Carg08856 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08856
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLysine-specific demethylase JMJ706-like protein
LocationCarg_Chr02: 9129074 .. 9133401 (+)
RNA-Seq ExpressionCarg08856
SyntenyCarg08856
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAACCTCACAACTAAAAAATCACATATTACGCTTCTCTTTTTTACTCCCGATCCTTCCCGCCAGAAACTCGCCTTTCCCGCCGGGAAACCGCTTCAACCTCCGGGTACGTATTCGTCTCTTCCGAATACCGCTTATCATTCTCATTTTCCATACTCTTTTTGCTCTGATTGATTTAAGAATGGCTTTCGATCTCCAAGTAACTAGTCTGAGAATTCGGTTTTGTATCGTTTGTGATCAGCCTGCTGCTCGTCGAAGGCTTGGTTCTGTGTGTTCGTGATCATGACTATGACCTGAGTTTATTTTTCCGGATTTTGGATTTCCTTCGTGGTTCTGCTATTTTTCGGCGAAGTGATCACATACGGAGGCGTGTACGGAGTGATTTCGGCATGAGATGGTACTGATTCCGACTCTTTGTTTTTTTTGCTCGGAGTATGAACTTTCTTGTAGCCACACAAGATTGTTATTCGCTTCTTTTCAAGCTGATCGCTCTCTTTCCTCATGTTCGCTGAGATCTTGTACATTGTTTGGTTTCAGAAAAGTATCAGAAACGACAAACAATTTTTGTTTGCGTTTTTCACTAAAAAATTCTTGCCTCTTTTATGCAGCTTTCTGACTCGCAGAAAGTCTAAAGAGGAAATGGTTGAGTGGATGAACTTCTCTCTGGCTCGAAACTTTAGAAACTCTTTGTTTTTATCCATCTATTAATCTAATTTTGAATTTAATTTTCAGTTGTGTTTTTCCTCTAAAACTAGGACGCTGGACTTCCGTTTGAACTGTGAAGAATTTAATTGTATTTTAAAACAGATTTATCATAATATTATGTTGAGGTCGAACGCTTGAATTTTAGCAATATCTTATTGAACTGTTGTTTTCATTTTTATAATTCTGTCTCGTGCGGTACAAGTTCAGGTGCACTTACTGGTGAACATTAGCATGTTGGTTTGCCTCTGCTCTGTCTGTGTTCCGTGATAAGAATTGTAACTGACGTGCCTGAGTTTAGCTGATATAGTTTTAGATGAAGCTCGTGAATCTGTTCGATGGAGTGTTTTTTTATCCAACTTGATCAAGTGAAATAGGTAATAACTGCAATTCTACAAGCCTTGTTCCTCAATAGCTTCTCAAGTTCAAATATCTTGTACAAAATCAAAACTGAAATTTAGTCCTTAGCTAGTTGTACAGCCACATTTGCTATTTCATCCTGATTATAGTGTTGACGGGTGGAAGGACGAATCTACATTTCCAGAGAGTCTAAAAATAGCATAGAGTTTCTTTAACGAAAAAGGATTCAGCGAATGAAATCCGAAGCTGTTGCTGGGACAGTTACCGTAACAAATATGTTGATCAGAAGTGACGGACGGAGATGCTTTAAGAGCTTCGATATCTCGTGGCAAGAAATTTCACGACGATATGGATTCATTTTCCTGGCCAAATGGTCCTTCTTATAGGAATAAAGACTTTTCGAAGAGAAAAATTGATAAGTTTCACTGCAGTGATCTAGAATGGACTGATGAGATTCCAGAATGTCCCGTGTATCATCCCTCAGAAGGGGAATTTGAGGATCCTCTGGTTTATTTGCAGAAGATTGCTCCGGGAGCCTCCAGATATGGTCAGGTACCCTATTTTTTTCTATGCAAATCATAATTCCATGCCATATCTTAATTTTTTTTATGGATCTGAGAGCTTTAAATGATAATATTCTAGTTAGGCATCGCAATCCAGATATGGTCAGACACCCTATTTTTTCTATTCAAATCGTTATTCCAAGCCATATCTTAATTTTTTATGGATGTGAGAACTTTAAATAACAATGAGTGCTAGCTAGGCTTGAAATTTGGGATGTGAGAGCTTTAAAACATCAAGTTGTGTTCACTCGCATACTGCTTTGAAATTTGGGATATGCGGTACTAGTGGTGGAATAGAATTTGGTTTTGGTTATTTTGTGATGTTTAAAAACATTACCTATTATTTATATTCATTCATCATTATTATTATTTTTGTTTAAACAAACGCTTCTCTATGAAGATTACGGACTTCGCTGAAAATTTTGAAGTCAAGACTGATCACTTTAAATGTTTGAATATGTAATTATCGTTTTCAATTCCTCAATACGTTTGATCACTGCCCTTCTCATTATCACTTGGCTTGGTTTGTCAGTCAGTGATCGTTCTATGTATTTTGTTATATTGCTATTACACAGCACAACACACTTGGACATTGTGTATAAACGTAATGTATCATATGCCTGTTGACCTAAGACCACTTATCGTATTAAATTATATTGATTTCGTTAATGCATAATATAGATGGCCATTTGCATTGTTAAATAAACATTGTGGATTAATTGTTGATAGCTGTGAGCCTGTGACTACTTGTGATTGTGTGGGATGAGTCACTTTGTTTTTAGTTTTCTTTCTTGGTTGAGTTATAGACTTGGCTTTCTTTTGTAGGGATTTTCTCTTAGCTCTTCTATCTCTTCTGTAAGTTTTCGAAGACTTTCATCATTCCCGCTGAAATATTTTCATGACTTTTATACTTCCACAGACCTTTTCCCTTATTCACATAATCAAGGTTTCGCCCGTTGTTAATCATTTAATGGATTTGTTAGGTACAGAGGCGTTCCAACCATTTTAGTGCTCCCATTTTTAAAAACATTTAGTCTGAACATTATCAAAATGTGTCCTTAAATTATCGTTAGCATTTCTGGATAAGCTGAGCTTCATACAGGTTGATCTAATGAGACATGATACTCCGAAAGTTGCAATGCTTTAGTTTCTTACATGACTTGGGTTGGATCCTTCAAGGAATTACTGAGCCAATGCTATATATTGGAATGCTGTTTAGTATATTTGCCTGGCGCATGTGGAGGATGGTTTCCTGTATAGGTACGTTACCAAAATAGTCAAGATTTTCAGTAATCAGTACTACCCCTGGGATGATTAATTATTTTCATTGTTTCTTTATGGTTCCTTTGTGGAGCATCAAAAACTTGGTATTGTATTCCAGATGATGCGGCTTTGAGATTTGAGAACGTTGTCAAAGAAAATGTGTACAGAGAGGATATTCTGTCAGCAAATGGTGAGTATGGAGCTTTTGATGTTCTATCGGGAAAAACTGCATTGTTTCCTCCAAATATTCTGCTAAAGAGTATACCATGCTAGCTTTAGTCATGGTGAGTCATCCTAATCATTATCCTGTATTTTTTTCCTTGCACCTTATCCAATTATCAACATTTTTTCTTAGTTTGTAACGGGCAGTCTTTTCTTTTTCCTCTTCAAATCTATAGGCTTCAATTGTGGTGAAGCTGTGAACTTCGCCATTAGCTATTGGTTTCCTTTGGGTACTCTGGCTAGCCAGTGCATGCCCTTCTTAATTGAGTTCCTCTACTCACTCGCGAAGAACTTTTGTGTAATGAAGCAATGCTTCTACACACAAATTTAGAACTTGAAGATTCAGTTCATTCATTCGTGGATCAGTCTATCACCATTCCCTCAAGCTATCTCTTATGAGTCCGATTCGCTTCCACAATTGTGCTCGGTAGTTACTCATGAAATCCAGGGTGTGAACGGGGATTTCTCCAAGGTCCCATGGCACTATCCTCTGCAGTGTATGCATATGTCTGTTGCAGCTGTTATGGATATCATGTGTGCCTTTGCCATGGTATACTTCCTCGTTTTCTGCTTGAGAAATATGCTTGACATCCTATCAAAAAATGACTAAAATAAATTGAAATGTTACACATATGTTTGACATTTTGTTTAAAAATGATCGACCTCATTTTTTTTTTTTCTGAATGATGTATGTTTATATTGGGTCGTTGACTCTTTTGGCGTACAAAACTGACAAAGAGGAACGTATCACTTCGAAACTTTCATGTCTATCTATTAATTATCATCTTGAGGCTGTTGACTACAGCCTACAATGAAGTATATATATATATATAGGCAGGATTTTGACGAGTGGCGCCGCTGAAATATGTAGAACTGAAATGTCTGAGACTTCACGACGTCCAAAGCCAAACATTGTAAGATTTTGCTGTTTTCTTGAGATCTGGTTTTCGTTTCGTTTACAAAATTATTGACATTTCTTGAAAAAGAAAAAAAAAGGATTGGAGGAAGGCCCACATTTTGATTTAACTGAAGTCTCATCTGTTGCTTCCTTCCAAGCAGATACAGAAGCATGCTTATAATGAATTTGGAAATCATGAAACCCCCAGTGTTTCTCAAGTGTCGTGTTATACATGCGAGCCTTTTCCTTCCCTTCAACCAGGGGAGAACTGTTCAAGATCAGCTATTCGACCTCCTGGGGACCATAATGATGATGATTAG

mRNA sequence

CAAAACCTCACAACTAAAAAATCACATATTACGCTTCTCTTTTTTACTCCCGATCCTTCCCGCCAGAAACTCGCCTTTCCCGCCGGGAAACCGCTTCAACCTCCGGCCTGCTGCTCGTCGAAGGCTTGGTTCTGTGTGTTCGTGATCATGACTATGACCTGAGTTTATTTTTCCGGATTTTGGATTTCCTTCGTGGTTCTGCTATTTTTCGGCGAAGTGATCACATACGGAGGCGTGTACGGAGTGATTTCGGCATGAGATGGACGCTGGACTTCCGTTTGAACTGTGAAGAATTTAATTAAGTGACGGACGGAGATGCTTTAAGAGCTTCGATATCTCGTGGCAAGAAATTTCACGACGATATGGATTCATTTTCCTGGCCAAATGGTCCTTCTTATAGGAATAAAGACTTTTCGAAGAGAAAAATTGATAAGTTTCACTGCAGTGATCTAGAATGGACTGATGAGATTCCAGAATGTCCCGTGTATCATCCCTCAGAAGGGGAATTTGAGGATCCTCTGGTTTATTTGCAGAAGATTGCTCCGGGAGCCTCCAGATATGGTCAGTTGCAATGCTTTAGTTTCTTACATGACTTGGGTTGGATCCTTCAAGGAATTACTGAGCCAATGCTATATATTGGAATGCTGTTTAGTATATTTGCCTGGCGCATGTGGAGGATGGTTTCCTGTATAGATGATGCGGCTTTGAGATTTGAGAACGTTGTCAAAGAAAATGTGTACAGAGAGGATATTCTGTCAGCAAATGGCTTCAATTGTGGTGAAGCTGTGAACTTCGCCATTAGCTATTGGTTTCCTTTGGGTACTCTGGCTAGCCAGTGCATGCCCTTCTTAATTGAGTTCCTCTACTCACTCGCGAAGAACTTTTGTGGTGTGAACGGGGATTTCTCCAAGGTCCCATGGCACTATCCTCTGCAGTGTATGCATATGTCTGTTGCAGCTGTTATGGATATCATGTGTGCCTTTGCCATGATACAGAAGCATGCTTATAATGAATTTGGAAATCATGAAACCCCCAGTGTTTCTCAAGTGTCGTGTTATACATGCGAGCCTTTTCCTTCCCTTCAACCAGGGGAGAACTGTTCAAGATCAGCTATTCGACCTCCTGGGGACCATAATGATGATGATTAG

Coding sequence (CDS)

ATGGATTCATTTTCCTGGCCAAATGGTCCTTCTTATAGGAATAAAGACTTTTCGAAGAGAAAAATTGATAAGTTTCACTGCAGTGATCTAGAATGGACTGATGAGATTCCAGAATGTCCCGTGTATCATCCCTCAGAAGGGGAATTTGAGGATCCTCTGGTTTATTTGCAGAAGATTGCTCCGGGAGCCTCCAGATATGGTCAGTTGCAATGCTTTAGTTTCTTACATGACTTGGGTTGGATCCTTCAAGGAATTACTGAGCCAATGCTATATATTGGAATGCTGTTTAGTATATTTGCCTGGCGCATGTGGAGGATGGTTTCCTGTATAGATGATGCGGCTTTGAGATTTGAGAACGTTGTCAAAGAAAATGTGTACAGAGAGGATATTCTGTCAGCAAATGGCTTCAATTGTGGTGAAGCTGTGAACTTCGCCATTAGCTATTGGTTTCCTTTGGGTACTCTGGCTAGCCAGTGCATGCCCTTCTTAATTGAGTTCCTCTACTCACTCGCGAAGAACTTTTGTGGTGTGAACGGGGATTTCTCCAAGGTCCCATGGCACTATCCTCTGCAGTGTATGCATATGTCTGTTGCAGCTGTTATGGATATCATGTGTGCCTTTGCCATGATACAGAAGCATGCTTATAATGAATTTGGAAATCATGAAACCCCCAGTGTTTCTCAAGTGTCGTGTTATACATGCGAGCCTTTTCCTTCCCTTCAACCAGGGGAGAACTGTTCAAGATCAGCTATTCGACCTCCTGGGGACCATAATGATGATGATTAG

Protein sequence

MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIAPGASRYGQLQCFSFLHDLGWILQGITEPMLYIGMLFSIFAWRMWRMVSCIDDAALRFENVVKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLIEFLYSLAKNFCGVNGDFSKVPWHYPLQCMHMSVAAVMDIMCAFAMIQKHAYNEFGNHETPSVSQVSCYTCEPFPSLQPGENCSRSAIRPPGDHNDDD
Homology
BLAST of Carg08856 vs. NCBI nr
Match: KAG7036210.1 (Lysine-specific demethylase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 566.6 bits (1459), Expect = 1.1e-157
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0

Query: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60
           MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA
Sbjct: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60

Query: 61  PGASRYGQLQCFSFLHDLGWILQGITEPMLYIGMLFSIFAWRMWRMVSCIDDAALRFENV 120
           PGASRYGQLQCFSFLHDLGWILQGITEPMLYIGMLFSIFAWRMWRMVSCIDDAALRFENV
Sbjct: 61  PGASRYGQLQCFSFLHDLGWILQGITEPMLYIGMLFSIFAWRMWRMVSCIDDAALRFENV 120

Query: 121 VKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLIEFLYSLAKNFCGVNGD 180
           VKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLIEFLYSLAKNFCGVNGD
Sbjct: 121 VKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLIEFLYSLAKNFCGVNGD 180

Query: 181 FSKVPWHYPLQCMHMSVAAVMDIMCAFAMIQKHAYNEFGNHETPSVSQVSCYTCEPFPSL 240
           FSKVPWHYPLQCMHMSVAAVMDIMCAFAMIQKHAYNEFGNHETPSVSQVSCYTCEPFPSL
Sbjct: 181 FSKVPWHYPLQCMHMSVAAVMDIMCAFAMIQKHAYNEFGNHETPSVSQVSCYTCEPFPSL 240

Query: 241 QPGENCSRSAIRPPGDHNDDD 262
           QPGENCSRSAIRPPGDHNDDD
Sbjct: 241 QPGENCSRSAIRPPGDHNDDD 261

BLAST of Carg08856 vs. NCBI nr
Match: KAG6606271.1 (Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 467.6 bits (1202), Expect = 6.9e-128
Identity = 238/306 (77.78%), Postives = 243/306 (79.41%), Query Frame = 0

Query: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60
           MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA
Sbjct: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60

Query: 61  PGASRYGQLQCFSFLHDLG--------WILQGITEPMLYIGMLFSIFAWRMWRMVSCIDD 120
           PGASRYG  Q FS +H +           L GITEPMLYIGMLFSIFAWRMWRMVSCIDD
Sbjct: 61  PGASRYG--QTFSLIHIIKVSPVVNHLMDLLGITEPMLYIGMLFSIFAWRMWRMVSCIDD 120

Query: 121 AALRFENVVKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLIEF------ 180
           AALRFENVVKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLI+       
Sbjct: 121 AALRFENVVKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLIDLSPFPQA 180

Query: 181 ----------LYSLAKN-FCGVNGDFSKVPWHYPLQCMHMSVAAVMDIM---------CA 240
                     L S+  +   GVNGDFSKVPWHYPLQCMHMSVAAVMDIM         C 
Sbjct: 181 ISYESDSLPQLCSVVTHEIQGVNGDFSKVPWHYPLQCMHMSVAAVMDIMILTSGAAEICR 240

Query: 241 FAM-----------IQKHAYNEFGNHETPSVSQVSCYTCEPFPSLQPGENCSRSAIRPPG 262
             M           IQKHAYNEFGNHETPSVSQVSCYTCEPFPSLQPGENCSRSAIRPPG
Sbjct: 241 TEMSETSRRPKPNIIQKHAYNEFGNHETPSVSQVSCYTCEPFPSLQPGENCSRSAIRPPG 300

BLAST of Carg08856 vs. NCBI nr
Match: KAG6571642.1 (Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-38
Identity = 176/638 (27.59%), Postives = 204/638 (31.97%), Query Frame = 0

Query: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60
           +DSFSW NGPS  N DFSKR + KFHCSDLEW ++IPECPVYHPS+ EFEDPLVYLQKIA
Sbjct: 7   VDSFSWKNGPSIGNDDFSKRGVGKFHCSDLEWINKIPECPVYHPSKEEFEDPLVYLQKIA 66

Query: 61  PGASRYGQLQCFS----------------------------------------------- 120
           P AS YG  +  S                                               
Sbjct: 67  PDASSYGMCKIVSPFSASIPAGMVLMKEKVGFKFTTRVQPLRLAEWDADDRMTFYMSGRN 126

Query: 121 --------------------------------FLHD------------------------ 180
                                           F H+                        
Sbjct: 127 YTFREFEKMANKVFERRYCSSGYLPAKYLEKEFWHEIIGGKTDTVEYACDIDGTAFSSSP 186

Query: 181 -------------LGWI-----------LQGITEPMLYIGMLFSIFAWRM---------- 240
                        L W+           + G+TEPMLYIGMLFSIFAW +          
Sbjct: 187 NDELGKSKWNLKKLSWLPKSVLRHLEMEIPGVTEPMLYIGMLFSIFAWHVEDHFLYSINY 246

