Carg08856 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CAAAACCTCACAACTAAAAAATCACATATTACGCTTCTCTTTTTTACTCCCGATCCTTCCCGCCAGAAACTCGCCTTTCCCGCCGGGAAACCGCTTCAACCTCCGGGTACGTATTCGTCTCTTCCGAATACCGCTTATCATTCTCATTTTCCATACTCTTTTTGCTCTGATTGATTTAAGAATGGCTTTCGATCTCCAAGTAACTAGTCTGAGAATTCGGTTTTGTATCGTTTGTGATCAGCCTGCTGCTCGTCGAAGGCTTGGTTCTGTGTGTTCGTGATCATGACTATGACCTGAGTTTATTTTTCCGGATTTTGGATTTCCTTCGTGGTTCTGCTATTTTTCGGCGAAGTGATCACATACGGAGGCGTGTACGGAGTGATTTCGGCATGAGATGGTACTGATTCCGACTCTTTGTTTTTTTTGCTCGGAGTATGAACTTTCTTGTAGCCACACAAGATTGTTATTCGCTTCTTTTCAAGCTGATCGCTCTCTTTCCTCATGTTCGCTGAGATCTTGTACATTGTTTGGTTTCAGAAAAGTATCAGAAACGACAAACAATTTTTGTTTGCGTTTTTCACTAAAAAATTCTTGCCTCTTTTATGCAGCTTTCTGACTCGCAGAAAGTCTAAAGAGGAAATGGTTGAGTGGATGAACTTCTCTCTGGCTCGAAACTTTAGAAACTCTTTGTTTTTATCCATCTATTAATCTAATTTTGAATTTAATTTTCAGTTGTGTTTTTCCTCTAAAACTAGGACGCTGGACTTCCGTTTGAACTGTGAAGAATTTAATTGTATTTTAAAACAGATTTATCATAATATTATGTTGAGGTCGAACGCTTGAATTTTAGCAATATCTTATTGAACTGTTGTTTTCATTTTTATAATTCTGTCTCGTGCGGTACAAGTTCAGGTGCACTTACTGGTGAACATTAGCATGTTGGTTTGCCTCTGCTCTGTCTGTGTTCCGTGATAAGAATTGTAACTGACGTGCCTGAGTTTAGCTGATATAGTTTTAGATGAAGCTCGTGAATCTGTTCGATGGAGTGTTTTTTTATCCAACTTGATCAAGTGAAATAGGTAATAACTGCAATTCTACAAGCCTTGTTCCTCAATAGCTTCTCAAGTTCAAATATCTTGTACAAAATCAAAACTGAAATTTAGTCCTTAGCTAGTTGTACAGCCACATTTGCTATTTCATCCTGATTATAGTGTTGACGGGTGGAAGGACGAATCTACATTTCCAGAGAGTCTAAAAATAGCATAGAGTTTCTTTAACGAAAAAGGATTCAGCGAATGAAATCCGAAGCTGTTGCTGGGACAGTTACCGTAACAAATATGTTGATCAGAAGTGACGGACGGAGATGCTTTAAGAGCTTCGATATCTCGTGGCAAGAAATTTCACGACGATATGGATTCATTTTCCTGGCCAAATGGTCCTTCTTATAGGAATAAAGACTTTTCGAAGAGAAAAATTGATAAGTTTCACTGCAGTGATCTAGAATGGACTGATGAGATTCCAGAATGTCCCGTGTATCATCCCTCAGAAGGGGAATTTGAGGATCCTCTGGTTTATTTGCAGAAGATTGCTCCGGGAGCCTCCAGATATGGTCAGGTACCCTATTTTTTTCTATGCAAATCATAATTCCATGCCATATCTTAATTTTTTTTATGGATCTGAGAGCTTTAAATGATAATATTCTAGTTAGGCATCGCAATCCAGATATGGTCAGACACCCTATTTTTTCTATTCAAATCGTTATTCCAAGCCATATCTTAATTTTTTATGGATGTGAGAACTTTAAATAACAATGAGTGCTAGCTAGGCTTGAAATTTGGGATGTGAGAGCTTTAAAACATCAAGTTGTGTTCACTCGCATACTGCTTTGAAATTTGGGATATGCGGTACTAGTGGTGGAATAGAATTTGGTTTTGGTTATTTTGTGATGTTTAAAAACATTACCTATTATTTATATTCATTCATCATTATTATTATTTTTGTTTAAACAAACGCTTCTCTATGAAGATTACGGACTTCGCTGAAAATTTTGAAGTCAAGACTGATCACTTTAAATGTTTGAATATGTAATTATCGTTTTCAATTCCTCAATACGTTTGATCACTGCCCTTCTCATTATCACTTGGCTTGGTTTGTCAGTCAGTGATCGTTCTATGTATTTTGTTATATTGCTATTACACAGCACAACACACTTGGACATTGTGTATAAACGTAATGTATCATATGCCTGTTGACCTAAGACCACTTATCGTATTAAATTATATTGATTTCGTTAATGCATAATATAGATGGCCATTTGCATTGTTAAATAAACATTGTGGATTAATTGTTGATAGCTGTGAGCCTGTGACTACTTGTGATTGTGTGGGATGAGTCACTTTGTTTTTAGTTTTCTTTCTTGGTTGAGTTATAGACTTGGCTTTCTTTTGTAGGGATTTTCTCTTAGCTCTTCTATCTCTTCTGTAAGTTTTCGAAGACTTTCATCATTCCCGCTGAAATATTTTCATGACTTTTATACTTCCACAGACCTTTTCCCTTATTCACATAATCAAGGTTTCGCCCGTTGTTAATCATTTAATGGATTTGTTAGGTACAGAGGCGTTCCAACCATTTTAGTGCTCCCATTTTTAAAAACATTTAGTCTGAACATTATCAAAATGTGTCCTTAAATTATCGTTAGCATTTCTGGATAAGCTGAGCTTCATACAGGTTGATCTAATGAGACATGATACTCCGAAAGTTGCAATGCTTTAGTTTCTTACATGACTTGGGTTGGATCCTTCAAGGAATTACTGAGCCAATGCTATATATTGGAATGCTGTTTAGTATATTTGCCTGGCGCATGTGGAGGATGGTTTCCTGTATAGGTACGTTACCAAAATAGTCAAGATTTTCAGTAATCAGTACTACCCCTGGGATGATTAATTATTTTCATTGTTTCTTTATGGTTCCTTTGTGGAGCATCAAAAACTTGGTATTGTATTCCAGATGATGCGGCTTTGAGATTTGAGAACGTTGTCAAAGAAAATGTGTACAGAGAGGATATTCTGTCAGCAAATGGTGAGTATGGAGCTTTTGATGTTCTATCGGGAAAAACTGCATTGTTTCCTCCAAATATTCTGCTAAAGAGTATACCATGCTAGCTTTAGTCATGGTGAGTCATCCTAATCATTATCCTGTATTTTTTTCCTTGCACCTTATCCAATTATCAACATTTTTTCTTAGTTTGTAACGGGCAGTCTTTTCTTTTTCCTCTTCAAATCTATAGGCTTCAATTGTGGTGAAGCTGTGAACTTCGCCATTAGCTATTGGTTTCCTTTGGGTACTCTGGCTAGCCAGTGCATGCCCTTCTTAATTGAGTTCCTCTACTCACTCGCGAAGAACTTTTGTGTAATGAAGCAATGCTTCTACACACAAATTTAGAACTTGAAGATTCAGTTCATTCATTCGTGGATCAGTCTATCACCATTCCCTCAAGCTATCTCTTATGAGTCCGATTCGCTTCCACAATTGTGCTCGGTAGTTACTCATGAAATCCAGGGTGTGAACGGGGATTTCTCCAAGGTCCCATGGCACTATCCTCTGCAGTGTATGCATATGTCTGTTGCAGCTGTTATGGATATCATGTGTGCCTTTGCCATGGTATACTTCCTCGTTTTCTGCTTGAGAAATATGCTTGACATCCTATCAAAAAATGACTAAAATAAATTGAAATGTTACACATATGTTTGACATTTTGTTTAAAAATGATCGACCTCATTTTTTTTTTTTCTGAATGATGTATGTTTATATTGGGTCGTTGACTCTTTTGGCGTACAAAACTGACAAAGAGGAACGTATCACTTCGAAACTTTCATGTCTATCTATTAATTATCATCTTGAGGCTGTTGACTACAGCCTACAATGAAGTATATATATATATATAGGCAGGATTTTGACGAGTGGCGCCGCTGAAATATGTAGAACTGAAATGTCTGAGACTTCACGACGTCCAAAGCCAAACATTGTAAGATTTTGCTGTTTTCTTGAGATCTGGTTTTCGTTTCGTTTACAAAATTATTGACATTTCTTGAAAAAGAAAAAAAAAGGATTGGAGGAAGGCCCACATTTTGATTTAACTGAAGTCTCATCTGTTGCTTCCTTCCAAGCAGATACAGAAGCATGCTTATAATGAATTTGGAAATCATGAAACCCCCAGTGTTTCTCAAGTGTCGTGTTATACATGCGAGCCTTTTCCTTCCCTTCAACCAGGGGAGAACTGTTCAAGATCAGCTATTCGACCTCCTGGGGACCATAATGATGATGATTAG CAAAACCTCACAACTAAAAAATCACATATTACGCTTCTCTTTTTTACTCCCGATCCTTCCCGCCAGAAACTCGCCTTTCCCGCCGGGAAACCGCTTCAACCTCCGGCCTGCTGCTCGTCGAAGGCTTGGTTCTGTGTGTTCGTGATCATGACTATGACCTGAGTTTATTTTTCCGGATTTTGGATTTCCTTCGTGGTTCTGCTATTTTTCGGCGAAGTGATCACATACGGAGGCGTGTACGGAGTGATTTCGGCATGAGATGGACGCTGGACTTCCGTTTGAACTGTGAAGAATTTAATTAAGTGACGGACGGAGATGCTTTAAGAGCTTCGATATCTCGTGGCAAGAAATTTCACGACGATATGGATTCATTTTCCTGGCCAAATGGTCCTTCTTATAGGAATAAAGACTTTTCGAAGAGAAAAATTGATAAGTTTCACTGCAGTGATCTAGAATGGACTGATGAGATTCCAGAATGTCCCGTGTATCATCCCTCAGAAGGGGAATTTGAGGATCCTCTGGTTTATTTGCAGAAGATTGCTCCGGGAGCCTCCAGATATGGTCAGTTGCAATGCTTTAGTTTCTTACATGACTTGGGTTGGATCCTTCAAGGAATTACTGAGCCAATGCTATATATTGGAATGCTGTTTAGTATATTTGCCTGGCGCATGTGGAGGATGGTTTCCTGTATAGATGATGCGGCTTTGAGATTTGAGAACGTTGTCAAAGAAAATGTGTACAGAGAGGATATTCTGTCAGCAAATGGCTTCAATTGTGGTGAAGCTGTGAACTTCGCCATTAGCTATTGGTTTCCTTTGGGTACTCTGGCTAGCCAGTGCATGCCCTTCTTAATTGAGTTCCTCTACTCACTCGCGAAGAACTTTTGTGGTGTGAACGGGGATTTCTCCAAGGTCCCATGGCACTATCCTCTGCAGTGTATGCATATGTCTGTTGCAGCTGTTATGGATATCATGTGTGCCTTTGCCATGATACAGAAGCATGCTTATAATGAATTTGGAAATCATGAAACCCCCAGTGTTTCTCAAGTGTCGTGTTATACATGCGAGCCTTTTCCTTCCCTTCAACCAGGGGAGAACTGTTCAAGATCAGCTATTCGACCTCCTGGGGACCATAATGATGATGATTAG