGGTGGATCTGGTAACGGCTACCAAGGTGGATCTGGCGACAACTATCAAGATAATGGTGGGTACTCAAACTGGGGTAGAGGAGGTGGGCGAGGCAGAGGTTGGGCATATCGTGGATCTGGCTATGATAGAGGCAGAGGGGGTAGGGGTTACATTCGAGGTCGGGGGCGGATGGGTGGACGAACAAGGGGCGGTGGTGTCGGTAGAAACCAGGCTTAGTTAAAAAGTTATTCGTTCTTTTTACTTGAGCTAAATGCTTTGCCTTGGCCAGTAAAGATGCTTTTTATCTGAATATAATGTTTTTAATAGCGTGGAAATTTGGCTTCTTAGAGCGTTGTTGAGCAGTAATTTCTTCTTTTGCCTGTGGTAATGTGGTGGGCAAGGTTGTTTTTGTTTATGTTTTGCATTTAGCTTTATAAGAGCAGTCAGTTCGGTTCATTCAGTGTAATTTGTTTTTTTTT

Coding sequence (CDS)

ATGGATAGATACCAGAAGGTCGAGAAACCTAAGCCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGCCAAGGCGCTATCCGAAACTACATCACTTATGCTTCCACCCTACTGCAGGACAAACGTGTTAGAGAGATAGTCTTGAAAGCCATGGGGCAGGCAATCAGTAAAGGTGTTGCCATTGCAGAAATTTTGAAGAAGCGAACTCCACGATTGCATCAAGAAACTTCCATCAGCTCAGTGAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTATACCCGTGGAGATGACTCGCCATGTCTCAATGATATCAATTACCTTATCAAATCGAGAGCTAAATAAAAACGCTCCTGGGTACCAAGCTCCACATGTTGTGGAACAGCCAAAGCAACAATATAATCTGCAGCAGCAACAGCAACAGCAACAGCCAAGACAGTCTCGTCCTTATTACAATGCTATTAATGAAGATCCATATGGCCAAAGCCGAGGTCGTGGTAGAGGGAGGGGACGTGGTTGGGGCAGAGGTGGATATGGAAACTACCAAGGAGGATATGGCAACTACCAGGGTGGATATGGAAACTACCAGGGTGGATATGGCAACTACCAAGGCGGATCTGGTAACGGCTACCAAGGTGGATCTGGTAACGGCTACCAAGGTGGATCTGGCGACAACTATCAAGATAATGGTGGGTACTCAAACTGGGGTAGAGGAGGTGGGCGAGGCAGAGGTTGGGCATATCGTGGATCTGGCTATGATAGAGGCAGAGGGGGTAGGGGTTACATTCGAGGTCGGGGGCGGATGGGTGGACGAACAAGGGGCGGTGGTGTCGGTAGAAACCAGGCTTAG

Protein sequence

MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKGVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKNAPGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRGGYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWGRGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA
Homology
BLAST of Carg08910 vs. NCBI nr
Match: KAG7036262.1 (Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 525.8 bits (1353), Expect = 2.4e-145
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180
           APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG
Sbjct: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180

Query: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWG 240
           GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWG
Sbjct: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWG 240

Query: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 287
           RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA
Sbjct: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 286

BLAST of Carg08910 vs. NCBI nr
Match: XP_022930955.1 (glycine-rich RNA-binding protein 10-like [Cucurbita moschata])

HSP 1 Score: 519.6 bits (1337), Expect = 1.7e-143
Identity = 284/286 (99.30%), Postives = 285/286 (99.65%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180
           APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG
Sbjct: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180

Query: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWG 240
           GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGN YQGGSGNGYQGGSGDNYQDNGGYSNWG
Sbjct: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGN-YQGGSGNGYQGGSGDNYQDNGGYSNWG 240

Query: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 287
           RGGGRGRGWAYRGSGYDRGRGGRGY+RGRGRMGGRTRGGGVGRNQA
Sbjct: 241 RGGGRGRGWAYRGSGYDRGRGGRGYVRGRGRMGGRTRGGGVGRNQA 285

BLAST of Carg08910 vs. NCBI nr
Match: XP_022995596.1 (protein FAM98A-like [Cucurbita maxima])

HSP 1 Score: 503.8 bits (1296), Expect = 9.6e-139
Identity = 279/286 (97.55%), Postives = 282/286 (98.60%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPESPI+ENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG
Sbjct: 1   MDRYQKVEKPKPESPISENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180
           APGYQAP+VVEQPKQQYNL  QQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG
Sbjct: 121 APGYQAPNVVEQPKQQYNL--QQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180

Query: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWG 240
           GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGN YQGGSGNGYQGGSGDNYQDNGG+SNWG
Sbjct: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGN-YQGGSGNGYQGGSGDNYQDNGGFSNWG 240

Query: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 287
           RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRG GVGRNQA
Sbjct: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGSGVGRNQA 283

BLAST of Carg08910 vs. NCBI nr
Match: KAG6606323.1 (Ribonuclease P protein subunit p25-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 502.7 bits (1293), Expect = 2.1e-138
Identity = 277/286 (96.85%), Postives = 277/286 (96.85%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180
           APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG
Sbjct: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180

Query: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWG 240
           GYGNYQGGYGNYQGGYGNYQGG GN        YQGGSGNGYQGGSGDNYQDNGGYSNWG
Sbjct: 181 GYGNYQGGYGNYQGGYGNYQGGSGN--------YQGGSGNGYQGGSGDNYQDNGGYSNWG 240

Query: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 287
           RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA
Sbjct: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 278

BLAST of Carg08910 vs. NCBI nr
Match: XP_023533405.1 (keratin, type I cytoskeletal 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.9 bits (1291), Expect = 3.6e-138
Identity = 282/293 (96.25%), Postives = 283/293 (96.59%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTR+VSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRYVSMISITLSNRELNKN 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGR- 180
           APGYQAPHVVEQPKQQYNL  QQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGR 
Sbjct: 121 APGYQAPHVVEQPKQQYNL--QQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180

Query: 181 ------GGYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDN 240
                 GGYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNG QGGSGNGYQGGSGDNYQDN
Sbjct: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNG-QGGSGNGYQGGSGDNYQDN 240

Query: 241 GGYSNWGRGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 287
           GGYSNWGRGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA
Sbjct: 241 GGYSNWGRGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 290

BLAST of Carg08910 vs. ExPASy TrEMBL
Match: A0A6J1EY76 (glycine-rich RNA-binding protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437293 PE=4 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 8.2e-144
Identity = 284/286 (99.30%), Postives = 285/286 (99.65%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180
           APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG
Sbjct: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180

Query: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWG 240
           GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGN YQGGSGNGYQGGSGDNYQDNGGYSNWG
Sbjct: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGN-YQGGSGNGYQGGSGDNYQDNGGYSNWG 240

Query: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 287
           RGGGRGRGWAYRGSGYDRGRGGRGY+RGRGRMGGRTRGGGVGRNQA
Sbjct: 241 RGGGRGRGWAYRGSGYDRGRGGRGYVRGRGRMGGRTRGGGVGRNQA 285

BLAST of Carg08910 vs. ExPASy TrEMBL
Match: A0A6J1K2C9 (protein FAM98A-like OS=Cucurbita maxima OX=3661 GN=LOC111491085 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.6e-139
Identity = 279/286 (97.55%), Postives = 282/286 (98.60%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPESPI+ENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG
Sbjct: 1   MDRYQKVEKPKPESPISENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180
           APGYQAP+VVEQPKQQYNL  QQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG
Sbjct: 121 APGYQAPNVVEQPKQQYNL--QQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180

Query: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWG 240
           GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGN YQGGSGNGYQGGSGDNYQDNGG+SNWG
Sbjct: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGN-YQGGSGNGYQGGSGDNYQDNGGFSNWG 240

Query: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 287
           RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRG GVGRNQA
Sbjct: 241 RGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGSGVGRNQA 283

BLAST of Carg08910 vs. ExPASy TrEMBL
Match: A0A6J1E011 (protein FAM98A-like OS=Momordica charantia OX=3673 GN=LOC111026164 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.4e-127
Identity = 263/293 (89.76%), Postives = 270/293 (92.15%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIV KAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVFKAMGQAISKA 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGL+PVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180
           +PGYQAPH VEQPKQQ+N  QQQQQQQPRQ+RPYYNA+NEDPYGQSRGRGRGRGRGWGRG
Sbjct: 121 SPGYQAPHFVEQPKQQFN-YQQQQQQQPRQARPYYNAVNEDPYGQSRGRGRGRGRGWGRG 180

Query: 181 GYGNYQGGYGNYQGGYGNYQGGYGNY-------QGGSGNGYQGGSGNGYQGGSGDNYQDN 240
           GYGNYQGGYGNYQGGYG+YQGGYG Y       QGGSGN  QGGSGN YQGGSG  YQDN
Sbjct: 181 GYGNYQGGYGNYQGGYGHYQGGYGQYQGGSGNCQGGSGNYQQGGSGNNYQGGSG-YYQDN 240

Query: 241 GGYSNWGRGGGRGRGWAYRGSGYDRGRGGRGYIRGRGRMGGRTRGGGVGRNQA 287
           GGYSNWGRGGGRGRGW YRG+GYDRGRGGRGY RGRGRMGGRTRGGG GR QA
Sbjct: 241 GGYSNWGRGGGRGRGWTYRGTGYDRGRGGRGYGRGRGRMGGRTRGGGAGRTQA 291

BLAST of Carg08910 vs. ExPASy TrEMBL
Match: A0A6J1E3H2 (ribonuclease P protein subunit p25-like protein OS=Momordica charantia OX=3673 GN=LOC111026142 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 3.2e-116
Identity = 247/291 (84.88%), Postives = 258/291 (88.66%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKR  RLHQET+ISSVSITDVWEPIEEGL+PVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180
           +PGYQAPH VEQPKQQYN QQQQ Q QPRQ R Y+NA+NEDPYGQ RGRGRGRGRGWGRG
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQQQLQPQPRQPRTYHNAVNEDPYGQGRGRGRGRGRGWGRG 180

Query: 181 GYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNGGYSNWG 240
           GYGNYQGGYGNYQGGYG+YQGGYG+YQGG  N         YQGG G  YQDNGGYSNWG
Sbjct: 181 GYGNYQGGYGNYQGGYGHYQGGYGHYQGGPDN---------YQGGPGGYYQDNGGYSNWG 240

Query: 241 RGGGRGR-GWAYRGSGYDRGR--GGRGYIRGRGRMGGRTRG--GGVGRNQA 287
           RGGGR R GWAYRG+GY+RGR  GGRGY RGRGRMGGRTRG  GG G +QA
Sbjct: 241 RGGGRSRGGWAYRGAGYERGRGGGGRGYGRGRGRMGGRTRGGSGGGGGDQA 282

BLAST of Carg08910 vs. ExPASy TrEMBL
Match: A0A6J1HFQ0 (protein FAM98A isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111463892 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 4.2e-116
Identity = 251/293 (85.67%), Postives = 264/293 (90.10%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           V+IAEILKKRTP+LHQETSISSVSI DVWEPIEEGL+PVEMTRHVSMISITLSNRELNK+
Sbjct: 61  VSIAEILKKRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKD 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGR--GRGRGWG 180
           +PGYQAP  VEQPKQQY   +QQQQQQPRQSRPYYNA+NEDPYGQSRGRGR  GRGRGWG
Sbjct: 121 SPGYQAPQFVEQPKQQY---KQQQQQQPRQSRPYYNAVNEDPYGQSRGRGRGGGRGRGWG 180

Query: 181 RGGYGNYQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGS----GDNYQDNG 240
           RGGYGNYQGGYGNYQGGYG+YQGGYG+YQGG G+ YQGGSG GYQGG       NYQDNG
Sbjct: 181 RGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGYGH-YQGGSG-GYQGGGPGGYQGNYQDNG 240

Query: 241 GYSNWGRGGGRGRGWAYRGSGYDRGRGGRGYIRGRGR--MGGRTRGGGVGRNQ 286
           GYSNW RGGGRGRGW YRG+GYDRGRGGRGY RGRGR  + G+TR  G  RNQ
Sbjct: 241 GYSNWSRGGGRGRGWTYRGTGYDRGRGGRGYGRGRGRGQIDGQTRDNGGSRNQ 288

BLAST of Carg08910 vs. TAIR 10
Match: AT3G07030.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 202.2 bits (513), Expect = 5.5e-52
Identity = 186/414 (44.93%), Postives = 214/414 (51.69%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MDRYQ+V KPKPESPINENEIRITS+G IRNYI+YA++LLQ+K V++IVLKAMGQAISK 
Sbjct: 1   MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           VAI+EILK + P LHQ+ +ISS+SITDVWEP EEGL PVE+TRHVSMISITLS  ELNK+
Sbjct: 61  VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINE-------------------- 180
           +PGYQAP   +Q K QY      Q QQ RQ+R  YNA  E                    
Sbjct: 121 SPGYQAPAQSDQSKPQY------QPQQGRQARLPYNAYGEEGEVVAEGEAGEEVDMETTK 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 GVMKEKTKGTIKKIIKTMKVGIQTRAEAVDVVDEAMAIVGGRGGYGGGRDGGYGGGRDDG 240

Query: 241 ------DPYGQSR----------GRGRGRGRGWGRG---GYGNYQGGY-----GNYQGGY 287
                 D YG+ R          G G GR  G+G G   GYG  +GG+     G    GY
Sbjct: 241 YGERRNDGYGERRNDRYGGGRDDGYGGGRDDGYGGGRNDGYGGRRGGFRGGRGGGRDEGY 300

BLAST of Carg08910 vs. TAIR 10
Match: AT1G76010.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-40
Identity = 154/334 (46.11%), Postives = 184/334 (55.09%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MD+YQ+V KPK ++PI+ NEIRITSQG  RNYITYA TLLQDK   E+V KAMG+AI+K 
Sbjct: 1   MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           V I E++K+R P LHQ TSI S  ITD WEP EEGL+P+E TRHVSMI+ITLS  ELN +
Sbjct: 61  VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQP------------------RQSRPYYNAINED- 180
           + GYQ P  +E  K   ++  + ++  P                   +   Y N  +ED 
Sbjct: 121 SVGYQCPIPIELVKPMGDIDYEGREGSPGGRGRGRGRGRGRGRGRGGRGNAYVNVEHEDG 180

