Carg08658 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08658
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLYR motif-containing protein 2
LocationCarg_Chr09: 363647 .. 364051 (+)
RNA-Seq ExpressionCarg08658
SyntenyCarg08658
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTCGCCCTTGATTTACAGGAATTTATTCTCCGGGCAAGAGTGTTGAAACTGTATAGGCAGGCTTTAAGAACTACTCGCAAAGCTCCTGTTCACGCTCGAGGTTAAGCTTTTGATTATGATCTTACATTGTTCTTTATGCATTTAATTTTTTCCCGCCTTCTCCGCATGAACCAAGCTTAAATTGGATTGGGCGTCGTGTTTAGTCGATTGCCTGTTCTGCGTGCTTAAAGTTCTGAGACTGTGTGCTTTGAAACAGAAGAACTGAGCCATACGATCAGACAAGAAATGGAAAACAACCGGAGCTGCAGTGATAGACAGAAGGTTAGATTTCTGCTCAGTGAGGGAATGGAGAGATTAAAGCGTTTAGATGAGATGTTGGATATGCAGGGCCATTCATAA

mRNA sequence

ATGGTTCTCGCCCTTGATTTACAGGAATTTATTCTCCGGGCAAGAGTGTTGAAACTGTATAGGCAGGCTTTAAGAACTACTCGCAAAGCTCCTGTTCACGCTCGAGAAGAACTGAGCCATACGATCAGACAAGAAATGGAAAACAACCGGAGCTGCAGTGATAGACAGAAGGTTAGATTTCTGCTCAGTGAGGGAATGGAGAGATTAAAGCGTTTAGATGAGATGTTGGATATGCAGGGCCATTCATAA

Coding sequence (CDS)

ATGGTTCTCGCCCTTGATTTACAGGAATTTATTCTCCGGGCAAGAGTGTTGAAACTGTATAGGCAGGCTTTAAGAACTACTCGCAAAGCTCCTGTTCACGCTCGAGAAGAACTGAGCCATACGATCAGACAAGAAATGGAAAACAACCGGAGCTGCAGTGATAGACAGAAGGTTAGATTTCTGCTCAGTGAGGGAATGGAGAGATTAAAGCGTTTAGATGAGATGTTGGATATGCAGGGCCATTCATAA

Protein sequence

MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRFLLSEGMERLKRLDEMLDMQGHS
Homology
BLAST of Carg08658 vs. NCBI nr
Match: KAG7024135.1 (LYR motif-containing protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.5 bits (389), Expect = 4.1e-34
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LLSEGMERLKRLDEMLDMQGHS 83
          LLSEGMERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGMERLKRLDEMLDMQGHS 82

BLAST of Carg08658 vs. NCBI nr
Match: KAG6591251.1 (LYR motif-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREEL HTIRQEMENNRSCSDRQKVRF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LLSEGMERLKRLDEMLDMQGHS 83
          LLSEGMERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGMERLKRLDEMLDMQGHS 82

BLAST of Carg08658 vs. NCBI nr
Match: XP_023535371.1 (uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.1 uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.0 bits (380), Expect = 4.5e-33
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREEL HTIRQEMENNRSCSDRQKVRF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LLSEGMERLKRLDEMLDMQGHS 83
          LLSEG+ERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

BLAST of Carg08658 vs. NCBI nr
Match: XP_022975831.1 (uncharacterized protein LOC111476418 [Cucurbita maxima] >XP_022975832.1 uncharacterized protein LOC111476418 [Cucurbita maxima])

HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREEL HTIRQEMENNRSCSDRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKIRF 60

Query: 61 LLSEGMERLKRLDEMLDMQGHS 83
          LLSEG ERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGRERLKRLDEMLDMQGHS 82

BLAST of Carg08658 vs. NCBI nr
Match: XP_022936861.1 (uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 uncharacterized protein LOC111443321 [Cucurbita moschata])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREEL HTIRQEMENNR CSDRQKVRF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LLSEGMERLKRLDEMLDMQGHS 83
          LLSEG+ERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

BLAST of Carg08658 vs. ExPASy Swiss-Prot
Match: Q8R033 (LYR motif-containing protein 2 OS=Mus musculus OX=10090 GN=Lyrm2 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.8e-04
Identity = 26/74 (35.14%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 4  ALDLQEFILRARVLKLYRQALRTTRKAPVHA-REELSHTIRQEMENNRSCSDRQKVRFLL 63
          AL L++F+ R +VL LYR+ LR  R+ P  + R+ L    R+E + N+S ++   +R ++
Sbjct: 10 ALTLKQFMRRQQVLLLYRKILRAIRQVPSDSDRKYLQDWAREEFKRNKSATEEDTIRMMI 69