ATGGATTCATTTTCCTGGCCAAATGGTCCTTCTTATAGGAATAAAGACTTTTCGAAGAGAAAAATTGATAAGTTTCACTGCAGTGATCTAGAATGGACTGATGAGATTCCAGAATGTCCCGTGTATCATCCCTCAGAAGGGGAATTTGAGGATCCTCTGGTTTATTTGCAGAAGATTGCTCCGGGAGCCTCCAGATATGGTCAGTTGCAATGCTTTAGTTTCTTACATGACTTGGGTTGGATCCTTCAAGGAATTACTGAGCCAATGCTATATATTGGAATGCTGTTTAGTATATTTGCCTGGCGCATGTGGAGGATGGTTTCCTGTATAGATGATGCGGCTTTGAGATTTGAGAACGTTGTCAAAGAAAATGTGTACAGAGAGGATATTCTGTCAGCAAATGGCTTCAATTGTGGTGAAGCTGTGAACTTCGCCATTAGCTATTGGTTTCCTTTGGGTACTCTGGCTAGCCAGTGCATGCCCTTCTTAATTGAGTTCCTCTACTCACTCGCGAAGAACTTTTGTGGTGTGAACGGGGATTTCTCCAAGGTCCCATGGCACTATCCTCTGCAGTGTATGCATATGTCTGTTGCAGCTGTTATGGATATCATGTGTGCCTTTGCCATGATACAGAAGCATGCTTATAATGAATTTGGAAATCATGAAACCCCCAGTGTTTCTCAAGTGTCGTGTTATACATGCGAGCCTTTTCCTTCCCTTCAACCAGGGGAGAACTGTTCAAGATCAGCTATTCGACCTCCTGGGGACCATAATGATGATGATTAG MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIAPGASRYGQLQCFSFLHDLGWILQGITEPMLYIGMLFSIFAWRMWRMVSCIDDAALRFENVVKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLIEFLYSLAKNFCGVNGDFSKVPWHYPLQCMHMSVAAVMDIMCAFAMIQKHAYNEFGNHETPSVSQVSCYTCEPFPSLQPGENCSRSAIRPPGDHNDDD Homology
BLAST of Carg08856 vs. NCBI nr
Match: KAG7036210.1 (Lysine-specific demethylase [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 566.6 bits (1459), Expect = 1.1e-157 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of Carg08856 vs. NCBI nr
Match: KAG6606271.1 (Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 467.6 bits (1202), Expect = 6.9e-128 Identity = 238/306 (77.78%), Postives = 243/306 (79.41%), Query Frame = 0
BLAST of Carg08856 vs. NCBI nr
Match: KAG6571642.1 (Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 169.5 bits (428), Expect = 3.9e-38 Identity = 176/638 (27.59%), Postives = 204/638 (31.97%), Query Frame = 0
BLAST of Carg08856 vs. NCBI nr
Match: XP_022963867.1 (lysine-specific demethylase JMJ706-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 169.5 bits (428), Expect = 3.9e-38 Identity = 176/638 (27.59%), Postives = 204/638 (31.97%), Query Frame = 0
BLAST of Carg08856 vs. NCBI nr
Match: XP_022963862.1 (lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata] >XP_022963863.1 lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata] >XP_022963864.1 lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata] >XP_022963865.1 lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata] >XP_022963866.1 lysine-specific demethylase JMJ706-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 169.1 bits (427), Expect = 5.1e-38 Identity = 176/639 (27.54%), Postives = 204/639 (31.92%), Query Frame = 0
BLAST of Carg08856 vs. ExPASy Swiss-Prot
Match: Q336N8 (Lysine-specific demethylase JMJ706 OS=Oryza sativa subsp. japonica OX=39947 GN=JMJ706 PE=2 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 2.3e-17 Identity = 91/344 (26.45%), Postives = 117/344 (34.01%), Query Frame = 0
BLAST of Carg08856 vs. ExPASy Swiss-Prot
Match: Q6BDA0 (Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana OX=3702 GN=ELF6 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 8.5e-04 Identity = 26/67 (38.81%), Postives = 34/67 (50.75%), Query Frame = 0
BLAST of Carg08856 vs. ExPASy TrEMBL
Match: A0A6J1HGC9 (lysine-specific demethylase JMJ706-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464049 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38 Identity = 176/638 (27.59%), Postives = 204/638 (31.97%), Query Frame = 0
BLAST of Carg08856 vs. ExPASy TrEMBL
Match: A0A6J1HJ55 (lysine-specific demethylase JMJ706-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464049 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 2.5e-38 Identity = 176/639 (27.54%), Postives = 204/639 (31.92%), Query Frame = 0
BLAST of Carg08856 vs. ExPASy TrEMBL
Match: A0A5D3E513 (Lysine-specific demethylase JMJ706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004710 PE=4 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33 Identity = 113/325 (34.77%), Postives = 130/325 (40.00%), Query Frame = 0
BLAST of Carg08856 vs. ExPASy TrEMBL
Match: B9RZ08 (Transcription factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1315610 PE=4 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 1.0e-31 Identity = 94/252 (37.30%), Postives = 119/252 (47.22%), Query Frame = 0
BLAST of Carg08856 vs. ExPASy TrEMBL
Match: A0A1S4E5H7 (LOW QUALITY PROTEIN: lysine-specific demethylase JMJ706-like OS=Cucumis melo OX=3656 GN=LOC103503570 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 3.8e-31 Identity = 112/346 (32.37%), Postives = 128/346 (36.99%), Query Frame = 0
BLAST of Carg08856 vs. TAIR 10
Match: AT5G46910.1 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein ) HSP 1 Score: 92.4 bits (228), Expect = 5.7e-19 Identity = 88/353 (24.93%), Postives = 108/353 (30.59%), Query Frame = 0
BLAST of Carg08856 vs. TAIR 10
Match: AT5G04240.1 (Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein ) HSP 1 Score: 45.8 bits (107), Expect = 6.1e-05 Identity = 26/67 (38.81%), Postives = 34/67 (50.75%), Query Frame = 0
BLAST of Carg08856 vs. TAIR 10
Match: AT1G08620.1 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein ) HSP 1 Score: 42.7 bits (99), Expect = 5.1e-04 Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 0
BLAST of Carg08856 vs. TAIR 10
Match: AT1G08620.2 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein ) HSP 1 Score: 42.7 bits (99), Expect = 5.1e-04 Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 0
BLAST of Carg08856 vs. TAIR 10
Match: AT2G34880.1 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein ) HSP 1 Score: 42.4 bits (98), Expect = 6.7e-04 Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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