Carg08574 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08574
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionexosome complex component RRP41-like
LocationCarg_Chr02: 4887827 .. 4890589 (-)
RNA-Seq ExpressionCarg08574
SyntenyCarg08574
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAAAAGCGACACCTGCTACCACTACGTATTCTCCGTCTCCTACTACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGACGTCGATTGGGTTCGCCCAGATGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTGTATGTCTATCCTGCCCGCTTCTGTTTTTCTCATCTGCTGTTCGCTGCTCCACATAATTAGCTTTACGTTATTGTTTCATTTATTGTATGTTTAGCTGCAGCTTCTGATTATCTTGCTAAAAAAACTGTGGTTTCTAATTGCTGCTAGTCTGAGCTCGTCGTTCTCAATTAGTTAACCCTTGTGGTTTAAAATGTGTTGTTTCCATCAAAGTCTTATTGATAGGTTCATCCTTGGAGGCTTGGTTCAGTATTGTTCGTAGTTAATCATATAGTCATTGACTTCAGAAAATGAGGATTTTACATTTTTGTTGTTGAATTTGCACTGAAACATCATTTTATCATTCACATGCAGTTTTCAGGACTGGTGCTGTAAATGCTGCTTCAGGTTCAGCTTATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTGTGTAAGTTCTAGCTTACGACCTACGTCTTTGCTGATGAGCTTGAGTACCAACGCCCTAACCTACATGAACTTTGATGCTTTTCCTTTTATCATTCAAATCTTTTGCCACTTTTTGCAGCTTTTTGTGCATGAATTAAGAGCTTTACCCTTTCTTTATTCATTTTCTGCGTTCTTTGCATCAGTTTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCGACTTCAATTCGGGGACAGGTGTGAAGGATACTGCTCTCGTTGTATATGTTTTATACATCATACTCTTATCATCATGATTATCTGATTTTGTATGAACTTCATTTGTTAGGGATCAGAAAACAAGGAGTTCTCTTCATTTGCTACATAAAGCTTTGGAGGGGGCAATAATACTGGAGATGTTCCCCAAGACAACTGTTGATGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTAAGTTTAAGACTGTTTTAGATGGATAGTAATTGTTTAGATATTGGCTGACGAACACGAACACGAACAAGTATTCTGGGTTACCCTCACCTGGGGAGTACCAATGCTTTGTTATTCAATTTTGTAGTAGAACATAATAAGACGGTTGAGGATCGTTGGGAGGGAGTCCCCATATTGGCTAATTAAGGGGTTGATCATGGGTTTATAAGTAAGGAATAGATCTCCATTGGTACGAGGCCTTTGGGGGAAGCCCAAAGCAAAACCAATGGGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATTCATAGTTTCTAACAAGAGCTCATAATGCTGTGGAGCTTGTTGGTTACTTATTTTGGGTCACTTAACTACTTGTCAGCCATAGGTTTCACATTAAGGTATCCATGAGTCAAATTTTATGCTTGCTGGCATCAGTTTGGAGATAGAACCGACTAGTTTTCTCCTTAGCTCTTTGCATGTAACGACCCAAGCCCACTACTAGCAGATATTGTCCTCTTTGGGCTTCCTCTCAAGGTTTTAAAACGTGTCTGCTAGAGAAAGGTTTCCACACCCTTATAAAAAATGTTTTGTTCTCCTTCCCACATCGATTGGAGAAGGGAACGAGTGCCAGCAAAGACACTGGCCCCAAAGGGAGGTGGATTGTGAGATCCCACGTCAGTTGGGAAGGAGAATGAAGCATCCTTTACAAGGGTGTGAAAATCTTTCCCTAGCAAACGCGTTTTTAACCCTTGAGGGAAAGCCCGAAAGGAAAAGCTCAAAAAGGTCAATATCTGCTAGCAGTGGGCACTTATGTCAGTACCTTCAGATTTTATACTTTTTATGTAAACTAAAGCATGGAAGTAAGGTTACCTTTTCTCTAATATTGACATTTTGTTGTGGCAGGTGAGCTTCCTGTTATGATATCATGTGCTAGTCTTGCACTTGCTGATGCAGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATTCCGATTCCAACATAATGCACTCATAATTCTTTATTTTTAAGTTCTTATACAGTCACTCATATCTGTTAACCAGAGCTGTTTTGGGAAGAATCTTCTTATTGATCCTATGTTGGAGGAGGAAAACTACGAAGATGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAACTCACTCAGCTCACTATCACAGGCCAGTGGTCAACTGCTAAAATTAATGAGGTAAACATCTACTTTTAAGTTCATCTTTCAACCCTACCAGAGTCACGAGAAGTTGAGAAGTAAACAATATGTTATCTATAATACCACCACAGGGTATGCAACTTTGCGTTGATGCGTCGTGTAAGCTTGTGAAGATCATGCGGTCATGTTTGAAGGAATCTGCCACCATTTCAGAGGAATAAAAGTAAGCCATTTTTTCATTCCAAGGAAAAGAACACAAAAGAATTGGAATGGTGGAAGAAGCGAAGTTGACTTGAAGCTATTTTTGCATTTATTATAATGTTGGTGAGTCAAGTCAGAGCCTCAGCCTACCTCTTTCTGGTCTTCCTGGTCTATGGTCTGCGCTTCTGCCAACGCCCATTTTCAAAGTCTATTCCCCCACCAAAGTCAATTTTCATTATATACATGTATGTGTATTATTCTTTTTTTAATGGTTAGTTATGATCCTTTGAGATAATA

mRNA sequence

ATGGCAAAAAAAGCGACACCTGCTACCACTACGTATTCTCCGTCTCCTACTACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGACGTCGATTGGGTTCGCCCAGATGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTTTTTCAGGACTGGTGCTGTAAATGCTGCTTCAGGTTCAGCTTATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTGTTTTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCGACTTCAATTCGGGGACAGGTGGATCAGAAAACAAGGAGTTCTCTTCATTTGCTACATAAAGCTTTGGAGGGGGCAATAATACTGGAGATGTTCCCCAAGACAACTGTTGATGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGAGCTTCCTGTTATGATATCATGTGCTAGTCTTGCACTTGCTGATGCAGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGTTTTGGGAAGAATCTTCTTATTGATCCTATGTTGGAGGAGGAAAACTACGAAGATGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAACTCACTCAGCTCACTATCACAGGCCAGTGGTCAACTGCTAAAATTAATGAGGGTATGCAACTTTGCGTTGATGCGTCGTGTAAGCTTGTGAAGATCATGCGGTCATGTTTGAAGGAATCTGCCACCATTTCAGAGGAATAAAAGTAAGCCATTTTTTCATTCCAAGGAAAAGAACACAAAAGAATTGGAATGGTGGAAGAAGCGAAGTTGACTTGAAGCTATTTTTGCATTTATTATAATGTTGGTGAGTCAAGTCAGAGCCTCAGCCTACCTCTTTCTGGTCTTCCTGGTCTATGGTCTGCGCTTCTGCCAACGCCCATTTTCAAAGTCTATTCCCCCACCAAAGTCAATTTTCATTATATACATGTATGTGTATTATTCTTTTTTTAATGGTTAGTTATGATCCTTTGAGATAATA

Coding sequence (CDS)

ATGGCAAAAAAAGCGACACCTGCTACCACTACGTATTCTCCGTCTCCTACTACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGACGTCGATTGGGTTCGCCCAGATGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTTTTTCAGGACTGGTGCTGTAAATGCTGCTTCAGGTTCAGCTTATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTGTTTTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCGACTTCAATTCGGGGACAGGTGGATCAGAAAACAAGGAGTTCTCTTCATTTGCTACATAAAGCTTTGGAGGGGGCAATAATACTGGAGATGTTCCCCAAGACAACTGTTGATGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGAGCTTCCTGTTATGATATCATGTGCTAGTCTTGCACTTGCTGATGCAGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGTTTTGGGAAGAATCTTCTTATTGATCCTATGTTGGAGGAGGAAAACTACGAAGATGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAACTCACTCAGCTCACTATCACAGGCCAGTGGTCAACTGCTAAAATTAATGAGGGTATGCAACTTTGCGTTGATGCGTCGTGTAAGCTTGTGAAGATCATGCGGTCATGTTTGAAGGAATCTGCCACCATTTCAGAGGAATAA

Protein sequence

MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE
Homology
[Close]
BLAST of Carg08574 vs. NCBI nr
Match: KAG7035475.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 508.4 bits (1308), Expect = 3.5e-140
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL 120

Query: 121 HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS 180
           HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK 240
           CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK
Sbjct: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK 240

Query: 241 LVKIMRSCLKESATISEE 259
           LVKIMRSCLKESATISEE
Sbjct: 241 LVKIMRSCLKESATISEE 258

[Close]
BLAST of Carg08574 vs. NCBI nr
Match: XP_023534485.1 (exosome complex component RRP41-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 464.9 bits (1195), Expect = 4.4e-127
Identity = 238/258 (92.25%), Postives = 245/258 (94.96%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDI RLNCSVSY+TFST +RGQ  +    S  +L
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIDRLNCSVSYSTFSTPVRGQGSENKEFS-SML 120

Query: 121 HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS 180
           HKALEGAIILEMFPKTTVDVFALVLESGG +LPV+ISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILEMFPKTTVDVFALVLESGGIDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK 240
           CFGKNLLIDPMLEEENYEDGSLMITCMPSR ELTQLTITG+WSTAKINEGMQLCVDA CK
Sbjct: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRCELTQLTITGEWSTAKINEGMQLCVDALCK 240

Query: 241 LVKIMRSCLKESATISEE 259
           LVKIMRSCLKESATISEE
Sbjct: 241 LVKIMRSCLKESATISEE 257

[Close]
BLAST of Carg08574 vs. NCBI nr
Match: XP_022140702.1 (exosome complex component RRP41-like [Momordica charantia] >XP_022140703.1 exosome complex component RRP41-like [Momordica charantia])

HSP 1 Score: 462.2 bits (1188), Expect = 2.9e-126
Identity = 232/258 (89.92%), Postives = 246/258 (95.35%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPATTTYSPSPT HKTRPPIFRSD+ DWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+T +RGQ  +    S  +L
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFS-SML 120

Query: 121 HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS 180
           HKALEGAIILE FPKTTVD+FALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILETFPKTTVDIFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK 240
           CFGKNLLIDPMLEEENY+DGSLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCK
Sbjct: 181 CFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVKIMRSCLKESATISEE 259
           LVKIMRSCLKESATIS++
Sbjct: 241 LVKIMRSCLKESATISQD 257

[Close]
BLAST of Carg08574 vs. NCBI nr
Match: XP_023534484.1 (exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458.8 bits (1179), Expect = 3.2e-125
Identity = 237/260 (91.15%), Postives = 245/260 (94.23%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAF--FRTGAVNAAS 60
           MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPA+  FRTGAVNAAS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAYAVFRTGAVNAAS 60

Query: 61  GSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLH 120
           GSAYAEFGNTKVIVSVFGPRESKKAMMYSDI RLNCSVSY+TFST +RGQ  +    S  
Sbjct: 61  GSAYAEFGNTKVIVSVFGPRESKKAMMYSDIDRLNCSVSYSTFSTPVRGQGSENKEFS-S 120

Query: 121 LLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVS 180
           +LHKALEGAIILEMFPKTTVDVFALVLESGG +LPV+ISCASLALADAGIMLYDLVASVS
Sbjct: 121 MLHKALEGAIILEMFPKTTVDVFALVLESGGIDLPVVISCASLALADAGIMLYDLVASVS 180

Query: 181 VSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDAS 240
           VSCFGKNLLIDPMLEEENYEDGSLMITCMPSR ELTQLTITG+WSTAKINEGMQLCVDA 
Sbjct: 181 VSCFGKNLLIDPMLEEENYEDGSLMITCMPSRCELTQLTITGEWSTAKINEGMQLCVDAL 240

Query: 241 CKLVKIMRSCLKESATISEE 259
           CKLVKIMRSCLKESATISEE
Sbjct: 241 CKLVKIMRSCLKESATISEE 259

[Close]
BLAST of Carg08574 vs. NCBI nr
Match: KAG6570792.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 458.0 bits (1177), Expect = 5.4e-125
Identity = 234/259 (90.35%), Postives = 245/259 (94.59%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPAT+TYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFST +RGQ  +    S  +L
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFS-SML 120

Query: 121 HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS 180
           HKALEGAIILE FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK 240
           CFGKNLLIDP LEEENY+DGSLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCK
Sbjct: 181 CFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVKIMRSCLKES-ATISEE 259
           LV IMRSCLKES AT+SEE
Sbjct: 241 LVTIMRSCLKESAATVSEE 258

[Close]
BLAST of Carg08574 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 2.6e-98
Identity = 184/259 (71.04%), Postives = 216/259 (83.40%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MA K   AT TYSP     ++R PIF+  D+DW RPDGRGFHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQ-VDQKTRSSLHL 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++   GQ  D K  SS  +
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSS--M 120