Query: 241 -----WRMVSCI-DDAALRFENVVKENVYREDILSAN----------------------- 262
                 +   CI  DAALRFE VV+ENVY++DILSAN                       
Sbjct: 247 HHCGASKTWYCIPGDAALRFEGVVRENVYKDDILSANSEDGAFDILSGKTTLFPPNILLE 306

BLAST of Carg08856 vs. NCBI nr
Match: XP_022963867.1 (lysine-specific demethylase JMJ706-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-38
Identity = 176/638 (27.59%), Postives = 204/638 (31.97%), Query Frame = 0

Query: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60
           +DSFSW NGPS  N DFSKR + KFHCSDLEW ++IPECPVYHPS+ EFEDPLVYLQKIA
Sbjct: 24  VDSFSWKNGPSIGNDDFSKRGVGKFHCSDLEWINKIPECPVYHPSKEEFEDPLVYLQKIA 83

Query: 61  PGASRYGQLQCFS----------------------------------------------- 120
           P AS YG  +  S                                               
Sbjct: 84  PDASSYGMCKIVSPFSASIPAGMVLMKEKVGFKFTTRVQPLRLAEWDADDRMTFYMSGRN 143

Query: 121 --------------------------------FLHD------------------------ 180
                                           F H+                        
Sbjct: 144 YTFREFEKMANKVFERRYCSSGYLPAKYLEKEFWHEIIGGKTDTVEYACDIDGTAFSSSP 203

Query: 181 -------------LGWI-----------LQGITEPMLYIGMLFSIFAWRM---------- 240
                        L W+           + G+TEPMLYIGMLFSIFAW +          
Sbjct: 204 NDELGKSKWNLKKLSWLPKSVLRHLEMEIPGVTEPMLYIGMLFSIFAWHVEDHFLYSINY 263

Query: 241 -----WRMVSCI-DDAALRFENVVKENVYREDILSAN----------------------- 262
                 +   CI  DAALRFE VV+ENVY++DILSAN                       
Sbjct: 264 HHCGASKTWYCIPGDAALRFEGVVRENVYKDDILSANSEDGAFDILSGKTTLFPPNILLE 323

BLAST of Carg08856 vs. NCBI nr
Match: XP_022963862.1 (lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata] >XP_022963863.1 lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata] >XP_022963864.1 lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata] >XP_022963865.1 lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata] >XP_022963866.1 lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 169.1 bits (427), Expect = 5.1e-38
Identity = 176/639 (27.54%), Postives = 204/639 (31.92%), Query Frame = 0

Query: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60
           +DSFSW NGPS  N DFSKR + KFHCSDLEW ++IPECPVYHPS+ EFEDPLVYLQKIA
Sbjct: 24  VDSFSWKNGPSIGNDDFSKRGVGKFHCSDLEWINKIPECPVYHPSKEEFEDPLVYLQKIA 83

Query: 61  PGASRYGQLQCFS----------------------------------------------- 120
           P AS YG  +  S                                               
Sbjct: 84  PDASSYGMCKIVSPFSASIPAGMVLMKEKVGFKFTTRVQPLRLAEWDADDRMTFYMSGRN 143

Query: 121 --------------------------------FLHD------------------------ 180
                                           F H+                        
Sbjct: 144 YTFREFEKMANKVFERRYCSSGYLPAKYLEKEFWHEIIGGKTDTVEYACDIDGTAFSSSP 203

Query: 181 -------------LGWI-----------LQGITEPMLYIGMLFSIFAWRM---------- 240
                        L W+           + G+TEPMLYIGMLFSIFAW +          
Sbjct: 204 NDELGKSKWNLKKLSWLPKSVLRHLEMEIPGVTEPMLYIGMLFSIFAWHVEDHFLYSINY 263

Query: 241 -----WRMVSCI-DDAALRFENVVKENVYREDILSAN----------------------- 262
                 +   CI  DAALRFE VV+ENVY++DILSAN                       
Sbjct: 264 HHCGASKTWYCIPGDAALRFEGVVRENVYKDDILSANSEDGAFDILSGKTTLFPPNILLE 323

BLAST of Carg08856 vs. ExPASy Swiss-Prot
Match: Q336N8 (Lysine-specific demethylase JMJ706 OS=Oryza sativa subsp. japonica OX=39947 GN=JMJ706 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-17
Identity = 91/344 (26.45%), Postives = 117/344 (34.01%), Query Frame = 0

Query: 13  RNKD-FSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIAPGASRYG---- 72
           +NKD F+KR++DKF  S LEW D+I ECPVY+P++ EFEDP+ Y+QKIAP AS+YG    
Sbjct: 76  QNKDPFAKRRVDKFDMSSLEWIDKIEECPVYYPTKEEFEDPIGYIQKIAPVASKYGICKI 135

