Carg08596 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08596
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	splicing factor U2af small subunit B-like
Location	Carg_Chr09: 84063 .. 84890 (+)
RNA-Seq Expression	Carg08596
Synteny	Carg08596

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAACACTTGGCCTCAATATTTGGCACGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGATTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCAGCTGCCGCATTACAAGCGTTGCAAGGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGACTGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATCTGAGGAGGAAGCTGTTCGGTAGGCATCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAGTCTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGAGAGAAGGAAGCGTAGAGCGCCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

mRNA sequence

ATGGCTGAACACTTGGCCTCAATATTTGGCACGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGATTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCAGCTGCCGCATTACAAGCGTTGCAAGGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGACTGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATCTGAGGAGGAAGCTGTTCGGTAGGCATCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAGTCTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGAGAGAAGGAAGCGTAGAGCGCCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

Coding sequence (CDS)

ATGGCTGAACACTTGGCCTCAATATTTGGCACGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGATTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCAGCTGCCGCATTACAAGCGTTGCAAGGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGACTGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATCTGAGGAGGAAGCTGTTCGGTAGGCATCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAGTCTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGAGAGAAGGAAGCGTAGAGCGCCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ

Homology

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BLAST of Carg08596 vs. NCBI nr
Match: XP_023521110.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG6591187.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024073.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 553.1 bits (1424), Expect = 1.3e-153
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGR 240
           RRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGR
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGR 240

Query: 241 RRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 276
           RRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
Sbjct: 241 RRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 275

[Close]

BLAST of Carg08596 vs. NCBI nr
Match: XP_022936161.1 (splicing factor U2af small subunit B-like [Cucurbita moschata])

HSP 1 Score: 548.1 bits (1411), Expect = 4.3e-152
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYR--RSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDG 240
           RRKLFGRHRGYR  RSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDG
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDG 240

Query: 241 GRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 276
           GRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
Sbjct: 241 GRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 277

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BLAST of Carg08596 vs. NCBI nr
Match: XP_022142994.1 (splicing factor U2af small subunit B-like [Momordica charantia])

HSP 1 Score: 532.7 bits (1371), Expect = 1.9e-147
Identity = 265/274 (96.72%), Postives = 270/274 (98.54%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGR 240
           RRKLFGR+RGYRRSRSRSRSLSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGR
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240

Query: 241 RRHGSPRRSRSPVREGSVERRARIEQWNREREEK 275
           RRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Sbjct: 241 RRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274

[Close]

BLAST of Carg08596 vs. NCBI nr
Match: XP_022941119.1 (splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022941120.1 splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022941121.1 splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022981902.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022981903.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022981905.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >KAG7037979.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 528.5 bits (1360), Expect = 3.5e-146
Identity = 266/276 (96.38%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGG 240
           RRKLFG R RGYRRSRSRSRSLSPRNRK+ DRRERDYRDR+ RGNGRSKER DRYDRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 276
           RRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Carg08596 vs. NCBI nr
Match: XP_023525325.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023525326.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023525327.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 526.9 bits (1356), Expect = 1.0e-145
Identity = 265/276 (96.01%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGG 240
           RRKLFG R RGYRRSRSRSRSLSPRNRK+ DRRERDYRDR+ RGNGRSKER DR+DRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRFDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 276
           RRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Carg08596 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 9.3e-126
Identity = 237/281 (84.34%), Postives = 255/281 (90.75%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRH-RGYRR-SRSRSRSLSPRNRKELDR-RER-DYRDRESRGNG-RSKERHDRYD 240
           RRKLFGR+ R YRR SRSRSRS+SPR ++E  R RER D RDR+  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSVERRARIEQWNREREE 274
           RD GGRRRHGSP+RSRSP  VREGS ERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Carg08596 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.1e-123
Identity = 235/292 (80.48%), Postives = 257/292 (88.01%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRH-RGYR---RSRSRSRSLSPRNRKELDRRERDY-------RDRE--SRGNG-R 240
           RRKLFGR+ R YR   RSRSRSRS+SPRN+++ DRR+  +       RDRE    G+G R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SKERHDRYDRDGGR-RRHGSPRRSRSP--VREGSVERRARIEQWNREREEKQ 276
           S ER +R +RDG R RR  SP+R  SP   REGS ERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of Carg08596 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 3.3e-115
Identity = 225/306 (73.53%), Postives = 246/306 (80.39%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E LNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNR-----KELDRRERD-------------------- 240
           RRKL+G     RRS  RSRS SPR+R     ++  RRERD                    
Sbjct: 181 RRKLYGGRS--RRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDG 240

Query: 241 YRDRES-RGNG-----RSKERHDRYDRDGGRRRHGS-PRRSRSPVREGSVERRARIEQWN 275
           YR  +S RG G         R+DRYD DGGRRRHGS PRR+RSPVRE S ERRA+IEQWN
Sbjct: 241 YRGGDSYRGGGGGGRRGGGSRYDRYD-DGGRRRHGSPPRRARSPVRESSEERRAKIEQWN 300

[Close]

BLAST of Carg08596 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.2e-109
Identity = 212/291 (72.85%), Postives = 233/291 (80.07%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           G+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIE L+VCDN ADHMIGNVYVQFREED
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSP---RNRKELDR----RERDY--------RDRESRGNG 240
           R++LFG     RRS S  RS SP     R++ DR    R RD+         D    G+ 
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGGSHDYYRGGSR 240

Query: 241 RSKERH-DRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 276
           RS ERH   YD DG RRRH S  R+RSPVR+GS ERRA+IEQWNRERE  Q
Sbjct: 241 RSSERHRSSYDSDGSRRRHRS--RTRSPVRDGSEERRAQIEQWNREREAAQ 289

[Close]

BLAST of Carg08596 vs. ExPASy Swiss-Prot
Match: A1A4K8 (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 8.3e-66
Identity = 131/245 (53.47%), Postives = 169/245 (68.98%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIECLNVCDNLADHMIGNVYVQFREE 120
             D     +   ++QEH+++F+E+++ E+  K+GE+E +NVCDNL DH++GNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 180
           + A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGG 240
           LRR+L+GR R   RSRSRSR        E   R RD       G G  +ER  R  RD  
Sbjct: 181 LRRELYGRRRKKHRSRSRSR--------ERRSRSRDRGRGGGGGGGGGRERDRRRSRD-- 235

Query: 241 RRRHG 245
           R R G
Sbjct: 241 RERSG 235

[Close]

BLAST of Carg08596 vs. ExPASy TrEMBL
Match: A0A6J1F6R3 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111442843 PE=4 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 2.1e-152
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYR--RSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDG 240
           RRKLFGRHRGYR  RSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDG
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDG 240

Query: 241 GRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 276
           GRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
Sbjct: 241 GRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 277

[Close]

BLAST of Carg08596 vs. ExPASy TrEMBL
Match: A0A6J1CN17 (splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC111012985 PE=4 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 9.0e-148
Identity = 265/274 (96.72%), Postives = 270/274 (98.54%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGR 240
           RRKLFGR+RGYRRSRSRSRSLSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGR
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240

Query: 241 RRHGSPRRSRSPVREGSVERRARIEQWNREREEK 275
           RRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Sbjct: 241 RRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274

[Close]

BLAST of Carg08596 vs. ExPASy TrEMBL
Match: A0A6J1IV82 (splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111480904 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.7e-146
Identity = 266/276 (96.38%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGG 240
           RRKLFG R RGYRRSRSRSRSLSPRNRK+ DRRERDYRDR+ RGNGRSKER DRYDRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 276
           RRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Carg08596 vs. ExPASy TrEMBL
Match: A0A6J1FSM7 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111446512 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.7e-146
Identity = 266/276 (96.38%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGG 240
           RRKLFG R RGYRRSRSRSRSLSPRNRK+ DRRERDYRDR+ RGNGRSKER DRYDRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 276
           RRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Carg08596 vs. ExPASy TrEMBL
Match: A0A5A7VFL1 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00280 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.5e-142
Identity = 265/279 (94.98%), Postives = 267/279 (95.70%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGR 240
           RRKLFGR+RGYR SRSRSRSLSPRNRKE DRRERDYR+RE RGNGRSKERH   DRDGGR
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERH---DRDGGR 240

Query: 241 RRHGSPR--RSRSPV--REGSVERRARIEQWNREREEKQ 276
           RRHGSPR  RSRSPV  REGS ERRARIEQWNREREEKQ
Sbjct: 241 RRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Carg08596 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 451.1 bits (1159), Expect = 6.6e-127
Identity = 237/281 (84.34%), Postives = 255/281 (90.75%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRH-RGYRR-SRSRSRSLSPRNRKELDR-RER-DYRDRESRGNG-RSKERHDRYD 240
           RRKLFGR+ R YRR SRSRSRS+SPR ++E  R RER D RDR+  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSVERRARIEQWNREREE 274
           RD GGRRRHGSP+RSRSP  VREGS ERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Carg08596 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 451.1 bits (1159), Expect = 6.6e-127
Identity = 237/281 (84.34%), Postives = 255/281 (90.75%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRH-RGYRR-SRSRSRSLSPRNRKELDR-RER-DYRDRESRGNG-RSKERHDRYD 240
           RRKLFGR+ R YRR SRSRSRS+SPR ++E  R RER D RDR+  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSVERRARIEQWNREREE 274
           RD GGRRRHGSP+RSRSP  VREGS ERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Carg08596 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 444.1 bits (1141), Expect = 8.1e-125
Identity = 235/292 (80.48%), Postives = 257/292 (88.01%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRH-RGYR---RSRSRSRSLSPRNRKELDRRERDY-------RDRE--SRGNG-R 240
           RRKLFGR+ R YR   RSRSRSRS+SPRN+++ DRR+  +       RDRE    G+G R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SKERHDRYDRDGGR-RRHGSPRRSRSP--VREGSVERRARIEQWNREREEKQ 276
           S ER +R +RDG R RR  SP+R  SP   REGS ERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of Carg08596 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 335.5 bits (859), Expect = 4.0e-92
Identity = 185/242 (76.45%), Postives = 207/242 (85.54%), Query Frame = 0


Query: 51  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIG 110
           MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+CDNLADHMIG
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
           NVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHVKMIGKDLRRKLFGRH-RGYR---RSRSRSRSLSPRNRKELDRRERDY-------RDR 230
           MHVK++ ++LRRKLFGR+ R YR   RSRSRSRS+SPRN+++ DRR+  +       RDR
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180

Query: 231 E--SRGNG-RSKERHDRYDRDGGR-RRHGSPRRSRSP--VREGSVERRARIEQWNREREE 276
           E    G+G RS ER +R +RDG R RR  SP+R  SP   REGS ERRARIEQWNREREE
Sbjct: 181 EFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREE 240

[Close]

BLAST of Carg08596 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-29
Identity = 97/292 (33.22%), Postives = 146/292 (50.00%), Query Frame = 0


Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREEDQAAAALQA 128
               + +  +E+FYED++ E  K+GE+    VC N + H+ GNVYV +R  + A  A Q+
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR--- 188
           + GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D     
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWAD 416

Query: 189 -------------RKLFG----RHRGYRRSRSRSRS---LSPRNRKELDRRER------- 248
                          LFG    +H  +  S S + S   LS  + ++  RR R       
Sbjct: 417 HDRPPPRFWIHKMTSLFGYSDEKHMEHESSGSLNDSISDLSTDSHRQPSRRSRSRDHDHA 476

Query: 249 ------DYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVER 261
                  YR R+  G+ +   R D+  R       G      SP R+GS+ER
Sbjct: 477 NVGSTPSYRSRKYHGDTQDSTREDKLRRHAENCHDGDD----SPSRDGSLER 522

The following BLAST results are available for this feature:

BLAST of Carg08596 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521110.1	1.3e-153	100.00	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG65911...	[more]
XP_022936161.1	4.3e-152	99.28	splicing factor U2af small subunit B-like [Cucurbita moschata]	[more]
XP_022142994.1	1.9e-147	96.72	splicing factor U2af small subunit B-like [Momordica charantia]	[more]
XP_022941119.1	3.5e-146	96.38	splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022941120.1 s...	[more]
XP_023525325.1	1.0e-145	96.01	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_02352...	[more]

BLAST of Carg08596 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMY5	9.3e-126	84.34	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q9S709	1.1e-123	80.48	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q6AUG0	3.3e-115	73.53	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9ZQW8	1.2e-109	72.85	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A1A4K8	8.3e-66	53.47	Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1	[more]

BLAST of Carg08596 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6R3	2.1e-152	99.28	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1CN17	9.0e-148	96.72	splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1IV82	1.7e-146	96.38	splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FSM7	1.7e-146	96.38	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5A7VFL1	2.5e-142	94.98	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of Carg08596 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42820.2	6.6e-127	84.34	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	6.6e-127	84.34	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	8.1e-125	80.48	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G27650.2	4.0e-92	76.45	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	1.3e-29	33.22	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 18..37 score: 85.68 coord: 165..177 score: 63.29 coord: 75..90 score: 54.26 coord: 103..125 score: 65.61 coord: 37..57 score: 62.34 coord: 130..154 score: 63.64
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..275
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 63..142 e-value: 3.5E-4 score: 29.9
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.0087 score: 25.3 coord: 13..39 e-value: 0.0068 score: 25.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 150..174 e-value: 1.4E-4 score: 21.7 coord: 14..38 e-value: 2.8E-7 score: 30.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 13.065497
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 11.413015
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 1.0E-29 score: 104.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..139 e-value: 1.5E-6 score: 27.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..146 score: 10.581908
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..242
None	No IPR available	PANTHER	PTHR12620:SF35	SPLICING FACTOR U2AF SMALL SUBUNIT A	coord: 1..275
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 1.83546E-60 score: 184.875
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 77..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08596-RA	Carg08596-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0030628	pre-mRNA 3'-splice site binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding