Carg08678 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08678
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	AP complex subunit sigma
Location	Carg_Chr09: 467041 .. 468112 (-)
RNA-Seq Expression	Carg08678
Synteny	Carg08678

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCATCTCGTTTTTATGTAAGCTCTAGCTTATTGCAATCTCCACCGCTTTTGCAGTTCCGAACACACAAGGTCATCTACAGACGATATGCAGGATTGTTTTTCTCCCTTTGTGTGGACATAACAGACAACGAGTTGGCCTATCTTGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTTTGTTCTTCATTTTCTTACTCTTGCTTCCACCATATTGTTTACCAATGTAGGTTCTGTATATCTGTTTTGAAAGACTGGTCTTGCAACCCTCCTTTCACTTGTATGGATATCATGTGATGTTTGTTTATCTATTCTATTTACCAAGTAATTAGCTATACCGGTTGTCGTCAATTTCTTAATTGAAGAACAATTTATCTTTCCCACTACCTGATGCATTTGCTGCATTCTCTGTTTGTGAGGCTCCAATTCAAATTCTTTGTGAACAAATGTTCCATCTTACTCTATTCAGTTTCTTATTTTCAACAATGGCAATCAAATTCCTTGCATATTTTCTCTTTTGCTTTAGTTGATGACGATTCTTGCATATATATTTGCCTCCTTTCTAGTTGTTAGTTGTAAGTTTGAAGATTCGTTATTTCAGATTTGTTATTGTAATTGTTGTGTTGAATCTGCTACCAAATTGATCCCCATTTTTATGCTGAATCTGATGAAGGTCTATCTGATACTCGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGGTAAAGTATTGTCTGCTTATTCTTAGTAATTGTGATTTTCCCGTTACCTGACTGTCAAAACACCTGCCGATACAATCGTCATAGAGTTGTAGATGTTGTCCATGCCTTGCCATGAAGCCACATCATGAGCTGGAGTATCAGTTTTCAAAGAATATTATGTTCTTAGTAACTTATTTATACGGATTTTATTTGCCTAAAATCTCACGTCTAAATTACTTTTTTCCATCAAAAAACTTTCAGGCGATTATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGA

mRNA sequence

ATGCTTTCATCTCGTTTTTATGTAAGCTCTAGCTTATTGCAATCTCCACCGCTTTTGCAGTTCCGAACACACAAGGTCATCTACAGACGATATGCAGGATTGTTTTTCTCCCTTTGTGTGGACATAACAGACAACGAGTTGGCCTATCTTGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTCTATCTGATACTCGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGGCGATTATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGA

Coding sequence (CDS)

ATGCTTTCATCTCGTTTTTATGTAAGCTCTAGCTTATTGCAATCTCCACCGCTTTTGCAGTTCCGAACACACAAGGTCATCTACAGACGATATGCAGGATTGTTTTTCTCCCTTTGTGTGGACATAACAGACAACGAGTTGGCCTATCTTGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTCTATCTGATACTCGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGGCGATTATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGA

Protein sequence

MLSSRFYVSSSLLQSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

Homology

[Close]

BLAST of Carg08678 vs. NCBI nr
Match: KAG7024154.1 (AP-2 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 4.1e-53
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MLSSRFYVSSSLLQSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEIL 60
           MLSSRFYVSSSLLQSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEIL
Sbjct: 1   MLSSRFYVSSSLLQSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEIL 60

Query: 61  DHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           DHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 61  DHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 111

[Close]

BLAST of Carg08678 vs. NCBI nr
Match: XP_015969839.1 (AP-2 complex subunit sigma isoform X3 [Arachis duranensis] >XP_025604905.1 AP-2 complex subunit sigma isoform X3 [Arachis hypogaea])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 95/110 (86.36%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 3   SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 62
           S+  +++S L+++P  L+  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD
Sbjct: 12  SNTRFIASLLIETPNTLISLRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 71

Query: 63  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 72  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 121

[Close]

BLAST of Carg08678 vs. NCBI nr
Match: XP_016204798.1 (AP-2 complex subunit sigma isoform X3 [Arachis ipaensis] >XP_025659368.1 AP-2 complex subunit sigma isoform X3 [Arachis hypogaea])

HSP 1 Score: 185.7 bits (470), Expect = 2.2e-43
Identity = 95/110 (86.36%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 3   SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 62
           S+  +++S L+++P  L   RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD
Sbjct: 12  SNTRFIASLLIETPNTLTSLRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 71

Query: 63  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 72  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 121

[Close]

BLAST of Carg08678 vs. NCBI nr
Match: XP_012449814.1 (PREDICTED: AP-2 complex subunit sigma isoform X1 [Gossypium raimondii] >XP_016726662.2 AP-2 complex subunit sigma [Gossypium hirsutum] >XP_016729636.1 AP-2 complex subunit sigma isoform X1 [Gossypium hirsutum] >XP_017613264.1 PREDICTED: AP-2 complex subunit sigma [Gossypium arboreum] >KAB2023240.1 hypothetical protein ES319_D06G004300v1 [Gossypium barbadense] >KAG8492133.1 hypothetical protein CXB51_015685 [Gossypium anomalum] >TYG63146.1 hypothetical protein ES288_D06G005100v1 [Gossypium darwinii] >TYH64716.1 hypothetical protein ES332_D06G006000v1 [Gossypium tomentosum] >TYI75443.1 hypothetical protein E1A91_D06G004800v1 [Gossypium mustelinum])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Carg08678 vs. NCBI nr
Match: XP_004291364.1 (PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 104 VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 163

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 164 VYLILDEFILAGELQETSKKAIIERMGELEKLE 196

[Close]

BLAST of Carg08678 vs. ExPASy Swiss-Prot
Match: Q84WL9 (AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-42
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSK+AIIERM ELEKL+
Sbjct: 110 VYLILDEFILAGELQETSKRAIIERMSELEKLQ 142

[Close]

BLAST of Carg08678 vs. ExPASy Swiss-Prot
Match: O50016 (AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 9.5e-37
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  V--YLILDEFILAGELQETSKK 99
           V  YLILDEFILAGELQETSK+
Sbjct: 110 VYRYLILDEFILAGELQETSKR 131

[Close]

BLAST of Carg08678 vs. ExPASy Swiss-Prot
Match: Q7SAQ1 (AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=aps-2 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-32
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FR HKV+YRRYAGLFF  CVD  DNELAYLE IH FVE+LD FF NVCELDLVFNF+K
Sbjct: 51  VEFRNHKVVYRRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYK 110

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VY ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct: 111 VYAILDEVFLAGEIEETSKQVVLTRLEHLDKLE 143

[Close]

BLAST of Carg08678 vs. ExPASy Swiss-Prot
Match: Q4WS49 (AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=aps2 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-31
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 22  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYL 81
           R+ K++YRRYAGLFF +CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY 
Sbjct: 56  RSTKIVYRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYA 115

Query: 82  ILDEFILAGELQETSKKAIIERMGELEKLE 112
           ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct: 116 ILDEVFLAGEIEETSKQVVLTRLEHLDKLE 145

[Close]

BLAST of Carg08678 vs. ExPASy Swiss-Prot
Match: Q5BFF8 (AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=aps2 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 22  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYL 81
           R+ K++YRRYAGLFF  CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY 
Sbjct: 56  RSTKIVYRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYA 115

Query: 82  ILDEFILAGELQETSKKAIIERMGELEKLE 112
           ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct: 116 ILDEVFLAGEIEETSKQVVLTRLEHLDKLE 145

[Close]

BLAST of Carg08678 vs. ExPASy TrEMBL
Match: A0A6P4DNT9 (AP-2 complex subunit sigma isoform X3 OS=Arachis duranensis OX=130453 GN=LOC107493253 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.9e-44
Identity = 95/110 (86.36%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 3   SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 62
           S+  +++S L+++P  L+  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD
Sbjct: 12  SNTRFIASLLIETPNTLISLRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILD 71

Query: 63  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 72  HFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 121

[Close]

BLAST of Carg08678 vs. ExPASy TrEMBL
Match: A0A2P2MI97 (AP complex subunit sigma OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           LQFRTHK+IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 4   LQFRTHKIIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 63

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 64  VYLILDEFILAGELQETSKKAIIERMGELEKLE 96

[Close]

BLAST of Carg08678 vs. ExPASy TrEMBL
Match: M5XZ78 (AP complex subunit sigma OS=Prunus persica OX=3760 GN=PRUPE_1G365900 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.4e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Carg08678 vs. ExPASy TrEMBL
Match: A0A5D2C5N0 (AP complex subunit sigma OS=Gossypium darwinii OX=34276 GN=ES288_A06G005900v1 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.4e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Carg08678 vs. ExPASy TrEMBL
Match: A0A0B0NTC3 (AP complex subunit sigma OS=Gossypium arboreum OX=29729 GN=LOC108458396 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.4e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 110 VYLILDEFILAGELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Carg08678 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 173.7 bits (439), Expect = 8.2e-44
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKLE 112
           VYLILDEFILAGELQETSK+AIIERM ELEKL+
Sbjct: 110 VYLILDEFILAGELQETSKRAIIERMSELEKLQ 142

[Close]

BLAST of Carg08678 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK
Sbjct: 50  IEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKL 111
            Y ILDE ++AGELQE+SKK +   +   ++L
Sbjct: 110 AYYILDELLIAGELQESSKKTVARIISAQDQL 141

[Close]

BLAST of Carg08678 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-25
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 19  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 78
           +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK
Sbjct: 50  VEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

Query: 79  VYLILDEFILAGELQETSKKAIIERMGELEKL 111
            Y ILDE ++AGELQE+SKK +   +   ++L
Sbjct: 110 AYYILDELLIAGELQESSKKTVARIISAQDQL 141

[Close]

BLAST of Carg08678 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 7.7e-18
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 14  QSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLV 73
           Q    ++ R +K++YRRYA LFF + VD  +NELA LE IHL VE +D  F NVCELD++
Sbjct: 46  QQCSFVEHRNYKIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIM 105

Query: 74  FNFHKVYLILDEFILAGELQETSKKAIIERMGELEK 110
           F+  K + +L+E ++ G + ETSK  I+  +  ++K
Sbjct: 106 FHLEKAHFMLEEMVMNGCIVETSKANILSPIQLMDK 141

[Close]

BLAST of Carg08678 vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-17
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 25  KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILD 84
           +++Y+ YA L+F L  D ++NELA L+ I + VE LD  FSNVCELD+VFN+ K++ +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 85  EFILAGELQETSKKAIIERMGELEKLE 112
           E +  G++ ETS   +++ + E+ KLE
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLE 147

The following BLAST results are available for this feature:

BLAST of Carg08678 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024154.1	4.1e-53	100.00	AP-2 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_015969839.1	1.0e-43	86.36	AP-2 complex subunit sigma isoform X3 [Arachis duranensis] >XP_025604905.1 AP-2 ...	[more]
XP_016204798.1	2.2e-43	86.36	AP-2 complex subunit sigma isoform X3 [Arachis ipaensis] >XP_025659368.1 AP-2 co...	[more]
XP_012449814.1	1.1e-42	97.85	PREDICTED: AP-2 complex subunit sigma isoform X1 [Gossypium raimondii] >XP_01672...	[more]
XP_004291364.1	1.1e-42	97.85	PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]	[more]

BLAST of Carg08678 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WL9	1.2e-42	92.47	AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1	[more]
O50016	9.5e-37	92.68	AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1	[more]
Q7SAQ1	4.1e-32	69.89	AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A ...	[more]
Q4WS49	5.9e-31	70.00	AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293...	[more]
Q5BFF8	1.0e-30	70.00	AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /...	[more]

BLAST of Carg08678 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P4DNT9	4.9e-44	86.36	AP-2 complex subunit sigma isoform X3 OS=Arachis duranensis OX=130453 GN=LOC1074...	[more]
A0A2P2MI97	1.4e-43	98.92	AP complex subunit sigma OS=Rhizophora mucronata OX=61149 PE=3 SV=1	[more]
M5XZ78	5.4e-43	97.85	AP complex subunit sigma OS=Prunus persica OX=3760 GN=PRUPE_1G365900 PE=3 SV=1	[more]
A0A5D2C5N0	5.4e-43	97.85	AP complex subunit sigma OS=Gossypium darwinii OX=34276 GN=ES288_A06G005900v1 PE...	[more]
A0A0B0NTC3	5.4e-43	97.85	AP complex subunit sigma OS=Gossypium arboreum OX=29729 GN=LOC108458396 PE=3 SV=...	[more]

BLAST of Carg08678 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47830.1	8.2e-44	92.47	SNARE-like superfamily protein	[more]
AT2G17380.1	1.7e-25	55.43	associated protein 19	[more]
AT4G35410.2	2.9e-25	55.43	Clathrin adaptor complex small chain family protein	[more]
AT2G19790.1	7.7e-18	44.79	SNARE-like superfamily protein	[more]
AT3G50860.1	2.9e-17	45.98	Clathrin adaptor complex small chain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 6..111 e-value: 3.5E-43 score: 145.0
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 19..111
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 19..110 e-value: 3.7E-36 score: 124.2
None	No IPR available	GENE3D	3.30.450.60		coord: 4..111 e-value: 3.0E-40 score: 139.6
None	No IPR available	PANTHER	PTHR11753:SF44	AP-2 COMPLEX SUBUNIT SIGMA	coord: 19..111
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 15..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08678-RA	Carg08678-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046835	carbohydrate phosphorylation
biological_process	GO:0001678	cellular glucose homeostasis
biological_process	GO:0072583	clathrin-dependent endocytosis
biological_process	GO:0051156	glucose 6-phosphate metabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0019318	hexose metabolic process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030122	AP-2 adaptor complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0035615	clathrin adaptor activity
molecular_function	GO:0004340	glucokinase activity
molecular_function	GO:0005536	glucose binding