Carg08690 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08690
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP synthase subunit e, mitochondrial
Location	Carg_Chr09: 523984 .. 525814 (-)
RNA-Seq Expression	Carg08690
Synteny	Carg08690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTATTTACTGTTTCTTTTACCTTTAATCATTTGCAGTGATTTTATTTAGCTCGATCCCTGTGATGTCCCGTATCCACTCTGTTCTTTTCAAGCTGGTTAGAATAGGATTTCAATGCATCTAGATTTTTTCGTTCCGAATTCTCCACGAGGTGGTAATTGGTGAGAATGGATGGATCTGCGATTCAAAAAATTTTATTTTCTTTTTCGTATTTCTTCATTATTTTGTTTTTATATCCTTTATTGGGAATGAGATGGATCCTGTTCATTTGAGATTCTGAATCTTTTTTGGGAATTGATTTCTGCAGGTAGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGGTAAATTGGAATCAACTTCTGTTCCAACCGTTGTTGTTATCGTAAATTTATTGAAATGGTTATTTTTGTAGTTGATTGTATGGCGCCTCTGCTAAATCAACTCCGTATTTATTAATAATGACTATTTTCACTCCTTAATGGACATGAACTCAACATTAACCTGTTTCACTAATGGTTTCAACTTGTTTTCTTTTGGAGACAAGATTTCTTCACTGCCTTATTTTCATGGGCATTTCTAATTTAAGGAAGAAGTCTCGTTGGACACTTGAAGTTCAAATCTTGTACCTGTTAATTGGCTCAACTGTGACCCAAAAATTTTCTGAAAGAAAATTGGCTGTATGTGTTCATATGCATTTAGCTGTAAGACATTTTTGTTGATGAGTTTCTTCTGGTTACGTCATCTTCAATTCCATGCCTTATAATTTGTTTTTTTACAGCATGTAAGCACAGGAAACATAGACCGGCTTATATATCTTGATCAGTTAATTGTATAGAATATGAATTTGATTGTCTAATAACGTGTCTTTTGGCTGTATTTTCGTGCATTTGCCAGGCAAAGGCCAAGTCACGCGCGAAAGCTGAAGCCAAGGCCCATCATTGATGAACACTTTTCCTGACGTAGCTTATAGCGATGGAAGAGATGGAAATTACCGCATAGGGAGAGACTCCGATCATTGGTTGGAGAATGTGATTTTTGGCTTGATAATTAATTAGATTCAGTTTTTTTTTTTTTTCCTTTTTTCTTTTCCTTCACTGCTGAAACAAAAGAAAAGTTCTCTGTTTAAACGGGGTTGGTATTGCTGCAAATACTATATGGTGTATGCTTAGTTTTTCAGTTCCGATTGGCAATTCTGCCTGTGAGAAGAATGTTCTTGAAATAAAGGTGACGCCATACTGATAAATAAGACTCGTTTGAGATTTATTTTTTATCACAGTACCACTTCTAATCTCACTTTTGAGTTAAAGCTTTATGATTGGTATTGATCTCTATCCTGTGGTTCAGTTTATAGGGTCGTGTTCTAAGAAATAAAAGAAAACAGAAACACAAGGCAGTGTATGAGCAAAAACTCTAGAACATATTATCTTACTATAAAATCTCTAGACAACGGAAATATGCAAATGAAAGACAGGCAACAAAGATAAGGCTCCATCGTGAACCTTGCATACCCAGATGGATGGTTCGTGGGTATACCTTCAGAAGGCGCAGCATGGCTAACTTGTTGAAGTTTTTTCTTTTGTTCTACTGAATTCAGAAAGAGTACAATTTGGAAGGAACTGAATCTACTTCAACTACAGCTCCCAGCAATCAAGACGAAAGCTTCATGCTAACACTCGGCCTTCTTCGAGCTTGTGACAGTAATTATACTAAACTCGATTCTCGCCTAACGAAGAAGAAGAATCGGCCTTCATGA

mRNA sequence

ATGGCACTTCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTAGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGAAAGAGTACAATTTGGAAGGAACTGAATCTACTTCAACTACAGCTCCCAGCAATCAAGACGAAAGCTTCATGCTAACACTCGGCCTTCTTCGAGCTTGTGACAGTAATTATACTAAACTCGATTCTCGCCTAACGAAGAAGAAGAATCGGCCTTCATGA

Coding sequence (CDS)

ATGGCACTTCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTAGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGAAAGAGTACAATTTGGAAGGAACTGAATCTACTTCAACTACAGCTCCCAGCAATCAAGACGAAAGCTTCATGCTAACACTCGGCCTTCTTCGAGCTTGTGACAGTAATTATACTAAACTCGATTCTCGCCTAACGAAGAAGAAGAATCGGCCTTCATGA

Protein sequence

MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYNLEGTESTSTTAPSNQDESFMLTLGLLRACDSNYTKLDSRLTKKKNRPS

Homology

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: KAG7024166.1 (hypothetical protein SDJN02_12979, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.6 bits (444), Expect = 1.9e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYNLEGTESTSTTAPSNQDES 60
          MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYNLEGTESTSTTAPSNQDES
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYNLEGTESTSTTAPSNQDES 60

Query: 61 FMLTLGLLRACDSNYTKLDSRLTKKKNRPS 91
          FMLTLGLLRACDSNYTKLDSRLTKKKNRPS
Sbjct: 61 FMLTLGLLRACDSNYTKLDSRLTKKKNRPS 90

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: XP_022974819.1 (uncharacterized protein LOC111473599 [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 38

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: XP_022936650.1 (uncharacterized protein LOC111443182 [Cucurbita moschata] >XP_023536066.1 uncharacterized protein LOC111797320 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 38

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: XP_008466504.1 (PREDICTED: uncharacterized protein LOC103503894 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MA PPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 38

[Close]

BLAST of Carg08690 vs. NCBI nr
Match: KAA0063268.1 (ATP synthase E chain [Cucumis melo var. makuwa] >TYK31506.1 ATP synthase E chain [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
           MA PPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK
Sbjct: 94  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 131

[Close]

BLAST of Carg08690 vs. ExPASy TrEMBL
Match: A0A6J1IIN9 (uncharacterized protein LOC111473599 OS=Cucurbita maxima OX=3661 GN=LOC111473599 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.8e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 38

[Close]

BLAST of Carg08690 vs. ExPASy TrEMBL
Match: A0A6J1FEB4 (uncharacterized protein LOC111443182 OS=Cucurbita moschata OX=3662 GN=LOC111443182 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.8e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 38

[Close]

BLAST of Carg08690 vs. ExPASy TrEMBL
Match: A0A5A7V6P3 (ATP synthase E chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008240 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
           MA PPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK
Sbjct: 94  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 131

[Close]

BLAST of Carg08690 vs. ExPASy TrEMBL
Match: A0A1S3CRK7 (uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MA PPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 38

[Close]

BLAST of Carg08690 vs. ExPASy TrEMBL
Match: A0A067H1L4 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0354532mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK 39
          MA PPGPYSGTSTLALVARASAFTFG+VYGN+KLK+LK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGNMKLKILK 38

[Close]

BLAST of Carg08690 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 9.7e-11
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEY 42
          MA PPG YSGTSTLALVARASAF  GL+YGNIKLK LK ++
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKHKF 41

[Close]

BLAST of Carg08690 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLK-KEYNLEGTESTS 51
          M LPPG YSGTS+LALVARASAF  GLVYGN+KLKVLK K  + +  E+T+
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATA 51

[Close]

BLAST of Carg08690 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYN 43
          MA PPG YSGTSTLALVARASAF  GL+YGNIKLK LK + N
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKN 42

[Close]

BLAST of Carg08690 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKKEYNLEGTESTS 51
          M LPPG YSGTS+LALVARASAF  GLVYGN+KLK+  K  + +  E+T+
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKI--KSMSQKKVEATA 48

The following BLAST results are available for this feature:

BLAST of Carg08690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024166.1	1.9e-40	100.00	hypothetical protein SDJN02_12979, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022974819.1	2.0e-10	100.00	uncharacterized protein LOC111473599 [Cucurbita maxima]	[more]
XP_022936650.1	2.0e-10	100.00	uncharacterized protein LOC111443182 [Cucurbita moschata] >XP_023536066.1 unchar...	[more]
XP_008466504.1	1.3e-09	97.37	PREDICTED: uncharacterized protein LOC103503894 [Cucumis melo]	[more]
KAA0063268.1	1.3e-09	97.37	ATP synthase E chain [Cucumis melo var. makuwa] >TYK31506.1 ATP synthase E chain...	[more]

BLAST of Carg08690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IIN9	9.8e-11	100.00	uncharacterized protein LOC111473599 OS=Cucurbita maxima OX=3661 GN=LOC111473599...	[more]
A0A6J1FEB4	9.8e-11	100.00	uncharacterized protein LOC111443182 OS=Cucurbita moschata OX=3662 GN=LOC1114431...	[more]
A0A5A7V6P3	6.4e-10	97.37	ATP synthase E chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455...	[more]
A0A1S3CRK7	6.4e-10	97.37	uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=...	[more]
A0A067H1L4	4.1e-09	89.47	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0354532mg PE=4 SV=...	[more]

BLAST of Carg08690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01130.2	9.7e-11	78.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.1	1.3e-10	68.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G01130.1	1.7e-10	78.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.2	2.4e-09	64.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36028	OSJNBB0050O03.8 PROTEIN	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08690-RA	Carg08690-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity