Carg08684 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08684
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr09: 485319 .. 487422 (-)
RNA-Seq Expression	Carg08684
Synteny	Carg08684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGTGGAGGCGAGAAAGCGAAGGTGCTACTGTCATTTCTGAATTCCTTGGATTCGATTGCTTTGCTTCTGAGAGCAGCTCCGAATCAGGGAGATAGAAAGAGGGTCTCAGTTCTAATTCCTGAAGAAATACTTGAGGCTGTAGTTTGTTTCAAAGCTACAAAGCTTCACCACGCATTTCAGGATTTGGATATCCGTTATTGGCTGCCTCTGTTGTGCTACAGACCCACCACCATCAACAGCCTGCCAGTTGGAATAATCTGCTATCCAAAAAGAAAAGGAAAAAAAAAAAAAAAAACTGCTTTAGGCCTTCCTTGCTCAGCCCATATAGCCCCAACGCCTAGTCAGGAATTTCACGGCCCAAGTTCTATAAGCCGAAAATATGGGGGTGGTCCGGACTAGAGAAAATGAAGGTGACGACAAAGCAACAACCAACAGAGATATAATTAGAGGCACATGTGGGAGAAAGAGAAGAACTTATTGCCAACTACAGCTTCACAAAACGTGAAATCCAAGTTTTAACACATCCTTCCACAAGGCGAGGCCCCCACACCCACCTGTCTTTTCCTTTTCCAGCTAGACTACCTCTCTCTATTCGCTACCCCTTTGTTTCTTTCCCCTTTAACTTTCTTATGGGCACAAACACACAATTCTAAAGGTAAATGTCATTTCGTTTCAAGCTCTTTTCTTTACTACAGAATGACATCGAGCCAGCCGACTGGGACAACCATACAGAAGCAATCTCCAACCAACAATGCACTATGTATATGTTTCTTAAATGAAAGCTTTGAATGCAGGTTTATGGACTAATTGGAAAAGAGAACAAGGGCTGAGGTCATGTAATGTGGCCCAATTTTCAGAGACCCAGCCAGGCCCTATAAAATCCAACCCTCCTCCTCACGTGCCCTCTTCTCAGCATCGGATCTTGTGAAGTTGGTGAGATTTCTTTCCCTTTTTTTTTTTTCTTTCTTTCTTTCTTTTTTCAAGTCATGGGACATGCAATTTTACTATACCCATCTGGGACTGGGACTTGGAAAAGTTGAAGAAGTATTGTCTTTTCCTGGGTCCCCCAATTGTTAATTATTTAAAACGAGAGGGGGTCGGAACTCTGAAGTATTATTTTATTTGGATTCCTTTATTAATATCGATCTTCTATGGGGACGTTAAGTGATATTATTAAAACATTCTGTGTCTCGCCATCGCGTTATCCATTCATGAGTGCATATACATCTTTAACACTCAATAATTCGCTAAGCTGATTCCCTTCATTTTGCTGGAGAAGTGATTCCCTCACCCTACAGTGACGCTTGTCGGTCACATTCACAATGTCGGTAAAAACAGTGTTCTGTTTCAGTAATTATTCCTTACCAATTTACATACTAAAATCCTAGATTTATTGTAAGGGTTTTCAACAAATGGCAGCTAAAGCTAGAGGAACAAGTAGAAAAGGAAAATGCAAAGAGAGAGCCGTTTGATTCAAATTGGACGGTGATTAAAGGGTGAAGTTTATACCATTAATTGTCCTTCTCTACACACATCCCAAGGCGTCCCTCTATTTTAATACGACTTTTATTTATGGAACTCAAAAACGGGTTTCATTAGCGAAATCTTCACCGAGACAAATCCACAATTGGCTTTAAGGATTTCAAACGCCTCATTTGTCTGCAGGCGCGCTCTCCCTCTCTCTCTCTGTCTCGCTCGCCTTCGTCTCTCCATCCTCATCTTTTTCTCTACTTTTCCGACGGTCCGCCGAGGCATTTTGGCGGCGCCGATCGCCGATTTGTCTCTCTGCCGTCGATCTCGTACTGTCAGTCGACGATTCTCCTCTATCGGCTGCTTCTGAACGAACTTTTCCGAGTTTTGATTTTCTTTGTATTGGTTGATTCTTTGATTTTGCCTCAAGGTAATAATTATTTGATTCTAATCTCTCTATCGCATTTTCTCTATTGAATTGTAGGATTTATTATGTTTTCCTTCATTTCTGGCATTGAGCTTTATTTAGTCTTCAGATTGCTCGGTTGAGACTTGATATGCTTGACGTTTTGTTTTATTAGGTCTCCCTGGTTATTTTATTCTTGCTTCTTGGTCTTTCTGGTCTTAG

mRNA sequence

ATGGGGAGTGGAGGCGAGAAAGCGAAGGTGCTACTGTCATTTCTGAATTCCTTGGATTCGATTGCTTTGCTTCTGAGAGCAGCTCCGAATCAGGGAGATAGAAAGAGGGTCTCAGTTCTAATTCCTGAAGAAATACTTGAGGCTGTAGTTTGTTTCAAAGCTACAAAGCTTCACCACGCATTTCAGGATTTGGATATCCGTTATTGGCTGCCTCTGTTGTGCTACAGACCCACCACCATCAACAGCCTGCCAGCGCGCTCTCCCTCTCTCTCTCTGTCTCGCTCGCCTTCGTCTCTCCATCCTCATCTTTTTCTCTACTTTTCCGACGGTCCGCCGAGGCATTTTGGCGGCGCCGATCGCCGATTTGTCTCTCTGCCGTCGATCTCGTACTGTCAGTCGACGATTCTCCTCTATCGGCTGCTTCTGAACGAACTTTTCCGAGTTTTGATTTTCTTTGTATTGGTTGATTCTTTGATTTTGCCTCAAGGTCTCCCTGGTTATTTTATTCTTGCTTCTTGGTCTTTCTGGTCTTAG

Coding sequence (CDS)

ATGGGGAGTGGAGGCGAGAAAGCGAAGGTGCTACTGTCATTTCTGAATTCCTTGGATTCGATTGCTTTGCTTCTGAGAGCAGCTCCGAATCAGGGAGATAGAAAGAGGGTCTCAGTTCTAATTCCTGAAGAAATACTTGAGGCTGTAGTTTGTTTCAAAGCTACAAAGCTTCACCACGCATTTCAGGATTTGGATATCCGTTATTGGCTGCCTCTGTTGTGCTACAGACCCACCACCATCAACAGCCTGCCAGCGCGCTCTCCCTCTCTCTCTCTGTCTCGCTCGCCTTCGTCTCTCCATCCTCATCTTTTTCTCTACTTTTCCGACGGTCCGCCGAGGCATTTTGGCGGCGCCGATCGCCGATTTGTCTCTCTGCCGTCGATCTCGTACTGTCAGTCGACGATTCTCCTCTATCGGCTGCTTCTGAACGAACTTTTCCGAGTTTTGATTTTCTTTGTATTGGTTGATTCTTTGATTTTGCCTCAAGGTCTCCCTGGTTATTTTATTCTTGCTTCTTGGTCTTTCTGGTCTTAG

Protein sequence

MGSGGEKAKVLLSFLNSLDSIALLLRAAPNQGDRKRVSVLIPEEILEAVVCFKATKLHHAFQDLDIRYWLPLLCYRPTTINSLPARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNELFRVLIFFVLVDSLILPQGLPGYFILASWSFWS

Homology

[Close]

BLAST of Carg08684 vs. NCBI nr
Match: KAG7024160.1 (hypothetical protein SDJN02_12973, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MGSGGEKAKVLLSFLNSLDSIALLLRAAPNQGDRKRVSVLIPEEILEAVVCFKATKLHHA 60
           MGSGGEKAKVLLSFLNSLDSIALLLRAAPNQGDRKRVSVLIPEEILEAVVCFKATKLHHA
Sbjct: 1   MGSGGEKAKVLLSFLNSLDSIALLLRAAPNQGDRKRVSVLIPEEILEAVVCFKATKLHHA 60

Query: 61  FQDLDIRYWLPLLCYRPTTINSLPARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADR 120
           FQDLDIRYWLPLLCYRPTTINSLPARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADR
Sbjct: 61  FQDLDIRYWLPLLCYRPTTINSLPARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADR 120

Query: 121 RFVSLPSISYCQSTILLYRLLLNELFRVLIFFVLVDSLILPQGLPGYFILASWSFWS 178
           RFVSLPSISYCQSTILLYRLLLNELFRVLIFFVLVDSLILPQGLPGYFILASWSFWS
Sbjct: 121 RFVSLPSISYCQSTILLYRLLLNELFRVLIFFVLVDSLILPQGLPGYFILASWSFWS 177

[Close]

BLAST of Carg08684 vs. NCBI nr
Match: KAG6591275.1 (hypothetical protein SDJN03_13621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 85  ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNE 144
           ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNE
Sbjct: 60  ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNE 119

Query: 145 LFRVLIFFVLVDSLILPQG 164
           LFRVLIFFVLVDSLILPQG
Sbjct: 120 LFRVLIFFVLVDSLILPQG 138

The following BLAST results are available for this feature:

BLAST of Carg08684 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024160.1	1.3e-93	100.00	hypothetical protein SDJN02_12973, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591275.1	2.3e-34	100.00	hypothetical protein SDJN03_13621, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg08684 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08684 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08684 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08684-RA	Carg08684-RA	mRNA