Carg08688 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08688
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nucleic acid-binding, OB-fold containing protein
Location	Carg_Chr09: 515076 .. 517074 (-)
RNA-Seq Expression	Carg08688
Synteny	Carg08688

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAGTAACTCGAACTTCTTTTACGCTTTCAACATTCTCGTCTCTAATTGCCTGCAATCACAATATTTTCCAGTTACTGATATTGTTGCTTTGTTGATGTATTTATTTTTTTTCTTTGAGCATCTTGATTGGGGATGCTATCTTTTAATGGCAGAATTTGACTAGTACAACCTTCAATTTCGCCGCAATTTAACTTAGTTTTTTCCTGCATTTTTATCAACTGGCGTTTTTTTTTCATTGCTGGCTTGCTATTCTGTATTGAAGAAATAAACACCTGGTTGTGCTGTTGTTTGTGAACTCAGAATGTAAGTTTTTGTGACTTCCATGATTAGGGAATAGAAATGTTCTTCATTTAATTTTGACACAAAGGCGCAAAAGTTGAACTTCTAGTGATTCTCATTGCTGCTTCTTTTGCTTCATTCAATCAGCATTCAATTTCATTTATGTGGTACATACATGTGAACTTGTATTGAACTGACTTTGTTTAAATTGTACTTCGCGTGTAGATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCTATGATTCTCACAGTATTGCCATTAGGAAAACAACACATTTAGAATAGAAGTTGTCCATGCTTTTCTGATAGTTTGGTTATCACTTCAGAGGGAAAGGTGGTAAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAGTATGTTTTGTGCATTGTACTTGAGAATTCATACCTTTCCCTTTGCTGTACATATGAGAAGGAAGTTCTTGATATCTTGTTCTGACTGTATTATGCATTGATTTTGACATAGAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGGTTAGATTTTTTCCCTTTAATCACGTTTATTCTGTATCATTGAAGTGGAAAGTTATTCTTGGAGTTTTCATTCAATTAATTGGGGCCGGAACATCAACCTCATATTTATTGATGTTTGCTGATTCTTGTTGTTCTGCTTCAGTAATCTTAATATCTTGATGTTAAAAGAAGTGACTTAATTCATCCTTTACAGTTTTGATGAGGGAATACTTCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGTGAGATAATACTACATTCTGTGAGGTTTTAAGCTATAATCCCCAAATCTACTATTTTAATTTTTTTTCGCCAAATTCTGTAGGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAGTCAAAAACGAAAAGGCAAAAAACTACCAGATTATCTTGAAGAATGCTAATTCTCATATAACATAGATCGTCTACATATCAGGTAACTTTTCCTACTCCCTCATTAGGATGGCTAATTTCTTGCTCTCACTCAATTCATGCCTAAAATCTTCATTACCCAGAAATTTTGCCTGGAAAGTAGACTTGAATTCAATTGTTTTCCTAGTGTAAGAAATGCTTGGGAGAAGCACCTTGCCCTTGGGAATATCACCTCAACTTTGATAATGACTTAACTTTATATATCAGGGTGTGGACAAATGCAGCTACCCATTTTTGCAACTGTTAAGAAGAGATAGCCCAAATGCATATATTATGAGGTTAGGGCCAATATACATGGTT

mRNA sequence

ATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTAAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGTTTTGATGAGGGAATACTTCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAGTCAAAAACGAAAAGGCAAAAAACTACCAGATTATCTTGAAGAATGCTAATTCTCATATAACATAGATCGTCTACATATCAGGGTGTGGACAAATGCAGCTACCCATTTTTGCAACTGTTAAGAAGAGATAGCCCAAATGCATATATTATGAGGTTAGGGCCAATATACATGGTT

Coding sequence (CDS)

ATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTAAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGTTTTGATGAGGGAATACTTCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAGTCAAAAACGAAAAGGCAAAAAACTACCAGATTATCTTGA

Protein sequence

MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS

Homology

[Close]

BLAST of Carg08688 vs. NCBI nr
Match: KAG7024164.1 (rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 424.5 bits (1090), Expect = 5.8e-115
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180

Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS 224
           VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS 223

[Close]

BLAST of Carg08688 vs. NCBI nr
Match: XP_022936799.1 (uncharacterized protein LOC111443277 [Cucurbita moschata] >XP_022936800.1 uncharacterized protein LOC111443277 [Cucurbita moschata])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180

Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS 224
           VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQ+TTRLS
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 223

[Close]

BLAST of Carg08688 vs. NCBI nr
Match: XP_023535184.1 (uncharacterized protein LOC111796686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 421.4 bits (1082), Expect = 4.9e-114
Identity = 221/223 (99.10%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180

Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS 224
           VEGLATNKSKRKMREDEATDINALILNDDHQSKTK+QKT RLS
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKKQKTARLS 223

[Close]

BLAST of Carg08688 vs. NCBI nr
Match: XP_022974791.1 (uncharacterized protein LOC111473544 [Cucurbita maxima] >XP_022974796.1 uncharacterized protein LOC111473544 [Cucurbita maxima])

HSP 1 Score: 415.2 bits (1066), Expect = 3.5e-112
Identity = 218/223 (97.76%), Postives = 220/223 (98.65%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAIL ELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILHELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDI SEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDISSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KHITRHGEEMLVSRANKHHVIKVGT+IRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTIIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180

Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS 224
           VEGLATNKSKRKMREDEATDINALILNDDHQSKTK+QK TRLS
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKKQKITRLS 223

[Close]

BLAST of Carg08688 vs. NCBI nr
Match: KAG6591280.1 (hypothetical protein SDJN03_13626, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407.1 bits (1045), Expect = 9.5e-110
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180

Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKT 215
           VEGLATNKSKRKMREDEATDINALILNDDHQS T
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSST 214

[Close]

BLAST of Carg08688 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-08
Identity = 43/163 (26.38%), Postives = 83/163 (50.92%), Query Frame = 0


Query: 10  DLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYE-AKIIDKSAKILSGVHPYF 69
           DL + + P  S     AI   + +M+L    +  G++LAY+  + ++KSAK++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 70  AVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEFKHITRH-G 129
            + ++  +L+FSPK    LEGK+  +    I +++LG  +A I  + I  ++  I     
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 130 EEMLVSRANKHHVIKVGTMIRFLVKSF--DEGILHISGSLVPS 169
           EE    + N  ++++ G  + F+V     + G+  + G+L  S
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLTMVQGTLANS 173

[Close]

BLAST of Carg08688 vs. ExPASy TrEMBL
Match: A0A6J1F9B5 (uncharacterized protein LOC111443277 OS=Cucurbita moschata OX=3662 GN=LOC111443277 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.2e-115
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180

Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS 224
           VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQ+TTRLS
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQRTTRLS 223

[Close]

BLAST of Carg08688 vs. ExPASy TrEMBL
Match: A0A6J1ICE8 (uncharacterized protein LOC111473544 OS=Cucurbita maxima OX=3661 GN=LOC111473544 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 218/223 (97.76%), Postives = 220/223 (98.65%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDADLVIYLHPAKSNKVSQAIL ELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI
Sbjct: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILHELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDI SEF
Sbjct: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDISSEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KHITRHGEEMLVSRANKHHVIKVGT+IRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS
Sbjct: 121 KHITRHGEEMLVSRANKHHVIKVGTIIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180

Query: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTTRLS 224
           VEGLATNKSKRKMREDEATDINALILNDDHQSKTK+QK TRLS
Sbjct: 181 VEGLATNKSKRKMREDEATDINALILNDDHQSKTKKQKITRLS 223

[Close]

