Carg08719 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08719
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein RADIALIS-like 3
Location	Carg_Chr09: 656473 .. 657044 (+)
RNA-Seq Expression	Carg08719
Synteny	Carg08719

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACCAGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGGTAATATCCTACTTGCTGATATTTCCTCTCCGAAATCATTCCAAGCCTGAAGCCTATCCTCAGTAATCTTCTCCTTTCTACTGGTACATTAGAATAAATGTCCTAAACAAGAAACTTGTGTCCTACAATTCCTGGAGAAATATATTGAGACGATTCTATAACCGGCCCGTTGTTAAAAATCGTTTGATGTGTAGTAAAATGTTCACGAAGTCGGTTAAGCTACGAAGCTTATTCATGCGTGAGAAAATCCAAGACCGCTTGAGGAGAAATGTATTCGCCGACGACTAA

mRNA sequence

ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACCAGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGTAAAATGTTCACGAAGTCGGTTAAGCTACGAAGCTTATTCATGCGTGAGAAAATCCAAGACCGCTTGAGGAGAAATGTATTCGCCGACGACTAA

Coding sequence (CDS)

ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACCAGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGTAAAATGTTCACGAAGTCGGTTAAGCTACGAAGCTTATTCATGCGTGAGAAAATCCAAGACCGCTTGAGGAGAAATGTATTCGCCGACGACTAA

Protein sequence

MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTKSVKLRSLFMREKIQDRLRRNVFADD

Homology

[Close]

BLAST of Carg08719 vs. NCBI nr
Match: XP_022936283.1 (protein RADIALIS-like 3 [Cucurbita moschata] >KAG6591311.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024194.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.2 bits (622), Expect = 6.0e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTKSVKLRSLFMREKIQDRLRRN 120
           ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTKSVKLRSLFMREKIQDRLRRN
Sbjct: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTKSVKLRSLFMREKIQDRLRRN 120

Query: 121 VFADD 126
           VFADD
Sbjct: 121 VFADD 125

[Close]

BLAST of Carg08719 vs. NCBI nr
Match: XP_008466554.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KAA0041600.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 3.2e-38
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK 95
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Sbjct: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ 93

[Close]

BLAST of Carg08719 vs. NCBI nr
Match: KGN60114.2 (hypothetical protein Csa_000871 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 3.2e-38
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK 95
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Sbjct: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ 93

[Close]

BLAST of Carg08719 vs. NCBI nr
Match: XP_022155868.1 (protein RADIALIS-like 4 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 9.6e-35
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS ARGFYSSWTK+ENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTS-ARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGR 89
          ELL RDVKKIEAGQVQIPLYKN G NGR
Sbjct: 61 ELLERDVKKIEAGQVQIPLYKNTGYNGR 87

[Close]

BLAST of Carg08719 vs. NCBI nr
Match: XP_022940511.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 147.9 bits (372), Expect = 5.8e-32
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS T+ A GFYSSWTK+ENKKFEEALA+YDQDTPDRFE VARAVGGGKTAEE RRLY
Sbjct: 1  MASSSRTT-AHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNG 88
          ELLVRDV KIEAGQVQIPLYKNVG NG
Sbjct: 61 ELLVRDVNKIEAGQVQIPLYKNVGYNG 86

[Close]

BLAST of Carg08719 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-18
Identity = 59/107 (55.14%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y
Sbjct: 1   MASGSMSSYGSG---SWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQY 60

Query: 61  ELLVRDVKKIEAGQVQIPLYK-NVGCNGRG-YADQKSKMFTKSVKLR 106
           +LLVRD++ IE G V  P YK   G + RG   D++ +M  +S+KL+
Sbjct: 61  DLLVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRM--RSMKLQ 101

[Close]

BLAST of Carg08719 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-18
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS+S++S+A     SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR Y
Sbjct: 1  MASNSMSSSA-----SWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCN 87
          ELL+RDV  IE+G+   P Y++ G N
Sbjct: 61 ELLIRDVNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Carg08719 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R Y
Sbjct: 1  MASSSMSSQSSG---SWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSK 97
          ELLV+D+  IE G V  P Y+  G    G   Q+ K
Sbjct: 61 ELLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEK 92

[Close]

BLAST of Carg08719 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-16
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y
Sbjct: 1  MASSSMSSS-----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD 93
          ++LV D+  IE   V +P YK  +VG   RG  D
Sbjct: 61 DILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of Carg08719 vs. ExPASy Swiss-Prot
Match: Q1G3C4 (Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-15
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R Y
Sbjct: 1  MASSSMST------SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKN 83
          ELL+RDV  IE+G+   P Y+N
Sbjct: 61 ELLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of Carg08719 vs. ExPASy TrEMBL
Match: A0A6J1FCU5 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111442950 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.9e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTKSVKLRSLFMREKIQDRLRRN 120
           ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTKSVKLRSLFMREKIQDRLRRN
Sbjct: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTKSVKLRSLFMREKIQDRLRRN 120

Query: 121 VFADD 126
           VFADD
Sbjct: 121 VFADD 125

[Close]

BLAST of Carg08719 vs. ExPASy TrEMBL
Match: A0A5A7TE80 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00690 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK 95
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Sbjct: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ 93

[Close]

BLAST of Carg08719 vs. ExPASy TrEMBL
Match: A0A0A0LGL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK 95
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Sbjct: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ 93

[Close]

BLAST of Carg08719 vs. ExPASy TrEMBL
Match: A0A1S3CRN8 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK 95
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Sbjct: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ 93

[Close]

BLAST of Carg08719 vs. ExPASy TrEMBL
Match: A0A6J1DP29 (protein RADIALIS-like 4 OS=Momordica charantia OX=3673 GN=LOC111022857 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.7e-35
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS ARGFYSSWTK+ENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTS-ARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGR 89
          ELL RDVKKIEAGQVQIPLYKN G NGR
Sbjct: 61 ELLERDVKKIEAGQVQIPLYKNTGYNGR 87

[Close]

BLAST of Carg08719 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-19
Identity = 59/107 (55.14%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y
Sbjct: 1   MASGSMSSYGSG---SWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQY 60

Query: 61  ELLVRDVKKIEAGQVQIPLYK-NVGCNGRG-YADQKSKMFTKSVKLR 106
           +LLVRD++ IE G V  P YK   G + RG   D++ +M  +S+KL+
Sbjct: 61  DLLVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRM--RSMKLQ 101

[Close]

BLAST of Carg08719 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-18
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R Y
Sbjct: 1  MASSSMSSQSSG---SWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSK 97
          ELLV+D+  IE G V  P Y+  G    G   Q+ K
Sbjct: 61 ELLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEK 92

[Close]

BLAST of Carg08719 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-17
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 6   VTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVR 65
           + S +R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV 
Sbjct: 1   MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 60

Query: 66  DVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK 101
           D+  IE G+V +P YK    N R   D  ++  TK
Sbjct: 61  DLINIETGRVPLPNYKTFESNSRSINDFDTRYITK 94

[Close]

BLAST of Carg08719 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-17
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y
Sbjct: 1  MASSSMSSS-----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD 93
          ++LV D+  IE   V +P YK  +VG   RG  D
Sbjct: 61 DILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of Carg08719 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 84.3 bits (207), Expect = 7.4e-17
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R Y
Sbjct: 1  MASSSMST------SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKN 83
          ELL+RDV  IE+G+   P Y+N
Sbjct: 61 ELLLRDVNDIESGRYPQPRYRN 75

The following BLAST results are available for this feature:

BLAST of Carg08719 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936283.1	6.0e-61	100.00	protein RADIALIS-like 3 [Cucurbita moschata] >KAG6591311.1 Protein RADIALIS-like...	[more]
XP_008466554.1	3.2e-38	90.43	PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KAA0041600.1 protein RADIALIS...	[more]
KGN60114.2	3.2e-38	90.43	hypothetical protein Csa_000871 [Cucumis sativus]	[more]
XP_022155868.1	9.6e-35	93.18	protein RADIALIS-like 4 [Momordica charantia]	[more]
XP_022940511.1	5.8e-32	88.51	protein RADIALIS-like 3 [Cucurbita moschata]	[more]

BLAST of Carg08719 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIJ5	2.2e-18	55.14	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	2.2e-18	61.63	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
F4JVB8	1.4e-17	53.13	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q8GW75	3.6e-16	53.19	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q1G3C4	1.0e-15	56.10	Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1	[more]

BLAST of Carg08719 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCU5	2.9e-61	100.00	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111442950 PE=4 SV=1	[more]
A0A5A7TE80	1.5e-38	90.43	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LGL4	1.5e-38	90.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1	[more]
A0A1S3CRN8	1.5e-38	90.43	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1	[more]
A0A6J1DP29	4.7e-35	93.18	protein RADIALIS-like 4 OS=Momordica charantia OX=3673 GN=LOC111022857 PE=4 SV=1	[more]

BLAST of Carg08719 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	1.6e-19	55.14	Homeodomain-like superfamily protein	[more]
AT4G39250.1	1.0e-18	53.13	RAD-like 1	[more]
AT1G75250.1	2.5e-17	48.42	RAD-like 6	[more]
AT1G19510.1	2.5e-17	53.19	RAD-like 5	[more]
AT2G18328.1	7.4e-17	56.10	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 9..77 e-value: 4.2E-18 score: 66.9
None	No IPR available	PANTHER	PTHR43952:SF40	OS05G0579600 PROTEIN	coord: 1..88
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..88
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08719-RA	Carg08719-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity