Carg08681 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08681
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr09: 474144 .. 474365 (-)
RNA-Seq Expression	Carg08681
Synteny	Carg08681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCTTTCATCGAATCCGTAAGATACTCGTTCGCTTTGTGTTCTCACTCCCGTCTCGTGTGTCGTCGAGACAAAGAACAACCTACGACAAGTTGTATGATCCCCCGAAAACGTCATGCAGCTCCTATTACTCTTCGCACTCCCACTACGATGAGGCCATTGCTGATTGTATTGAGTTCTTCAACAAATCGTCCCAAGATCCAAACACTTTGGTATGA

mRNA sequence

ATGAAGCTCTTTCATCGAATCCGTAAGATACTCGTTCGCTTTGTGTTCTCACTCCCGTCTCGTGTGTCGTCGAGACAAAGAACAACCTACGACAAGTTGTATGATCCCCCGAAAACGTCATGCAGCTCCTATTACTCTTCGCACTCCCACTACGATGAGGCCATTGCTGATTGTATTGAGTTCTTCAACAAATCGTCCCAAGATCCAAACACTTTGGTATGA

Coding sequence (CDS)

ATGAAGCTCTTTCATCGAATCCGTAAGATACTCGTTCGCTTTGTGTTCTCACTCCCGTCTCGTGTGTCGTCGAGACAAAGAACAACCTACGACAAGTTGTATGATCCCCCGAAAACGTCATGCAGCTCCTATTACTCTTCGCACTCCCACTACGATGAGGCCATTGCTGATTGTATTGAGTTCTTCAACAAATCGTCCCAAGATCCAAACACTTTGGTATGA

Protein sequence

MKLFHRIRKILVRFVFSLPSRVSSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDPNTLV

Homology

[Close]

BLAST of Carg08681 vs. NCBI nr
Match: KAG7024157.1 (hypothetical protein SDJN02_12970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MKLFHRIRKILVRFVFSLPSRVSSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
          MKLFHRIRKILVRFVFSLPSRVSSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE
Sbjct: 1  MKLFHRIRKILVRFVFSLPSRVSSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60

Query: 61 FFNKSSQDPNTLV 74
          FFNKSSQDPNTLV
Sbjct: 61 FFNKSSQDPNTLV 73

[Close]

BLAST of Carg08681 vs. NCBI nr
Match: KGN60030.1 (hypothetical protein Csa_001336 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 3.4e-24
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MKLFHRIRKILVRFVFSLPSRV--SSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADC 60
          MKLF RIRK+LVRFVFS+PSRV  SSR+RT+YDK +DPPKTSCSSYYSSHSHYDEAIADC
Sbjct: 29 MKLFQRIRKMLVRFVFSIPSRVSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADC 88

Query: 61 IEFFNKSSQD 69
          IEFFNKSSQD
Sbjct: 89 IEFFNKSSQD 98

[Close]

BLAST of Carg08681 vs. NCBI nr
Match: KYP64765.1 (hypothetical protein KK1_019371 [Cajanus cajan])

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-18
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MKLFHRIRKILVRFVFSLPSRVSSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
          MKLF R RKIL+RFVFS+PSR SS  R      ++PPKTSCSSYYSS+SHY+EAIADCIE
Sbjct: 1  MKLFQRFRKILMRFVFSVPSRRSSDSRHKVSDRFEPPKTSCSSYYSSYSHYNEAIADCIE 60

Query: 61 FFNKSSQD 69
          FFNKS+QD
Sbjct: 61 FFNKSAQD 68

[Close]

BLAST of Carg08681 vs. NCBI nr
Match: XP_020218596.2 (uncharacterized protein LOC109801863 [Cajanus cajan])

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-18
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MKLFHRIRKILVRFVFSLPSRVSSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
           MKLF R RKIL+RFVFS+PSR SS  R      ++PPKTSCSSYYSS+SHY+EAIADCIE
Sbjct: 52  MKLFQRFRKILMRFVFSVPSRRSSDSRHKVSDRFEPPKTSCSSYYSSYSHYNEAIADCIE 111

Query: 61  FFNKSSQD 69
           FFNKS+QD
Sbjct: 112 FFNKSAQD 119

[Close]

BLAST of Carg08681 vs. NCBI nr
Match: KAF3446772.1 (hypothetical protein FNV43_RR11952 [Rhamnella rubrinervis])

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-17
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 1  MKLFHRIRKILVRFVFSLPSRVSSRQRTT---------YDKLYDPPKTSCSSYYSSHSHY 60
          MKLF+R RK+L+R +F+LPSR SS    T          D+ +DPPKTSCSSYYSSHSHY
Sbjct: 1  MKLFNRFRKLLMRLIFALPSRGSSSSSATPTMTPRQRNCDRSFDPPKTSCSSYYSSHSHY 60

Query: 61 DEAIADCIEFFNKSSQD 69
          +EAIADCIEFFNKSSQD
Sbjct: 61 NEAIADCIEFFNKSSQD 77

[Close]

BLAST of Carg08681 vs. ExPASy TrEMBL
Match: A0A0A0LDK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872120 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MKLFHRIRKILVRFVFSLPSRV--SSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADC 60
          MKLF RIRK+LVRFVFS+PSRV  SSR+RT+YDK +DPPKTSCSSYYSSHSHYDEAIADC
Sbjct: 29 MKLFQRIRKMLVRFVFSIPSRVSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADC 88

Query: 61 IEFFNKSSQD 69
          IEFFNKSSQD
Sbjct: 89 IEFFNKSSQD 98

[Close]

BLAST of Carg08681 vs. ExPASy TrEMBL
Match: A0A151TCL3 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_019371 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-18
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MKLFHRIRKILVRFVFSLPSRVSSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
          MKLF R RKIL+RFVFS+PSR SS  R      ++PPKTSCSSYYSS+SHY+EAIADCIE
Sbjct: 1  MKLFQRFRKILMRFVFSVPSRRSSDSRHKVSDRFEPPKTSCSSYYSSYSHYNEAIADCIE 60

Query: 61 FFNKSSQD 69
          FFNKS+QD
Sbjct: 61 FFNKSAQD 68

[Close]

BLAST of Carg08681 vs. ExPASy TrEMBL
Match: A0A371F207 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_48306 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1   MKLFHRIRKILVRFVFSLPSRVSSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
           MKLF R RKIL+R VFS+PSR SS  R      ++PPKTSCSSYYSS+SHY+EAIADCIE
Sbjct: 40  MKLFQRFRKILMRLVFSVPSRRSSDSRHKVSDRFEPPKTSCSSYYSSYSHYNEAIADCIE 99

Query: 61  FFNKSSQD 69
           FFNKS+QD
Sbjct: 100 FFNKSAQD 107

[Close]

BLAST of Carg08681 vs. ExPASy TrEMBL
Match: A0A6A4PF73 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0369841 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.4e-17
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MKLFHRIRKILVRFVFSLPSRVS-----SRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAI 60
           MK+FHR RK+L+R VF++PS  S     SRQR ++D+ ++PPKTSCSSYYSS+SHY+EAI
Sbjct: 81  MKIFHRFRKVLMRLVFTIPSHRSSSSDHSRQRNSHDR-FEPPKTSCSSYYSSYSHYNEAI 140

Query: 61  ADCIEFFNKSSQD 69
           +DCIEFFNKS+QD
Sbjct: 141 SDCIEFFNKSAQD 152

[Close]

BLAST of Carg08681 vs. ExPASy TrEMBL
Match: A0A6A5NSA5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045654 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.4e-17
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MKLFHRIRKILVRFVFSLPSRVS-----SRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAI 60
           MK+FHR RK+L+R VF++PS  S     SRQR ++D+ ++PPKTSCSSYYSS+SHY+EAI
Sbjct: 55  MKIFHRFRKVLMRLVFTIPSHRSSSSDHSRQRNSHDR-FEPPKTSCSSYYSSYSHYNEAI 114

Query: 61  ADCIEFFNKSSQD 69
           +DCIEFFNKS+QD
Sbjct: 115 SDCIEFFNKSAQD 126

[Close]

BLAST of Carg08681 vs. TAIR 10
Match: AT1G75717.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-13
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MKLFHRIRKILVRFV-FSLPS----RVSSRQRTTYDKLYDPPKTSC-SSYYSSHSHYDEA 60
          MKLFH++ KIL+R + F+L S    +  +  R+   + ++PPK SC SSYYSSH HY EA
Sbjct: 1  MKLFHKLGKILMRLIDFTLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHYSEA 60

Query: 61 IADCIEFFNKSS 67
          IADCIEFFNKSS
Sbjct: 61 IADCIEFFNKSS 72

The following BLAST results are available for this feature:

BLAST of Carg08681 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024157.1	2.0e-32	100.00	hypothetical protein SDJN02_12970, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN60030.1	3.4e-24	87.14	hypothetical protein Csa_001336 [Cucumis sativus]	[more]
KYP64765.1	6.2e-18	73.53	hypothetical protein KK1_019371 [Cajanus cajan]	[more]
XP_020218596.2	6.2e-18	73.53	uncharacterized protein LOC109801863 [Cajanus cajan]	[more]
KAF3446772.1	1.8e-17	66.23	hypothetical protein FNV43_RR11952 [Rhamnella rubrinervis]	[more]

BLAST of Carg08681 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDK4	1.7e-24	87.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872120 PE=4 SV=1	[more]
A0A151TCL3	3.0e-18	73.53	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_019371 PE=4 SV=1	[more]
A0A371F207	1.5e-17	72.06	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_48306 P...	[more]
A0A6A4PF73	4.4e-17	65.75	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0369841 PE=4 SV=1	[more]
A0A6A5NSA5	4.4e-17	65.75	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045654 PE=4 SV=1	[more]

BLAST of Carg08681 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75717.1	4.9e-13	56.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 1..68
None	No IPR available	PANTHER	PTHR35111:SF5	F10A5.9	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08681-RA	Carg08681-RA	mRNA