Query: 181 ------PYGQSRGRGRGR-GRGWGRGGYGN--------YQGGYG----------NYQGGY 240
                  YG+ RGRGRGR  RG GRGGY            GGYG          + +GGY
Sbjct: 181 GWEREQSYGRGRGRGRGRSSRGRGRGGYNGPPNEYDAPQDGGYGYDAPHEHRGYDDRGGY 240

Query: 241 GNYQGGYGNYQGGSG-NGYQGGSG-NGY------QGGSGDNYQDNGGYSNWGRGGGRGRG 283
                G G Y G  G  GY G  G  GY      +GG     Q  GGY    +G G   G
Sbjct: 241 DAPPQGRGGYDGPQGRGGYDGPQGRRGYDGPPQGRGGYDGPSQGRGGYDGPSQGRGGYDG 300

BLAST of Carg08910 vs. TAIR 10
Match: AT1G20220.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-37
Identity = 147/326 (45.09%), Postives = 176/326 (53.99%), Query Frame = 0

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60
           MD+YQ+VEKPK ++PI ENEIRITS G  RNYITYA  LLQ+ +  E++ KAMG+AI+K 
Sbjct: 1   MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query: 61  VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLSNRELNKN 120
           V I E++K+R P LHQ TSI S  ITD WEP EEGL  +E TRHVSMI+ITLS  +LN +
Sbjct: 61  VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query: 121 APGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINEDPYGQSRGRGRGRGRGWGRG 180
           + GYQ P  +E  K    +  + Q   PR              G  RGRG GRGRG GRG
Sbjct: 121 SVGYQCPIPIEMVKPLAEIDYEGQDGSPRGR------------GGRRGRG-GRGRGRGRG 180

Query: 181 GYGN------YQGGYGNYQGGYGNYQGGYGNYQGGSGNGYQGGSGNGYQGGSGDNYQDNG 240
           G GN      Y  G G  +GG GN   GY N +   G   +GG G+GY     + Y D G
Sbjct: 181 GRGNGPANVEYDDG-GRGRGGRGN---GYVNNEYDDGGRGRGGRGSGY---VNNEYNDGG 240

Query: 241 GYS--NWGRGGGRGRGWAYRGSGYDRGRGG------------------------------ 283
                ++GRG GRGRG    G    RGRGG                              
Sbjct: 241 MEQDRSYGRGRGRGRG----GGRGGRGRGGYNGPPPPYYEAQQDGGDYGYNNVAPPADHG 300

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7036262.12.4e-145100.00Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. a... [more]
XP_022930955.11.7e-14399.30glycine-rich RNA-binding protein 10-like [Cucurbita moschata][more]
XP_022995596.19.6e-13997.55protein FAM98A-like [Cucurbita maxima][more]
KAG6606323.12.1e-13896.85Ribonuclease P protein subunit p25-like protein, partial [Cucurbita argyrosperma... [more]
XP_023533405.13.6e-13896.25keratin, type I cytoskeletal 9-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EY768.2e-14499.30glycine-rich RNA-binding protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1K2C94.6e-13997.55protein FAM98A-like OS=Cucurbita maxima OX=3661 GN=LOC111491085 PE=4 SV=1[more]
A0A6J1E0112.4e-12789.76protein FAM98A-like OS=Momordica charantia OX=3673 GN=LOC111026164 PE=4 SV=1[more]
A0A6J1E3H23.2e-11684.88ribonuclease P protein subunit p25-like protein OS=Momordica charantia OX=3673 G... [more]
A0A6J1HFQ04.2e-11685.67protein FAM98A isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111463892 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G07030.15.5e-5244.93Alba DNA/RNA-binding protein [more]
AT1G76010.11.7e-4046.11Alba DNA/RNA-binding protein [more]
AT1G20220.11.0e-3745.09Alba DNA/RNA-binding protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 19..82
e-value: 1.1E-16
score: 60.4
IPR036882Alba-like domain superfamilyGENE3D3.30.110.20coord: 14..117
e-value: 8.7E-33
score: 114.2
IPR036882Alba-like domain superfamilySUPERFAMILY82704AlbA-likecoord: 16..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..154
NoneNo IPR availablePANTHERPTHR13516RIBONUCLEASE P SUBUNIT P25coord: 1..279
NoneNo IPR availablePANTHERPTHR13516:SF3ALBA DNA/RNA-BINDING PROTEINcoord: 1..279

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08910-RACarg08910-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding