Carg08605 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08605
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	AT-hook motif nuclear-localized protein
Location	Carg_Chr09: 126484 .. 127709 (+)
RNA-Seq Expression	Carg08605
Synteny	Carg08605

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTTTCCCAGAATGGGCCTAGAGCTGTTTGTATCCTTACAGCAAATGGTGCAACATCCAATGTGACTCTACGTCAACCAGCCATGTCTGCTGGAACCGTCACTTACCAGGTTTGATAATTTCTACTTCTCTTTTGAATCTTCAACGTATGCCTGCCTGGATCATAATTTCTTAGTGTCCCCATCTTCATGCCTCTAAATAGACCTTCTTCTTTCCTTTTCTTAAACCAGATGGAATTTATGTGTTATACAGGGGCTATTCGAGATTTTGTCTCTATCTGGGTCATATCTCTTCTCCGAGAATGGCGGTCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGACCGGACGGTAGAGTATTAGGTGGTGGGGTGACTGATGGGGGGCACAAGGAGTTGAGGCAAACAGCCGCCTTTTACTGCACCCCATAAACTTGCTCCCATCCGTGCTGGAATGACGGGAACTAGCAGCAGCCCGCCATCACTCGGTACTCTCAGTGAATCCTCGGGAGGGCCTGGTAGTCCATTTAATCACAGTGCTTGGATGTGAAACTCGAGGTTGCTTCGTTAACTCACTTGATTTGTTAACATGGCGGGGGCTAACGTGGAATCTGGTGTTCTGTTGTCTAATGTTACTCTAGTTCCAGTTTGAGTTGGCTTGGAAAGAACAGACGTGAAATAGTTGTGTTTTGTTTTGATAGTGATGGCATTACAAATCAAATGATGTGTTCATTTCAATTATTGCGCTACTACTTTGATGCTAAATAGTCTCAAAGAGAGAGTATTATTACAAACGGGACTTTTCTTTTTCAGCTATCTCTCGTTTGCTAACAACACATAGGGACTGCCCCTTTAACTCCTTGCTCTTTTCAACAATAAGCGCAAGGAGAAGAAGCCTAAAGCAAAAGTCTGCCAAAACCATCCCCTTGAGTTAGCAGGATCCACCTTTCTGGCTAAGAACCATGCATAAGTACCCTCGCCAACATGCAGTAGAAAGGCTATGAGAAACACCATTCTCACCACTTGAATTGACCTAAAGAAGAAAAGGCTGATGCCTTTGAAAAATGGAACAGGTCCTACGTCTGGAAGGAAAGCACCACAAAACATGATGCTCATTCCGACAACACAGAACAGCCACGCATATATTGTTGGCCCATCGAGACTCTTCCTTTTTCTCTCCTGCCAATATGAGATGGTCGCAGCCATGCCCTCCTTT

mRNA sequence

ATGTCATTTTCCCAGAATGGGCCTAGAGCTGTTTGTATCCTTACAGCAAATGGTGCAACATCCAATGTGACTCTACGTCAACCAGCCATGTCTGCTGGAACCGTCACTTACCAGGGGCTATTCGAGATTTTGTCTCTATCTGGGTCATATCTCTTCTCCGAGAATGGCGGTCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGACCGGACGGTAGAGTATTAGGTGGTGGGGTGACTGATGGGGGGCACAAGGAGTTGAGGCAAACAGCCGCCTTTTACTGCACCCCATAAACTTGCTCCCATCCGTGCTGGAATGACGGGAACTAGCAGCAGCCCGCCATCACTCGGTACTCTCAGTGAATCCTCGGGAGGGCCTGGTAGTCCATTTAATCACAGTGCTTGGATGTGAAACTCGAGGTTGCTTCGTTAACTCACTTGATTTGTTAACATGGCGGGGGCTAACGTGGAATCTGGTGTTCTGTTGTCTAATGTTACTCTAGTTCCAGTTTGAGTTGGCTTGGAAAGAACAGACGTGAAATAGTTGTGTTTTGTTTTGATAGTGATGGCATTACAAATCAAATGATGTGTTCATTTCAATTATTGCGCTACTACTTTGATGCTAAATAGTCTCAAAGAGAGAGTATTATTACAAACGGGACTTTTCTTTTTCAGCTATCTCTCGTTTGCTAACAACACATAGGGACTGCCCCTTTAACTCCTTGCTCTTTTCAACAATAAGCGCAAGGAGAAGAAGCCTAAAGCAAAAGTCTGCCAAAACCATCCCCTTGAGTTAGCAGGATCCACCTTTCTGGCTAAGAACCATGCATAAGTACCCTCGCCAACATGCAGTAGAAAGGCTATGAGAAACACCATTCTCACCACTTGAATTGACCTAAAGAAGAAAAGGCTGATGCCTTTGAAAAATGGAACAGGTCCTACGTCTGGAAGGAAAGCACCACAAAACATGATGCTCATTCCGACAACACAGAACAGCCACGCATATATTGTTGGCCCATCGAGACTCTTCCTTTTTCTCTCCTGCCAATATGAGATGGTCGCAGCCATGCCCTCCTTT

Coding sequence (CDS)

ATGTCATTTTCCCAGAATGGGCCTAGAGCTGTTTGTATCCTTACAGCAAATGGTGCAACATCCAATGTGACTCTACGTCAACCAGCCATGTCTGCTGGAACCGTCACTTACCAGGGGCTATTCGAGATTTTGTCTCTATCTGGGTCATATCTCTTCTCCGAGAATGGCGGTCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGACCGGACGGTAGAGTATTAGGTGGTGGGGTGACTGATGGGGGGCACAAGGAGTTGAGGCAAACAGCCGCCTTTTACTGCACCCCATAA

Protein sequence

MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRSRTGGLSVSLSGPDGRVLGGGVTDGGHKELRQTAAFYCTP

Homology

[Close]

BLAST of Carg08605 vs. NCBI nr
Match: KAG7024082.1 (AT-hook motif nuclear-localized protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS
Sbjct: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60

Query: 61  RTGGLSVSLSGPDGRVLGGGVTDGGHKELRQTAAFYCTP 100
           RTGGLSVSLSGPDGRVLGGGVTDGGHKELRQTAAFYCTP
Sbjct: 61  RTGGLSVSLSGPDGRVLGGGVTDGGHKELRQTAAFYCTP 99

[Close]

BLAST of Carg08605 vs. NCBI nr
Match: KAG6591197.1 (AT-hook motif nuclear-localized protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 7.4e-38
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 6   NGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRSRTGGL 65
           NGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRSRTGGL
Sbjct: 53  NGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRSRTGGL 112

Query: 66  SVSLSGPDGRVLGGGVTDGGHKELRQ 92
           SVSLSGPDGRVLGGGVTDGGHKEL Q
Sbjct: 113 SVSLSGPDGRVLGGGVTDGGHKELWQ 138

[Close]

BLAST of Carg08605 vs. NCBI nr
Match: XP_004145559.1 (AT-hook motif nuclear-localized protein 10 [Cucumis sativus] >XP_011654287.1 AT-hook motif nuclear-localized protein 10 [Cucumis sativus] >KGN55540.1 hypothetical protein Csa_012211 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35
Identity = 86/109 (78.90%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           MSFSQNGPRAVCILTANGA SNVTLRQPAMS GTVTY+G FEILSLSGSYL SENGGQRS
Sbjct: 183 MSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRS 242

Query: 61  RTGGLSVSLSGPDGRVLGGG------------------VTDGGHKELRQ 92
           RTGGLSVSLSGPDGRVLGGG                  VTDGGHKELRQ
Sbjct: 243 RTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGGHKELRQ 291

[Close]

BLAST of Carg08605 vs. NCBI nr
Match: XP_008453016.1 (PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis melo] >XP_008453017.1 PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis melo] >KAA0064668.1 AT-hook motif nuclear-localized protein 10 [Cucumis melo var. makuwa] >TYK19923.1 AT-hook motif nuclear-localized protein 10 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 2.9e-34
Identity = 85/109 (77.98%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           MSFSQNGPRAVCILTANGA SNVTLRQPAMS GTVTY+G FEILSLSGSYL SENGGQRS
Sbjct: 183 MSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRS 242

Query: 61  RTGGLSVSLSGPDGRVLGGG------------------VTDGGHKELRQ 92
           RTGGLSVSLSGPDGRVLGGG                  VTD GHKELRQ
Sbjct: 243 RTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDVGHKELRQ 291

[Close]

BLAST of Carg08605 vs. NCBI nr
Match: XP_038898092.1 (AT-hook motif nuclear-localized protein 10-like [Benincasa hispida] >XP_038898093.1 AT-hook motif nuclear-localized protein 10-like [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 84/107 (78.50%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           MSFSQNGPRAVCILTANGA SNVTLRQPAMS GTVTY+G FEILSLSGSYL SENGGQRS
Sbjct: 183 MSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRS 242

Query: 61  RTGGLSVSLSGPDGRVLGGGV------------------TDGGHKEL 90
           RTGGLSVSLSGPDGRVLGGGV                  TDGGHKEL
Sbjct: 243 RTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFITDGGHKEL 289

[Close]

BLAST of Carg08605 vs. ExPASy Swiss-Prot
Match: O22812 (AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana OX=3702 GN=AHL10 PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-26
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           M+ + NGPRAVC+L+ANGA SNVTLRQ A S GTVTY+G FEILSLSGS+   EN GQRS
Sbjct: 181 MALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRS 240

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           RTGGLSVSLS PDG VLGG V
Sbjct: 241 RTGGLSVSLSSPDGNVLGGSV 261

[Close]

BLAST of Carg08605 vs. ExPASy Swiss-Prot
Match: Q4V3E0 (AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana OX=3702 GN=AHL7 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-25
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           +SFSQ GPRA+CIL+ANG  SNVTLRQP    GT+TY+G FEILSLSGS++ +EN G + 
Sbjct: 141 ISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYEGRFEILSLSGSFMETENQGSKG 200

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           R+GG+SVSL+GPDGRV+GGGV
Sbjct: 201 RSGGMSVSLAGPDGRVVGGGV 221

[Close]

BLAST of Carg08605 vs. ExPASy Swiss-Prot
Match: Q8VYJ2 (AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana OX=3702 GN=AHL1 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-25
Identity = 54/81 (66.67%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           +SFSQ GPR++C+L+ANG  S+VTLRQP  S GT+TY+G FEILSLSGS++ +++GG RS
Sbjct: 188 ISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRS 247

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           RTGG+SVSL+ PDGRV+GGG+
Sbjct: 248 RTGGMSVSLASPDGRVVGGGL 268

[Close]

BLAST of Carg08605 vs. ExPASy Swiss-Prot
Match: Q9FHM5 (AT-hook motif nuclear-localized protein 4 OS=Arabidopsis thaliana OX=3702 GN=AHL4 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           M+FSQ G RA+CIL+ANG  SNVTLRQ   S GT+TY+G FEILSL+GS++ SE+GG RS
Sbjct: 196 MTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEGHFEILSLTGSFIPSESGGTRS 255

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           R GG+SVSL+G DGRV GGG+
Sbjct: 256 RAGGMSVSLAGQDGRVFGGGL 276

[Close]

BLAST of Carg08605 vs. ExPASy Swiss-Prot
Match: Q9SB31 (AT-hook motif nuclear-localized protein 3 OS=Arabidopsis thaliana OX=3702 GN=AHL3 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           M+FSQ G RA+CIL+ANG  SNVTLRQ   S GT+TY+G FEILSL+GS++ +++GG RS
Sbjct: 184 MTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEGRFEILSLTGSFMQNDSGGTRS 243

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           R GG+SV L+GPDGRV GGG+
Sbjct: 244 RAGGMSVCLAGPDGRVFGGGL 264

[Close]

BLAST of Carg08605 vs. ExPASy TrEMBL
Match: A0A0A0L0T7 (AT-hook motif nuclear-localized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664470 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 86/109 (78.90%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           MSFSQNGPRAVCILTANGA SNVTLRQPAMS GTVTY+G FEILSLSGSYL SENGGQRS
Sbjct: 183 MSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRS 242

Query: 61  RTGGLSVSLSGPDGRVLGGG------------------VTDGGHKELRQ 92
           RTGGLSVSLSGPDGRVLGGG                  VTDGGHKELRQ
Sbjct: 243 RTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGGHKELRQ 291

[Close]

BLAST of Carg08605 vs. ExPASy TrEMBL
Match: A0A1S3BWC6 (AT-hook motif nuclear-localized protein OS=Cucumis melo OX=3656 GN=LOC103493847 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 85/109 (77.98%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           MSFSQNGPRAVCILTANGA SNVTLRQPAMS GTVTY+G FEILSLSGSYL SENGGQRS
Sbjct: 183 MSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRS 242

Query: 61  RTGGLSVSLSGPDGRVLGGG------------------VTDGGHKELRQ 92
           RTGGLSVSLSGPDGRVLGGG                  VTD GHKELRQ
Sbjct: 243 RTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDVGHKELRQ 291

[Close]

BLAST of Carg08605 vs. ExPASy TrEMBL
Match: A0A5A7VAQ2 (AT-hook motif nuclear-localized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00350 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 85/109 (77.98%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           MSFSQNGPRAVCILTANGA SNVTLRQPAMS GTVTY+G FEILSLSGSYL SENGGQRS
Sbjct: 183 MSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRS 242

Query: 61  RTGGLSVSLSGPDGRVLGGG------------------VTDGGHKELRQ 92
           RTGGLSVSLSGPDGRVLGGG                  VTD GHKELRQ
Sbjct: 243 RTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDVGHKELRQ 291

[Close]

BLAST of Carg08605 vs. ExPASy TrEMBL
Match: A0A6J1BX81 (AT-hook motif nuclear-localized protein OS=Momordica charantia OX=3673 GN=LOC111006325 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32
Identity = 82/109 (75.23%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           MSFSQNGPRAVCILTANGA SNVTLRQPAMS GTVTY+G FEILSLSGSYL SENGGQRS
Sbjct: 39  MSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRS 98

Query: 61  RTGGLSVSLSGPDGRVLGGG------------------VTDGGHKELRQ 92
           RTGGLSVSLSGPDGRVLGGG                  V DG  KEL+Q
Sbjct: 99  RTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVADGWRKELQQ 147

[Close]

BLAST of Carg08605 vs. ExPASy TrEMBL
Match: A0A6J1FR30 (AT-hook motif nuclear-localized protein OS=Cucurbita moschata OX=3662 GN=LOC111446146 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-32
Identity = 80/109 (73.39%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           MS SQNGPRAVCIL+ANGA SNVTLRQPAMS GTVTY+G FEILSLSG YL +ENGGQRS
Sbjct: 181 MSISQNGPRAVCILSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGLYLLTENGGQRS 240

Query: 61  RTGGLSVSLSGPDGRVLGGG------------------VTDGGHKELRQ 92
           RTGGLSVSLSGPDGRVLGGG                  V DGGHKEL+Q
Sbjct: 241 RTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVNDGGHKELKQ 289

[Close]

BLAST of Carg08605 vs. TAIR 10
Match: AT2G33620.1 (AT hook motif DNA-binding family protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-27
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           M+ + NGPRAVC+L+ANGA SNVTLRQ A S GTVTY+G FEILSLSGS+   EN GQRS
Sbjct: 181 MALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRS 240

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           RTGGLSVSLS PDG VLGG V
Sbjct: 241 RTGGLSVSLSSPDGNVLGGSV 261

[Close]

BLAST of Carg08605 vs. TAIR 10
Match: AT2G33620.2 (AT hook motif DNA-binding family protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-27
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           M+ + NGPRAVC+L+ANGA SNVTLRQ A S GTVTY+G FEILSLSGS+   EN GQRS
Sbjct: 181 MALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRS 240

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           RTGGLSVSLS PDG VLGG V
Sbjct: 241 RTGGLSVSLSSPDGNVLGGSV 261

[Close]

BLAST of Carg08605 vs. TAIR 10
Match: AT2G33620.3 (AT hook motif DNA-binding family protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-27
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           M+ + NGPRAVC+L+ANGA SNVTLRQ A S GTVTY+G FEILSLSGS+   EN GQRS
Sbjct: 181 MALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRS 240

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           RTGGLSVSLS PDG VLGG V
Sbjct: 241 RTGGLSVSLSSPDGNVLGGSV 261

[Close]

BLAST of Carg08605 vs. TAIR 10
Match: AT2G33620.4 (AT hook motif DNA-binding family protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-27
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           M+ + NGPRAVC+L+ANGA SNVTLRQ A S GTVTY+G FEILSLSGS+   EN GQRS
Sbjct: 181 MALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRS 240

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           RTGGLSVSLS PDG VLGG V
Sbjct: 241 RTGGLSVSLSSPDGNVLGGSV 261

[Close]

BLAST of Carg08605 vs. TAIR 10
Match: AT4G00200.1 (AT hook motif DNA-binding family protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-26
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1   MSFSQNGPRAVCILTANGATSNVTLRQPAMSAGTVTYQGLFEILSLSGSYLFSENGGQRS 60
           +SFSQ GPRA+CIL+ANG  SNVTLRQP    GT+TY+G FEILSLSGS++ +EN G + 
Sbjct: 141 ISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYEGRFEILSLSGSFMETENQGSKG 200

Query: 61  RTGGLSVSLSGPDGRVLGGGV 82
           R+GG+SVSL+GPDGRV+GGGV
Sbjct: 201 RSGGMSVSLAGPDGRVVGGGV 221

The following BLAST results are available for this feature:

BLAST of Carg08605 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024082.1	3.0e-47	100.00	AT-hook motif nuclear-localized protein 10, partial [Cucurbita argyrosperma subs...	[more]
KAG6591197.1	7.4e-38	98.84	AT-hook motif nuclear-localized protein 10, partial [Cucurbita argyrosperma subs...	[more]
XP_004145559.1	2.6e-35	78.90	AT-hook motif nuclear-localized protein 10 [Cucumis sativus] >XP_011654287.1 AT-...	[more]
XP_008453016.1	2.9e-34	77.98	PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis melo] >XP_0084530...	[more]
XP_038898092.1	4.9e-34	78.50	AT-hook motif nuclear-localized protein 10-like [Benincasa hispida] >XP_03889809...	[more]

BLAST of Carg08605 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22812	3.0e-26	75.31	AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]
Q4V3E0	2.0e-25	69.14	AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
Q8VYJ2	5.7e-25	66.67	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
Q9FHM5	1.4e-23	67.90	AT-hook motif nuclear-localized protein 4 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
Q9SB31	1.8e-23	65.43	AT-hook motif nuclear-localized protein 3 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]

BLAST of Carg08605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0T7	1.3e-35	78.90	AT-hook motif nuclear-localized protein OS=Cucumis sativus OX=3659 GN=Csa_4G6644...	[more]
A0A1S3BWC6	1.4e-34	77.98	AT-hook motif nuclear-localized protein OS=Cucumis melo OX=3656 GN=LOC103493847 ...	[more]
A0A5A7VAQ2	1.4e-34	77.98	AT-hook motif nuclear-localized protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6J1BX81	1.0e-32	75.23	AT-hook motif nuclear-localized protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1FR30	1.7e-32	73.39	AT-hook motif nuclear-localized protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Carg08605 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33620.1	2.1e-27	75.31	AT hook motif DNA-binding family protein	[more]
AT2G33620.2	2.1e-27	75.31	AT hook motif DNA-binding family protein	[more]
AT2G33620.3	2.1e-27	75.31	AT hook motif DNA-binding family protein	[more]
AT2G33620.4	2.1e-27	75.31	AT hook motif DNA-binding family protein	[more]
AT4G00200.1	1.4e-26	69.14	AT hook motif DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005175	PPC domain	PFAM	PF03479	PCC	coord: 3..84 e-value: 2.5E-15 score: 56.8
IPR005175	PPC domain	PROSITE	PS51742	PPC	coord: 1..99 score: 27.265959
IPR005175	PPC domain	CDD	cd11378	DUF296	coord: 1..81 e-value: 7.50443E-21 score: 78.011
None	No IPR available	GENE3D	3.30.1330.80		coord: 1..93 e-value: 4.9E-18 score: 67.3
None	No IPR available	PANTHER	PTHR31500:SF57	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10	coord: 1..82
None	No IPR available	SUPERFAMILY	117856	AF0104/ALDC/Ptd012-like	coord: 4..84
IPR039605	AT-hook motif nuclear-localized protein	PANTHER	PTHR31500	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08605-RA	Carg08605-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003680	minor groove of adenine-thymine-rich DNA binding