Query: 73  ----------------QLQCFSFL------------------------------------ 132
                           +   F F+                                    
Sbjct: 136 VSPVSASVPAGVVLMKEQPGFKFMTRVQPLRLAKWAEDDTVTFFMSERKYTFRDYEKMAN 195

Query: 133 -------------------------------------------------HD-LG---WIL 159
                                                            HD LG   W L
Sbjct: 196 KVFAKKYSSASCLPAKYVEEEFWREIAFGKMDFVEYACDVDGSAFSSSPHDQLGKSNWNL 255

BLAST of Carg08856 vs. ExPASy Swiss-Prot
Match: Q6BDA0 (Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana OX=3702 GN=ELF6 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.5e-04
Identity = 26/67 (38.81%), Postives = 34/67 (50.75%), Query Frame = 0

Query: 82  LQGITEPMLYIGMLFSIFAW------------------RMWRMVSCIDDAALRFENVVKE 131
           + G+T PM+YIGMLFS FAW                  + W  V C  D AL FE V+++
Sbjct: 285 IPGVTSPMVYIGMLFSWFAWHVEDHELHSMNYLHTGSPKTWYAVPC--DYALDFEEVIRK 344

BLAST of Carg08856 vs. ExPASy TrEMBL
Match: A0A6J1HGC9 (lysine-specific demethylase JMJ706-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464049 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38
Identity = 176/638 (27.59%), Postives = 204/638 (31.97%), Query Frame = 0

Query: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60
           +DSFSW NGPS  N DFSKR + KFHCSDLEW ++IPECPVYHPS+ EFEDPLVYLQKIA
Sbjct: 24  VDSFSWKNGPSIGNDDFSKRGVGKFHCSDLEWINKIPECPVYHPSKEEFEDPLVYLQKIA 83

Query: 61  PGASRYGQLQCFS----------------------------------------------- 120
           P AS YG  +  S                                               
Sbjct: 84  PDASSYGMCKIVSPFSASIPAGMVLMKEKVGFKFTTRVQPLRLAEWDADDRMTFYMSGRN 143

Query: 121 --------------------------------FLHD------------------------ 180
                                           F H+                        
Sbjct: 144 YTFREFEKMANKVFERRYCSSGYLPAKYLEKEFWHEIIGGKTDTVEYACDIDGTAFSSSP 203

Query: 181 -------------LGWI-----------LQGITEPMLYIGMLFSIFAWRM---------- 240
                        L W+           + G+TEPMLYIGMLFSIFAW +          
Sbjct: 204 NDELGKSKWNLKKLSWLPKSVLRHLEMEIPGVTEPMLYIGMLFSIFAWHVEDHFLYSINY 263

Query: 241 -----WRMVSCI-DDAALRFENVVKENVYREDILSAN----------------------- 262
                 +   CI  DAALRFE VV+ENVY++DILSAN                       
Sbjct: 264 HHCGASKTWYCIPGDAALRFEGVVRENVYKDDILSANSEDGAFDILSGKTTLFPPNILLE 323

BLAST of Carg08856 vs. ExPASy TrEMBL
Match: A0A6J1HJ55 (lysine-specific demethylase JMJ706-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464049 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-38
Identity = 176/639 (27.54%), Postives = 204/639 (31.92%), Query Frame = 0

Query: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60
           +DSFSW NGPS  N DFSKR + KFHCSDLEW ++IPECPVYHPS+ EFEDPLVYLQKIA
Sbjct: 24  VDSFSWKNGPSIGNDDFSKRGVGKFHCSDLEWINKIPECPVYHPSKEEFEDPLVYLQKIA 83

Query: 61  PGASRYGQLQCFS----------------------------------------------- 120
           P AS YG  +  S                                               
Sbjct: 84  PDASSYGMCKIVSPFSASIPAGMVLMKEKVGFKFTTRVQPLRLAEWDADDRMTFYMSGRN 143

Query: 121 --------------------------------FLHD------------------------ 180
                                           F H+                        
Sbjct: 144 YTFREFEKMANKVFERRYCSSGYLPAKYLEKEFWHEIIGGKTDTVEYACDIDGTAFSSSP 203

Query: 181 -------------LGWI-----------LQGITEPMLYIGMLFSIFAWRM---------- 240
                        L W+           + G+TEPMLYIGMLFSIFAW +          
Sbjct: 204 NDELGKSKWNLKKLSWLPKSVLRHLEMEIPGVTEPMLYIGMLFSIFAWHVEDHFLYSINY 263

Query: 241 -----WRMVSCI-DDAALRFENVVKENVYREDILSAN----------------------- 262
                 +   CI  DAALRFE VV+ENVY++DILSAN                       
Sbjct: 264 HHCGASKTWYCIPGDAALRFEGVVRENVYKDDILSANSEDGAFDILSGKTTLFPPNILLE 323

BLAST of Carg08856 vs. ExPASy TrEMBL
Match: A0A5D3E513 (Lysine-specific demethylase JMJ706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004710 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33
Identity = 113/325 (34.77%), Postives = 130/325 (40.00%), Query Frame = 0

Query: 2   DSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIAP 61
           DSF+  NGPS  N DFSK ++ KFHCSDLEW ++IPECPVYHPS+ EFEDPLVYLQ IAP
Sbjct: 25  DSFARSNGPSNGNNDFSKGEVVKFHCSDLEWINKIPECPVYHPSKEEFEDPLVYLQNIAP 84

Query: 62  GASRYGQLQ-----------------------------------------CFS------- 121
            ASRYG+ +                                         C S       
Sbjct: 85  EASRYGKSRVQPLRLAEWDTDDRMTFYKSGRNYTFRDFEKMANKVFERRYCSSGCLPAKY 144

Query: 122 ----FLHD-------------------------------------LGW-----------I 159
               F H+                                     L W           +
Sbjct: 145 LEKEFWHEIIGGKTDTVEYACDVDGTAFSSSPNDELGKSKWNLKKLSWSPKSVLRLLEMV 204

BLAST of Carg08856 vs. ExPASy TrEMBL
Match: B9RZ08 (Transcription factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1315610 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-31
Identity = 94/252 (37.30%), Postives = 119/252 (47.22%), Query Frame = 0

Query: 8   NGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIAPGASRYG 67
           N PS     F+KRK+DKF  SDLEWT++IPECPVYHP++ EFEDPLVYLQKIAP ASRY 
Sbjct: 71  NSPSRGKDAFAKRKVDKFDTSDLEWTEKIPECPVYHPTKEEFEDPLVYLQKIAPEASRYE 130

Query: 68  QLQ--------CFSF------------LHDLGWI-----------LQGITEPMLYIGMLF 127
            ++         FS             L ++ W+           + G+T+PMLYIGMLF
Sbjct: 131 TVEYACDVDGSAFSSSPSDPLGNSKWNLKNVSWLQKSVLRLLEKAIPGVTDPMLYIGMLF 190

Query: 128 SIFAW------------------RMWRMVSCIDDAALRFENVVKENVYREDILS------ 159
           S+FAW                  + W  +     AAL FE VV+++VY  DILS      
Sbjct: 191 SVFAWHVEDHYLYSINYHHCGAAKTWYGIP--GPAALEFEKVVQQHVYTHDILSTEGEDG 250

BLAST of Carg08856 vs. ExPASy TrEMBL
Match: A0A1S4E5H7 (LOW QUALITY PROTEIN: lysine-specific demethylase JMJ706-like OS=Cucumis melo OX=3656 GN=LOC103503570 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-31
Identity = 112/346 (32.37%), Postives = 128/346 (36.99%), Query Frame = 0

Query: 2   DSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIAP 61
           DSF+  NGPS  N DFSK ++ KFHCSDLEW ++IPECPVYHPS+ EFEDPLVYLQ IAP
Sbjct: 35  DSFARSNGPSNGNNDFSKGEVVKFHCSDLEWINKIPECPVYHPSKEEFEDPLVYLQNIAP 94

Query: 62  GASRYGQLQCFS------------------------------------------------ 121
            ASRYG  +  S                                                
Sbjct: 95  EASRYGMCKIVSPFSASVPAGIVLMKEXSRVQPLRLAEWDTDDRMTFYKSGRNYTFRDFE 154

Query: 122 -------------------------FLHD------------------------------- 159
                                    F H+                               
Sbjct: 155 KMANKVFERRYCSSGCLPAKYLEKEFWHEIIGGKTDTVEYACDVDGTAFSSSPNDELGKS 214

BLAST of Carg08856 vs. TAIR 10
Match: AT5G46910.1 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein )

HSP 1 Score: 92.4 bits (228), Expect = 5.7e-19
Identity = 88/353 (24.93%), Postives = 108/353 (30.59%), Query Frame = 0

Query: 2   DSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIAP 61
           D+ S  +G S       K K++K    DL+WT+ +PECPVY P++ EFEDPL YLQKI P
Sbjct: 66  DTVSKVHGASTVRGGLMKEKVEKLETDDLKWTERLPECPVYRPTKEEFEDPLTYLQKIFP 125

Query: 62  GASRYGQLQCF------------------------------------------------- 121
            AS+YG  +                                                   
Sbjct: 126 EASKYGICKIVSPLTATVPAGAVLMKEKSNFKFTTRVQPLRLAEWDSDDKVTFFMSGRTY 185

Query: 122 -------------------------SFLHDLGW--------------------------- 158
                                    SFL    W                           
Sbjct: 186 TFRDYEKMANKVFARRYCSGGSLPDSFLEKEFWKEIACGKTETVEYACDVDGSAFSSAPG 245

BLAST of Carg08856 vs. TAIR 10
Match: AT5G04240.1 (Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein )

HSP 1 Score: 45.8 bits (107), Expect = 6.1e-05
Identity = 26/67 (38.81%), Postives = 34/67 (50.75%), Query Frame = 0

Query: 82  LQGITEPMLYIGMLFSIFAW------------------RMWRMVSCIDDAALRFENVVKE 131
           + G+T PM+YIGMLFS FAW                  + W  V C  D AL FE V+++
Sbjct: 285 IPGVTSPMVYIGMLFSWFAWHVEDHELHSMNYLHTGSPKTWYAVPC--DYALDFEEVIRK 344

BLAST of Carg08856 vs. TAIR 10
Match: AT1G08620.1 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein )

HSP 1 Score: 42.7 bits (99), Expect = 5.1e-04
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 0

Query: 35  EIPECPVYHPSEGEFEDPLVYLQKIAPGASRYG 68
           ++ + PV++PSE EFED L Y+ KI P A +YG
Sbjct: 142 DLEDAPVFYPSEEEFEDTLNYIAKIRPEAEKYG 174

BLAST of Carg08856 vs. TAIR 10
Match: AT1G08620.2 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein )

HSP 1 Score: 42.7 bits (99), Expect = 5.1e-04
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 0

Query: 35  EIPECPVYHPSEGEFEDPLVYLQKIAPGASRYG 68
           ++ + PV++PSE EFED L Y+ KI P A +YG
Sbjct: 142 DLEDAPVFYPSEEEFEDTLNYIAKIRPEAEKYG 174

BLAST of Carg08856 vs. TAIR 10
Match: AT2G34880.1 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein )

HSP 1 Score: 42.4 bits (98), Expect = 6.7e-04
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 0

Query: 35 EIPECPVYHPSEGEFEDPLVYLQKIAPGASRYG 68
          +I E PV+HP+  EFED L Y++KI P A  +G
Sbjct: 57 DIGEAPVFHPTSEEFEDTLAYIEKIRPLAESFG 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7036210.11.1e-157100.00Lysine-specific demethylase [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6606271.16.9e-12877.78Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6571642.13.9e-3827.59Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022963867.13.9e-3827.59lysine-specific demethylase JMJ706-like isoform X2 [Cucurbita moschata][more]
XP_022963862.15.1e-3827.54lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata] >XP_0229... [more]
Match NameE-valueIdentityDescription
Q336N82.3e-1726.45Lysine-specific demethylase JMJ706 OS=Oryza sativa subsp. japonica OX=39947 GN=J... [more]
Q6BDA08.5e-0438.81Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana OX=3702 GN=ELF... [more]
Match NameE-valueIdentityDescription
A0A6J1HGC91.9e-3827.59lysine-specific demethylase JMJ706-like isoform X2 OS=Cucurbita moschata OX=3662... [more]
A0A6J1HJ552.5e-3827.54lysine-specific demethylase JMJ706-like isoform X1 OS=Cucurbita moschata OX=3662... [more]
A0A5D3E5132.4e-3334.77Lysine-specific demethylase JMJ706-like protein OS=Cucumis melo var. makuwa OX=1... [more]
B9RZ081.0e-3137.30Transcription factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1315610 PE=4 ... [more]
A0A1S4E5H73.8e-3132.37LOW QUALITY PROTEIN: lysine-specific demethylase JMJ706-like OS=Cucumis melo OX=... [more]
Match NameE-valueIdentityDescription
AT5G46910.15.7e-1924.93Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) fam... [more]
AT5G04240.16.1e-0538.81Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) fami... [more]
AT1G08620.15.1e-0451.52Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) fam... [more]
AT1G08620.25.1e-0451.52Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) fam... [more]
AT2G34880.16.7e-0451.52Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) fam... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003349JmjN domainSMARTSM00545JmjN_1coord: 38..71
e-value: 0.0046
score: 21.5
IPR003349JmjN domainPFAMPF02375JmjNcoord: 40..67
e-value: 8.8E-8
score: 32.0
NoneNo IPR availableGENE3D2.60.120.650Cupincoord: 24..73
e-value: 2.5E-8
score: 35.6
NoneNo IPR availablePANTHERPTHR10694LYSINE-SPECIFIC DEMETHYLASEcoord: 11..67
coord: 73..102
coord: 134..160
NoneNo IPR availablePANTHERPTHR10694:SF33TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEINcoord: 134..160
coord: 73..102
NoneNo IPR availablePANTHERPTHR10694:SF33TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEINcoord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08856-RACarg08856-RAmRNA