Carg08878 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08878
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 9267994 .. 9268627 (+)
RNA-Seq ExpressionCarg08878
SyntenyCarg08878
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAGAGAGAGAAATCGAAGGAAGAGGGAACTATAAATTGGAGTCGACTACGAAGTTGGAGTTTCGCTGTGGCGGCGTGGGGTCCTCTCTACTTTCAAATTCTCCAAATTTCCCAATTCTCCCTCTCCAATTTCCTCCGTGTTCCACCGCTCGCTCCAGGTTTCGTTCTTCACATCTCTAATTTCCTCAATTTTTTGTTCCTGTTCTTTGATTTTGGTTTCATTTTCTGCGTTTCGTTCGATATAGGAACATTCTAATGCTGCCTTTCTTCCTATTTCTCCTTCCCATTGACAGGTATGTCTTTTCTGGAACTGAAATGGAGTGATAGTTCGTTCTCATTGTAACGATGTGTGATCTCTTTCTTGTTTCGGAATTGAGAAATTAAGGATATGTTCTCTACCTCCATTGAGTGCGTAGTTTGTATGTAGGCTTAGATTCGTACGTTTCTCGTCTCTCAGTGGTAAATTTGTTGAGAAGTATCGAAGATAAATGAAAGATGATGGAGAATTGTACTAGGGAATGTTTGCCTTTAACTTGCTTATATGGCTGCATTTAAGGAAAATTGTCTAACGATTGATGATTTCAGTTGCTCCTTTCGCAGCCTTTAGCTCTGTGGCGTATGCTCGCGGGTAA

mRNA sequence

AACAAGAGAGAGAAATCGAAGGAAGAGGGAACTATAAATTGGAGTCGACTACGAAGTTGGAGTTTCGCTGTGGCGGCGTGGGGTCCTCTCTACTTTCAAATTCTCCAAATTTCCCAATTCTCCCTCTCCAATTTCCTCCGTGTTCCACCGCTCGCTCCAGTTGCTCCTTTCGCAGCCTTTAGCTCTGTGGCGTATGCTCGCGGGTAA

Coding sequence (CDS)

AACAAGAGAGAGAAATCGAAGGAAGAGGGAACTATAAATTGGAGTCGACTACGAAGTTGGAGTTTCGCTGTGGCGGCGTGGGGTCCTCTCTACTTTCAAATTCTCCAAATTTCCCAATTCTCCCTCTCCAATTTCCTCCGTGTTCCACCGCTCGCTCCAGTTGCTCCTTTCGCAGCCTTTAGCTCTGTGGCGTATGCTCGCGGGTAA

Protein sequence

NKREKSKEEGTINWSRLRSWSFAVAAWGPLYFQILQISQFSLSNFLRVPPLAPVAPFAAFSSVAYARG
Homology
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BLAST of Carg08878 vs. NCBI nr
Match: KAG7036231.1 (hypothetical protein SDJN02_03033, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 5.6e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  NKREKSKEEGTINWSRLRSWSFAVAAWGPLYFQILQISQFSLSNFLRVPPLAPVAPFAAF 60
          NKREKSKEEGTINWSRLRSWSFAVAAWGPLYFQILQISQFSLSNFLRVPPLAPVAPFAAF
Sbjct: 1  NKREKSKEEGTINWSRLRSWSFAVAAWGPLYFQILQISQFSLSNFLRVPPLAPVAPFAAF 60

Query: 61 SSVAYARG 69
          SSVAYARG
Sbjct: 61 SSVAYARG 68

The following BLAST results are available for this feature:
BLAST of Carg08878 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036231.15.6e-29100.00hypothetical protein SDJN02_03033, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg08878 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08878 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08878 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08878-RACarg08878-RAmRNA