Query: 64 SEGMERLKRLDEML 77
          ++G  +LK L+  L
Sbjct: 70 TQGNMQLKELERTL 83

BLAST of Carg08658 vs. ExPASy TrEMBL
Match: A0A6J1IFA5 (uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.9e-33
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREEL HTIRQEMENNRSCSDRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKIRF 60

Query: 61 LLSEGMERLKRLDEMLDMQGHS 83
          LLSEG ERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGRERLKRLDEMLDMQGHS 82

BLAST of Carg08658 vs. ExPASy TrEMBL
Match: A0A6J1F8N3 (uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC111443321 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.4e-33
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREEL HTIRQEMENNR CSDRQKVRF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LLSEGMERLKRLDEMLDMQGHS 83
          LLSEG+ERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

BLAST of Carg08658 vs. ExPASy TrEMBL
Match: A0A6J1CHJ1 (uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011218 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.3e-29
Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREEL HTIRQEMENNRSC+D+QKVR+
Sbjct: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60

Query: 61 LLSEGMERLKRLDEMLDMQGHS 83
          L+SEG+E LKRLDEMLDMQGHS
Sbjct: 61 LISEGIESLKRLDEMLDMQGHS 82

BLAST of Carg08658 vs. ExPASy TrEMBL
Match: A0A6J1FM54 (uncharacterized protein LOC111446466 OS=Cucurbita moschata OX=3662 GN=LOC111446466 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.8e-28
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          MVL+LDLQEFILRARVLKLYR ALRT +KAPVHAREEL HTIRQEMENNR C++RQKVRF
Sbjct: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERQKVRF 60

Query: 61 LLSEGMERLKRLDEMLDMQGH 82
          LLSEG+ERLKRL+EMLDMQG+
Sbjct: 61 LLSEGIERLKRLEEMLDMQGN 81

BLAST of Carg08658 vs. ExPASy TrEMBL
Match: W9RMC8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014312 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRF 60
          M L+ DLQ+FILRARVLKLYRQALRTTR+APVHAR EL  TIRQEMENNR+C+D+QK+RF
Sbjct: 1  MALSFDLQDFILRARVLKLYRQALRTTRRAPVHARAELRQTIRQEMENNRNCNDKQKIRF 60

Query: 61 LLSEGMERLKRLDEMLDMQGHS 83
           +SEG+ERLK L EMLDMQGHS
Sbjct: 61 FISEGLERLKDLGEMLDMQGHS 82

BLAST of Carg08658 vs. TAIR 10
Match: AT1G76065.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 114.0 bits (284), Expect = 5.7e-26
Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 2  VLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELSHTIRQEMENNRSCSDRQKVRFL 61
          ++ LDLQ FILRARVLKLYRQAL+   +APVH R EL  T+RQEME NR C+D+QK+R+L
Sbjct: 1  MVQLDLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYL 60

Query: 62 LSEGMERLKRLDEMLDMQGH 82
          +SEG+ER+K LDEMLDMQGH
Sbjct: 61 ISEGLERIKGLDEMLDMQGH 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7024135.14.1e-34100.00LYR motif-containing protein 2, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
KAG6591251.11.6e-3398.78LYR motif-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023535371.14.5e-3397.56uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.... [more]
XP_022975831.11.0e-3296.34uncharacterized protein LOC111476418 [Cucurbita maxima] >XP_022975832.1 uncharac... [more]
XP_022936861.11.3e-3296.34uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 unchar... [more]
Match NameE-valueIdentityDescription
Q8R0337.8e-0435.14LYR motif-containing protein 2 OS=Mus musculus OX=10090 GN=Lyrm2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1IFA54.9e-3396.34uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418... [more]
A0A6J1F8N36.4e-3396.34uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC1114433... [more]
A0A6J1CHJ14.3e-2985.37uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1FM542.8e-2886.42uncharacterized protein LOC111446466 OS=Cucurbita moschata OX=3662 GN=LOC1114464... [more]
W9RMC82.0e-2679.27Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014312 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G76065.15.7e-2670.00LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 15..70
e-value: 1.0E-15
score: 57.5
NoneNo IPR availablePANTHERPTHR13675LYR MOTIF-CONTAINING PROTEIN 2coord: 1..81
NoneNo IPR availablePANTHERPTHR13675:SF0LYR MOTIF-CONTAINING PROTEIN 2coord: 1..81
NoneNo IPR availableCDDcd20262Complex1_LYR_LYRM2coord: 11..72
e-value: 2.19651E-15
score: 61.783

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08658-RACarg08658-RAmRNA