BLAST of Carg08688 vs. ExPASy TrEMBL
Match: A0A6J1FN75 (uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445794 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.8e-98
Identity = 191/232 (82.33%), Postives = 213/232 (91.81%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA+LVIY+HP+KS KVSQA+LRELGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KH T+HGEEM VSRANKHHVIKVGTM+RFLVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 VEGLATNKSKRKMREDE---------ATDINALILNDDHQSKTKRQKTTRLS 224
           VEG  T++S++K R+++         ATD+NAL+LN+DHQSKTK+QKT+R+S
Sbjct: 181 VEGSVTSRSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of Carg08688 vs. ExPASy TrEMBL
Match: A0A6J1IWP0 (uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481277 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.8e-97
Identity = 188/227 (82.82%), Postives = 209/227 (92.07%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA+LVIY+HP+KS KVSQA+LR+LGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRDLGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KH T+HGEEM VSRA+KHHVIKVGTM+RFLVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 VEGLATNKSKRKMREDE---------ATDINALILNDDHQSKTKRQK 219
           VEG  TN+S++KMR+++         ATD+NAL+LN+DHQSKTK+QK
Sbjct: 181 VEGSVTNRSRKKMRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQK 227

[Close]

BLAST of Carg08688 vs. ExPASy TrEMBL
Match: A0A6J1FPG3 (uncharacterized protein LOC111445794 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445794 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.8e-97
Identity = 191/232 (82.33%), Postives = 212/232 (91.38%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA+LVIY+HP+KS KVSQA+LRELGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KH T+HGEEM VSRANKHHVIKVGTM+RFLVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 VEGLATNKSKRKMREDE---------ATDINALILNDDHQSKTKRQKTTRLS 224
           VEG  T +S++K R+++         ATD+NAL+LN+DHQSKTK+QKT+R+S
Sbjct: 181 VEGSVT-RSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 231

[Close]

BLAST of Carg08688 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases )

HSP 1 Score: 219.9 bits (559), Expect = 2.0e-57
Identity = 105/194 (54.12%), Postives = 148/194 (76.29%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLK+S+A+L+I++HP++S  V Q I REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           L+G+HPYF V +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVITD DIR EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           K+  R GE   VSR++K H +K+GTM+R  V+SFDE ++HI+GSL+P +TG +  LEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VEGLATNKSKRKMR 195
            E L T++  ++ +
Sbjct: 181 EEALPTDRDHKRRK 194

[Close]

BLAST of Carg08688 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases )

HSP 1 Score: 219.9 bits (559), Expect = 2.0e-57
Identity = 105/194 (54.12%), Postives = 148/194 (76.29%), Query Frame = 0


Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLK+S+A+L+I++HP++S  V Q I REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           L+G+HPYF V +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVITD DIR EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           K+  R GE   VSR++K H +K+GTM+R  V+SFDE ++HI+GSL+P +TG +  LEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VEGLATNKSKRKMR 195
            E L T++  ++ +
Sbjct: 181 EEALPTDRDHKRRK 194

The following BLAST results are available for this feature:

BLAST of Carg08688 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024164.1	5.8e-115	100.00	rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022936799.1	1.3e-114	99.55	uncharacterized protein LOC111443277 [Cucurbita moschata] >XP_022936800.1 unchar...	[more]
XP_023535184.1	4.9e-114	99.10	uncharacterized protein LOC111796686 [Cucurbita pepo subsp. pepo]	[more]
XP_022974791.1	3.5e-112	97.76	uncharacterized protein LOC111473544 [Cucurbita maxima] >XP_022974796.1 uncharac...	[more]
KAG6591280.1	9.5e-110	99.53	hypothetical protein SDJN03_13626, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg08688 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O43036	8.3e-08	26.38	DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of Carg08688 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9B5	6.2e-115	99.55	uncharacterized protein LOC111443277 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A6J1ICE8	1.7e-112	97.76	uncharacterized protein LOC111473544 OS=Cucurbita maxima OX=3661 GN=LOC111473544...	[more]
A0A6J1FN75	1.8e-98	82.33	uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IWP0	5.8e-97	82.82	uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FPG3	5.8e-97	82.33	uncharacterized protein LOC111445794 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Carg08688 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75670.1	2.0e-57	54.12	DNA-directed RNA polymerases	[more]
AT1G75670.2	2.0e-57	54.12	DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.1060		coord: 86..222 e-value: 1.6E-7 score: 33.6
None	No IPR available	PANTHER	PTHR12709:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43	coord: 1..197
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 2..83 e-value: 8.2E-8 score: 34.0
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08688-RA	Carg08688-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity