Carg08874 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08874
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 9251495 .. 9253337 (-)
RNA-Seq ExpressionCarg08874
SyntenyCarg08874
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGATCAATAGTGACTTGAGAAAAAAAGAAAAAGAAAAAGAAAAGAGATCAATAGTGACTTCAGAAAAAGGAAAAGGTGGGTCTGGAATTCAAGGGCAGGGTCTAGATACATCGCTGTCGTCTGTCCATGTTTCGGGAGCAATACATTCAGGTATTTCACTGTATCAGTAAGCTTAACCAAGCCGAGATCCATGCTTTATTCTAGGCATTTTCCTCAGGGCATTCAGGTGGTTCCATTTCAATTGTACTTGCAGCTTGAAATTCCCAGTAAAATGTTAGGCCTTCATTCATACGTACTTACCCTAGGAAAGGTAGAAAGGAAATTAACCACCCCACAGTTGATTAGTGGGAAGGGGAATGTCGTACTTGTATGTGGGAGTGTGTGTGCTTATTATTGCTGGAAGGAGAGTAGGGGAGGACACGTCTTCTGTGTATGGAACAATAGTCTCTTGGGAGAGTTCACTAGCCCCCTAAAATAGACTGGGAGTATTCTTTTTTTGCAAGTTCTTGTGTTGTCTTGTTATTTTGAAAGTTTAATCAAAGGAAAGTAAGGACGTTCCCTTATATAGAAGTGATTGAAACACTTATGTGATCGAGGACCTCAATAGGAAAATTTTACCAAGTCCTAAACTAGTTTCAGAAAATGATGATTTTGAGAGTCCCCAAACTCAACCTTGAACCTTACCTTCCCGCATCAGTTCATGCTCTTTCTCTGTATTTATTATCCCTTAACACAGATCTCTAATTCTAATGAAGATAGAGTTCACCTTATGATTATCCCATTCCCTCTCTCTGAACCAACTTCCAGCGCTCTTCGTTTTCATACTCGAGACCTTGCAGTGCCTTTTGTTTCTGTCCTCTTTCTCTTCTAGCATAAGTAAATGTAATCATGTCTCACTCTGGAATTGGTATACTGGCGTATTCTTTTTATTGTTTTTGTTCTTACTTTGAAGTTTCAATTAAAAAAAACTCACAATTACCAGCCTTACACTTCTAGCATTGACCGACTTTCTTGGATAATTACTTTCTTTGATGGTGCCTTTGGCTTTGCCATTCAGTATTCTATGTTCTTAGTCTGAAGATGTTCAATGAAAAGAACTCGCAAATTACCTGCCTTGTACATCTTGGTTCATGCTAATTACTTTCTTGGTTCGTTCCTCTGGCTTTGTCCATCAATATTATATGCTAGTGTACTAAAATGACACACCTTAATAGAAGGACAATCGTTCTATGTAATCTCTGCATCTTATTCATTTTCTATGTACTTAATCTTATTCCTTTTCTTCAATCACTACCTGGATATACTTATTTGTAGTCTCTGTATAATTGTGCAATACTGTAATGCAGCTCTTCCCATCAACATATATTTCCTTAAATACATAAATTGCAATTTCTTCATGTTATTCTGAAGTTCTTTGCTCTTTCCATAATGACTTAATGCTACAGAATAGTTGTAACTCGTGAAAGCTGTCTCCCTTGCAGGTTCAAAAGGTTAACATCTTGAGCACTGAGCTATTGCTATACTGATTTGCTGTACATAGCTAGCTTCAGTTACCTAAAGTGAGAGTGAGTAAATATTCAGCATTTTATTTTTACCCGTTATGCTCCTCTTCTTTCTTGGCTTCTGCTGGTAACTGTTTAGGCATAGTTCTTTCTACTCTTTTTTGCTCTTAATAAAGTATTTTAGGGTCTACTTTCAGTCAGATTTAGAGTGTAAGCAGCTCCATTTAGACGTCGTGGTTCGACTCGATTTGATCTGTTTTGTCTTTCCTTTTACTCTTTTTTTTTCTCTTAATAAAGTATTTAGGGTCTAATTTCAGTCAGATTTGGAGTGTAA

mRNA sequence

ATGATCAAGATCAATAGTGACTTGAGAAAAAAAGAAAAAGAAAAAGAAAAGAGATCAATAGTGACTTCAGAAAAAGGAAAAGGTGGGTCTGGAATTCAAGGGCAGGGTCTAGATACATCGCTGTCGTCTGTCCATGTTTCGGGAGCAATACATTCAGTAAGCTTAACCAAGCCGAGATCCATGCTTTATTCTAGGCATTTTCCTCAGGGCATTCAGGTGGTTCCATTTCAATTGTACTTGCAGCTTGAAATTCCCAGTAAAATGGTCTACTTTCAGTCAGATTTAGAGTGTAAGCAGCTCCATTTAGACGTCGTGGGTCTAATTTCAGTCAGATTTGGAGTGTAA

Coding sequence (CDS)

ATGATCAAGATCAATAGTGACTTGAGAAAAAAAGAAAAAGAAAAAGAAAAGAGATCAATAGTGACTTCAGAAAAAGGAAAAGGTGGGTCTGGAATTCAAGGGCAGGGTCTAGATACATCGCTGTCGTCTGTCCATGTTTCGGGAGCAATACATTCAGTAAGCTTAACCAAGCCGAGATCCATGCTTTATTCTAGGCATTTTCCTCAGGGCATTCAGGTGGTTCCATTTCAATTGTACTTGCAGCTTGAAATTCCCAGTAAAATGGTCTACTTTCAGTCAGATTTAGAGTGTAAGCAGCTCCATTTAGACGTCGTGGGTCTAATTTCAGTCAGATTTGGAGTGTAA

Protein sequence

MIKINSDLRKKEKEKEKRSIVTSEKGKGGSGIQGQGLDTSLSSVHVSGAIHSVSLTKPRSMLYSRHFPQGIQVVPFQLYLQLEIPSKMVYFQSDLECKQLHLDVVGLISVRFGV
Homology
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BLAST of Carg08874 vs. NCBI nr
Match: KAG7036227.1 (hypothetical protein SDJN02_03029, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.4 bits (555), Expect = 3.2e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MIKINSDLRKKEKEKEKRSIVTSEKGKGGSGIQGQGLDTSLSSVHVSGAIHSVSLTKPRS 60
           MIKINSDLRKKEKEKEKRSIVTSEKGKGGSGIQGQGLDTSLSSVHVSGAIHSVSLTKPRS
Sbjct: 1   MIKINSDLRKKEKEKEKRSIVTSEKGKGGSGIQGQGLDTSLSSVHVSGAIHSVSLTKPRS 60

Query: 61  MLYSRHFPQGIQVVPFQLYLQLEIPSKMVYFQSDLECKQLHLDVVGLISVRFGV 115
           MLYSRHFPQGIQVVPFQLYLQLEIPSKMVYFQSDLECKQLHLDVVGLISVRFGV
Sbjct: 61  MLYSRHFPQGIQVVPFQLYLQLEIPSKMVYFQSDLECKQLHLDVVGLISVRFGV 114

The following BLAST results are available for this feature:
BLAST of Carg08874 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036227.13.2e-53100.00hypothetical protein SDJN02_03029, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg08874 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08874 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08874 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08874-RACarg08874-RAmRNA