Carg08677 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08677
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	gibberellin-regulated protein 1-like
Location	Carg_Chr09: 466127 .. 466728 (+)
RNA-Seq Expression	Carg08677
Synteny	Carg08677

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGACCCCATCTCAACCAAAAAATATATTTACCTAACTTCTTAGATTTCTTCACTGTATTCCCTTTCCACAACCCCCTATAAACAGACACCTCTTGCATAACCAATACCCCATCCAGATTTCTAATGGCAGCAACTAAAGGTCTTGTGTTTGCTATGCTTCTTATTGCTTTTGCTTTTGTGCTCCTTATGGAATCAGCCCAAATGGTAATCCTTCTTCCATTTTATTTCTCTGTTCATTTCTGATACTCTCAACTTTGTGGCCTTATTACCTCACTGTATTGTGTCCTTTCAGGTTATCACAACTCAGGTTGATAGCCCTCTTCCTGGCGAGATAGGTAACAGAGAGATTTGAGCACCTGCACCCACATTGTTATGTTAATGCTTCTTGCTTCCTGACCAATACCTGAATCTATTGCAGATTGTGGAGAATCTTGTGATGCGAGATGCCAATTATCGTCGAGGCAAAAGATCTGCAAGAGGGCATGTGGAACCTGCTGCGCTCGCTGTCAATGCGTTCCACCAGGCACTTCAGGCAACTATGATGTTTGTCCCTGCTATGCTAACATGACTACACATGGTGGCAGGCACAAGTGTCCCTAG

mRNA sequence

CAAGACCCCATCTCAACCAAAAAATATATTTACCTAACTTCTTAGATTTCTTCACTGTATTCCCTTTCCACAACCCCCTATAAACAGACACCTCTTGCATAACCAATACCCCATCCAGATTTCTAATGGCAGCAACTAAAGGTCTTGTGTTTGCTATGCTTCTTATTGCTTTTGCTTTTGTGCTCCTTATGGAATCAGCCCAAATGGTTATCACAACTCAGGTTGATAGCCCTCTTCCTGGCGAGATAGATTGTGGAGAATCTTGTGATGCGAGATGCCAATTATCGTCGAGGCAAAAGATCTGCAAGAGGGCATGTGGAACCTGCTGCGCTCGCTGTCAATGCGTTCCACCAGGCACTTCAGGCAACTATGATGTTTGTCCCTGCTATGCTAACATGACTACACATGGTGGCAGGCACAAGTGTCCCTAG

Coding sequence (CDS)

ATGGCAGCAACTAAAGGTCTTGTGTTTGCTATGCTTCTTATTGCTTTTGCTTTTGTGCTCCTTATGGAATCAGCCCAAATGGTTATCACAACTCAGGTTGATAGCCCTCTTCCTGGCGAGATAGATTGTGGAGAATCTTGTGATGCGAGATGCCAATTATCGTCGAGGCAAAAGATCTGCAAGAGGGCATGTGGAACCTGCTGCGCTCGCTGTCAATGCGTTCCACCAGGCACTTCAGGCAACTATGATGTTTGTCCCTGCTATGCTAACATGACTACACATGGTGGCAGGCACAAGTGTCCCTAG

Protein sequence

MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKICKRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

Homology

[Close]

BLAST of Carg08677 vs. NCBI nr
Match: KAG6591269.1 (Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024153.1 Snakin-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.3 bits (534), Expect = 7.7e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC
Sbjct: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Sbjct: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 101

[Close]

BLAST of Carg08677 vs. NCBI nr
Match: XP_023535343.1 (gibberellin-regulated protein 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGLVFAMLLIAFAFVLL+ESAQM ITTQVDSPLPGEIDCGE+CDARCQLSSRQKIC
Sbjct: 1   MAATKGLVFAMLLIAFAFVLLVESAQMAITTQVDSPLPGEIDCGEACDARCQLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Sbjct: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 101

[Close]

BLAST of Carg08677 vs. NCBI nr
Match: XP_022975660.1 (snakin-2-like [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 5.5e-49
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGLVFAMLLI+FAFVLLMESAQMVITTQVDSPLP EIDCGE CDARCQLSSRQKIC
Sbjct: 1   MAATKGLVFAMLLISFAFVLLMESAQMVITTQVDSPLPDEIDCGEVCDARCQLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Sbjct: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 101

[Close]

BLAST of Carg08677 vs. NCBI nr
Match: XP_022937106.1 (gibberellin-regulated protein 1-like [Cucurbita moschata])

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-48
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGLVFAMLLIAFAFV L ESAQMV TTQVDSPLPGEIDCGE+CDARCQLSSRQKIC
Sbjct: 1   MAATKGLVFAMLLIAFAFVPLTESAQMVSTTQVDSPLPGEIDCGEACDARCQLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Sbjct: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 101

[Close]

BLAST of Carg08677 vs. NCBI nr
Match: XP_008466485.1 (PREDICTED: gibberellin-regulated protein 1-like [Cucumis melo] >KAA0063283.1 gibberellin-regulated protein 1-like [Cucumis melo var. makuwa] >TYK31492.1 gibberellin-regulated protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 190.3 bits (482), Expect = 8.3e-45
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGLVF MLLIAFA +LLMES QM+ITTQVD+PLP EIDCG++CDARC+LSSRQKIC
Sbjct: 1   MAATKGLVFVMLLIAFA-MLLMESGQMIITTQVDNPLPQEIDCGKACDARCRLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Sbjct: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 100

[Close]

BLAST of Carg08677 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-25
Identity = 61/108 (56.48%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGE-------IDCGESCDARCQL 60
           MA +K L FA LL++   +LL+E  Q + T QV S    E       IDCG +C ARC+L
Sbjct: 1   MAISKAL-FASLLLS---LLLLEQVQSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRL 60

Query: 61  SSRQKICKRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           SSR ++C RACGTCCARC CVPPGTSGN + CPCYA++TTHG + KCP
Sbjct: 61  SSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Carg08677 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-23
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MA +K L+ A LLI+   + L+++   V  +Q  +    +IDCG +C ARC+LS R ++C
Sbjct: 1   MAISKALI-ASLLISLLVLQLVQAD--VENSQKKNGYAKKIDCGSACVARCRLSRRPRLC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
            RACGTCC RC CVPPGT GNYD C CYA++TTHGGR KCP
Sbjct: 61  HRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Carg08677 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.2e-23
Identity = 52/95 (54.74%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 8   VFAMLLIAFAF-VLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKICKRACGT 67
           VF +LL +    +L+++     + T  D+P   +IDC   C  RC LSSR  +C RACGT
Sbjct: 3   VFRVLLASLLISLLVLDFVHADMVTSNDAP---KIDCNSRCQERCSLSSRPNLCHRACGT 62

Query: 68  CCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           CCARC CV PGTSGNYD CPCY ++TTHGGR KCP
Sbjct: 63  CCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Carg08677 vs. ExPASy Swiss-Prot
Match: Q8GWK5 (Gibberellin-regulated protein 9 OS=Arabidopsis thaliana OX=3702 GN=GASA9 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.6e-20
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 41  IDCGESCDARCQLSSRQKICKRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKC 100
           I+CG +C  RC  +SR+K+C RACG+CCA+CQCVPPGTSGN   CPCYA++ THG + KC
Sbjct: 59  INCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKC 118

Query: 101 P 102
           P
Sbjct: 119 P 119

[Close]

BLAST of Carg08677 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-19
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 8   VFAMLLIAFAFVLLMESAQMVITTQVDSPLPGE----IDCGESCDARCQLSSRQKICKRA 67
           VF   L+    ++ + + ++ +    D    GE    IDCG  C  RC  SSR K+C RA
Sbjct: 3   VFRSTLVLLLIIVCLTTYELHVHA-ADGAKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRA 62

Query: 68  CGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           C +CC+RC CVPPGTSGN  +CPCYA++TTHGGR KCP
Sbjct: 63  CNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Carg08677 vs. ExPASy TrEMBL
Match: A0A6J1IHC1 (snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111475493 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGLVFAMLLI+FAFVLLMESAQMVITTQVDSPLP EIDCGE CDARCQLSSRQKIC
Sbjct: 1   MAATKGLVFAMLLISFAFVLLMESAQMVITTQVDSPLPDEIDCGEVCDARCQLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Sbjct: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 101

[Close]

BLAST of Carg08677 vs. ExPASy TrEMBL
Match: A0A6J1F9F4 (gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111443509 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGLVFAMLLIAFAFV L ESAQMV TTQVDSPLPGEIDCGE+CDARCQLSSRQKIC
Sbjct: 1   MAATKGLVFAMLLIAFAFVPLTESAQMVSTTQVDSPLPGEIDCGEACDARCQLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Sbjct: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 101

[Close]

BLAST of Carg08677 vs. ExPASy TrEMBL
Match: A0A5A7V5C1 (Gibberellin-regulated protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008080 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGLVF MLLIAFA +LLMES QM+ITTQVD+PLP EIDCG++CDARC+LSSRQKIC
Sbjct: 1   MAATKGLVFVMLLIAFA-MLLMESGQMIITTQVDNPLPQEIDCGKACDARCRLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Sbjct: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 100

[Close]

BLAST of Carg08677 vs. ExPASy TrEMBL
Match: A0A1S3CRE3 (gibberellin-regulated protein 1-like OS=Cucumis melo OX=3656 GN=LOC103503877 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGLVF MLLIAFA +LLMES QM+ITTQVD+PLP EIDCG++CDARC+LSSRQKIC
Sbjct: 1   MAATKGLVFVMLLIAFA-MLLMESGQMIITTQVDNPLPQEIDCGKACDARCRLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Sbjct: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 100

[Close]

BLAST of Carg08677 vs. ExPASy TrEMBL
Match: A0A0A0LGH8 (Gibberellin-regulated protein 1 OS=Cucumis sativus OX=3659 GN=Csa_3G872160 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 87/101 (86.14%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MAATKGL+F +LLIAFA +LLMES QMVITTQVD+PLP +IDCGE+CDARC+LSSRQKIC
Sbjct: 1   MAATKGLMFVLLLIAFA-MLLMESGQMVITTQVDNPLPQDIDCGEACDARCRLSSRQKIC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           +RACGTCC+RCQCVPPGTSGNYD CPCYANMTTHGGRHKCP
Sbjct: 61  ERACGTCCSRCQCVPPGTSGNYDFCPCYANMTTHGGRHKCP 100

[Close]

BLAST of Carg08677 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-24
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MA +K L+ ++L+     +L+++  Q    +Q  +    +IDCG +C ARC+LS R ++C
Sbjct: 1   MAISKALIASLLI----SLLVLQLVQADENSQKKNGYAKKIDCGSACVARCRLSRRPRLC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
            RACGTCC RC CVPPGT GNYD C CYA++TTHGGR KCP
Sbjct: 61  HRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 97

[Close]

BLAST of Carg08677 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-24
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MAATKGLVFAMLLIAFAFVLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKIC 60
           MA +K L+ A LLI+   + L+++   V  +Q  +    +IDCG +C ARC+LS R ++C
Sbjct: 1   MAISKALI-ASLLISLLVLQLVQAD--VENSQKKNGYAKKIDCGSACVARCRLSRRPRLC 60

Query: 61  KRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
            RACGTCC RC CVPPGT GNYD C CYA++TTHGGR KCP
Sbjct: 61  HRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Carg08677 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 107.5 bits (267), Expect = 6.6e-24
Identity = 52/95 (54.74%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 8   VFAMLLIAFAF-VLLMESAQMVITTQVDSPLPGEIDCGESCDARCQLSSRQKICKRACGT 67
           VF +LL +    +L+++     + T  D+P   +IDC   C  RC LSSR  +C RACGT
Sbjct: 3   VFRVLLASLLISLLVLDFVHADMVTSNDAP---KIDCNSRCQERCSLSSRPNLCHRACGT 62

Query: 68  CCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 102
           CCARC CV PGTSGNYD CPCY ++TTHGGR KCP
Sbjct: 63  CCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Carg08677 vs. TAIR 10
Match: AT1G22690.1 (Gibberellin-regulated family protein )

HSP 1 Score: 97.4 bits (241), Expect = 6.8e-21
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 41  IDCGESCDARCQLSSRQKICKRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKC 100
           I+CG +C  RC  +SR+K+C RACG+CCA+CQCVPPGTSGN   CPCYA++ THG + KC
Sbjct: 59  INCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKC 118

Query: 101 P 102
           P
Sbjct: 119 P 119

[Close]

BLAST of Carg08677 vs. TAIR 10
Match: AT1G22690.2 (Gibberellin-regulated family protein )

HSP 1 Score: 97.4 bits (241), Expect = 6.8e-21
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 41  IDCGESCDARCQLSSRQKICKRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKC 100
           I+CG +C  RC  +SR+K+C RACG+CCA+CQCVPPGTSGN   CPCYA++ THG + KC
Sbjct: 59  INCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKC 118

Query: 101 P 102
           P
Sbjct: 119 P 119

The following BLAST results are available for this feature:

BLAST of Carg08677 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591269.1	7.7e-51	100.00	Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024153.1 Snakin-2...	[more]
XP_023535343.1	1.5e-49	97.03	gibberellin-regulated protein 11-like [Cucurbita pepo subsp. pepo]	[more]
XP_022975660.1	5.5e-49	97.03	snakin-2-like [Cucurbita maxima]	[more]
XP_022937106.1	2.7e-48	96.04	gibberellin-regulated protein 1-like [Cucurbita moschata]	[more]
XP_008466485.1	8.3e-45	90.10	PREDICTED: gibberellin-regulated protein 1-like [Cucumis melo] >KAA0063283.1 gib...	[more]

BLAST of Carg08677 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	2.0e-25	56.48	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
P46689	4.2e-23	54.46	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
F4IQJ4	9.2e-23	54.74	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
Q8GWK5	9.6e-20	63.93	Gibberellin-regulated protein 9 OS=Arabidopsis thaliana OX=3702 GN=GASA9 PE=3 SV...	[more]
P46688	1.6e-19	48.98	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]

BLAST of Carg08677 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHC1	2.7e-49	97.03	snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111475493 PE=3 SV=1	[more]
A0A6J1F9F4	1.3e-48	96.04	gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114435...	[more]
A0A5A7V5C1	4.0e-45	90.10	Gibberellin-regulated protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CRE3	4.0e-45	90.10	gibberellin-regulated protein 1-like OS=Cucumis melo OX=3656 GN=LOC103503877 PE=...	[more]
A0A0A0LGH8	2.9e-43	86.14	Gibberellin-regulated protein 1 OS=Cucumis sativus OX=3659 GN=Csa_3G872160 PE=3 ...	[more]

BLAST of Carg08677 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75750.2	1.7e-24	51.49	GAST1 protein homolog 1	[more]
AT1G75750.1	2.9e-24	54.46	GAST1 protein homolog 1	[more]
AT2G18420.1	6.6e-24	54.74	Gibberellin-regulated family protein	[more]
AT1G22690.1	6.8e-21	63.93	Gibberellin-regulated family protein	[more]
AT1G22690.2	6.8e-21	63.93	Gibberellin-regulated family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 42..101 e-value: 7.0E-23 score: 80.5
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 1..101
None	No IPR available	PANTHER	PTHR23201:SF104	GIBBERELLIN-REGULATED PROTEIN 1	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08677-RA	Carg08677-RA	mRNA