Query: 121 LHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSV 180
           LHKALEG I++E FPKTTVDVFALVLESGGS+L V+ISCASLALADAGIM+YDL+ +VSV
Sbjct: 121 LHKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSV 180

Query: 181 SCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASC 240
           SC GK+L+IDP+ EEE  EDGS M+TCMPSRYE+TQLTITG+W+T  INE MQLC+DAS 
Sbjct: 181 SCIGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASS 240

Query: 241 KLVKIMRSCLKESATISEE 259
           KL +IMR CLK+SA+ S+E
Sbjct: 241 KLGEIMRDCLKQSASASDE 256

[Close]
BLAST of Carg08574 vs. ExPASy Swiss-Prot
Match: Q8U0L9 (Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 78/233 (33.48%), Postives = 125/233 (53.65%), Query Frame = 0 

Query: 22  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTSIRGQ--VDQKTRSSLHLLHKALEGAIILEMFPKTTV 141
            K +   D   L    +   FS   R +   D+++     ++  ALE A+ILEMFP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAI 123

Query: 142 DVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYE 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKE 252
           +  + +  MP + ++T L + G  +  +  E ++L +  +  + +  R  LKE
Sbjct: 184 EADVPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236

[Close]
BLAST of Carg08574 vs. ExPASy Swiss-Prot
Match: O59223 (Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-26
Identity = 77/233 (33.05%), Postives = 126/233 (54.08%), Query Frame = 0 

Query: 22  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTSIRGQ--VDQKTRSSLHLLHKALEGAIILEMFPKTTV 141
            K +   D   L    +   FS   R +   D+++     ++  ALE A+ILEMFP+T++
Sbjct: 64  SKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSI 123

Query: 142 DVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYE 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKE 252
           +  + +  MP + ++T L + G  +  +  E ++L +  +  + +  R  LKE
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKE 236

[Close]
BLAST of Carg08574 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 78/222 (35.14%), Postives = 117/222 (52.70%), Query Frame = 0 

Query: 39  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVS 98
           RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C   
Sbjct: 37  RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96

Query: 99  YTTFSTSIRGQVDQ--KTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVM 158
              FS   RG   Q  + R     L ++L   + L  +P++ +DV  +VLE+ GS L   
Sbjct: 97  LAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHA 156

Query: 159 ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEE------ENYED--GSLMITCM 218
           ++CAS+ALADAGI +YD+V   ++   G   L+DP   E      E Y D  G + +  +
Sbjct: 157 VTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALL 216

Query: 219 PSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCL 250
           P+  +++ L   G+     + E M+ C+D   KL  +++  L
Sbjct: 217 PNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQAL 258

[Close]
BLAST of Carg08574 vs. ExPASy Swiss-Prot
Match: Q9V119 (Exosome complex component Rrp41 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=rrp41 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-25
Identity = 77/233 (33.05%), Postives = 124/233 (53.22%), Query Frame = 0 

Query: 22  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D +  R DGR  ++ RP     G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTSIRGQ--VDQKTRSSLHLLHKALEGAIILEMFPKTTV 141
            K +   D   L    +   FS   R +   D+++     ++  ALE A+ILEMFP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAI 123

Query: 142 DVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYE 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKE 252
           +  + +  MP + ++T L + G  +  +  E ++L +  +  + +  R  LKE
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236

[Close]
BLAST of Carg08574 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.4e-126
Identity = 232/258 (89.92%), Postives = 246/258 (95.35%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPATTTYSPSPT HKTRPPIFRSD+ DWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+T +RGQ  +    S  +L
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFS-SML 120

Query: 121 HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS 180
           HKALEGAIILE FPKTTVD+FALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILETFPKTTVDIFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK 240
           CFGKNLLIDPMLEEENY+DGSLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCK
Sbjct: 181 CFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVKIMRSCLKESATISEE 259
           LVKIMRSCLKESATIS++
Sbjct: 241 LVKIMRSCLKESATISQD 257

[Close]
BLAST of Carg08574 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.6e-125
Identity = 234/259 (90.35%), Postives = 245/259 (94.59%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPAT+TYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFST +RGQ  +    S  +L
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFS-SML 120

Query: 121 HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS 180
           HKALEGAIILE FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK 240
           CFGKNLLIDP LEEENY+DGSLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCK
Sbjct: 181 CFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVKIMRSCLKES-ATISEE 259
           LV IMRSCLKES AT+SEE
Sbjct: 241 LVTIMRSCLKESAATVSEE 258

[Close]
BLAST of Carg08574 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.6e-125
Identity = 234/259 (90.35%), Postives = 244/259 (94.21%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFST +RGQ  +    S  +L
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFS-SML 120

Query: 121 HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS 180
           HKALEGAII E FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIIFETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK 240
           CFGKNLLIDP LEEENY+DGSLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCK
Sbjct: 181 CFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVKIMRSCLKES-ATISEE 259
           LV IMRSCLKES AT+SEE
Sbjct: 241 LVTIMRSCLKESAATVSEE 258

[Close]
BLAST of Carg08574 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.1e-122
Identity = 229/260 (88.08%), Postives = 246/260 (94.62%), Query Frame = 0 

Query: 1   MAKKATP-ATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP  TTTYSPSPT HKTRPP+FR+DDV+WVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHL 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFST +RGQ  +    S  +
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFS-SM 120

Query: 121 LHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSV 180
           LHK+LEGAIILE FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSV
Sbjct: 121 LHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV 180

Query: 181 SCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASC 240
           SCFGKNLLIDP+LEEENY+DGSLMITCMPSRYE+TQLTITG+W+T+KINEGMQLC+DASC
Sbjct: 181 SCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASC 240

Query: 241 KLVKIMRSCLKES-ATISEE 259
           KLV+IMRSCLKES ATISEE
Sbjct: 241 KLVEIMRSCLKESAATISEE 259

[Close]
BLAST of Carg08574 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 1.0e-121
Identity = 226/259 (87.26%), Postives = 244/259 (94.21%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT HKTRP +FR+DDV+WVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLL 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFST +RGQ   + +    +L
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKDFSSML 120

Query: 121 HKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVS 180
           HK+LEGAIILE FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCK 240
           CFGKNLLID +LEEENY+DGSLMITCMPSRYE+TQLTITG+W+T+KINEGMQLC+DASCK
Sbjct: 181 CFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVKIMRSCLKESA-TISEE 259
           LV+IMRSCLKESA TISEE
Sbjct: 241 LVEIMRSCLKESAVTISEE 258

[Close]
BLAST of Carg08574 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 359.8 bits (922), Expect = 1.9e-99
Identity = 184/259 (71.04%), Postives = 216/259 (83.40%), Query Frame = 0 

Query: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MA K   AT TYSP     ++R PIF+  D+DW RPDGRGFHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQ-VDQKTRSSLHL 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++   GQ  D K  SS  +
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSS--M 120

Query: 121 LHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSV 180
           LHKALEG I++E FPKTTVDVFALVLESGGS+L V+ISCASLALADAGIM+YDL+ +VSV
Sbjct: 121 LHKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSV 180

Query: 181 SCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASC 240
           SC GK+L+IDP+ EEE  EDGS M+TCMPSRYE+TQLTITG+W+T  INE MQLC+DAS 
Sbjct: 181 SCIGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASS 240

Query: 241 KLVKIMRSCLKESATISEE 259
           KL +IMR CLK+SA+ S+E
Sbjct: 241 KLGEIMRDCLKQSASASDE 256

[Close]
BLAST of Carg08574 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-20
Identity = 65/223 (29.15%), Postives = 109/223 (48.88%), Query Frame = 0 

Query: 34  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 93
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 94  LNCSVSYTTFSTS--IRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGG 153
           + C  S   FST    R + D+++     ++ + +E  I+ E+ P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 154 SELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPS 213
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P 
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 214 RYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES 253
             +++ L +  +           L  +    + + +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]
BLAST of Carg08574 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-20
Identity = 65/223 (29.15%), Postives = 109/223 (48.88%), Query Frame = 0 

Query: 34  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 93
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 94  LNCSVSYTTFSTS--IRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGG 153
           + C  S   FST    R + D+++     ++ + +E  I+ E+ P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 154 SELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPS 213
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P 
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 214 RYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES 253
             +++ L +  +           L  +    + + +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]
BLAST of Carg08574 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-10
Identity = 47/163 (28.83%), Postives = 75/163 (46.01%), Query Frame = 0 

Query: 35  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 94
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 95  SVSYTTFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPV 154
              +        GQ+ +  +    +L + ++   +L + P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 155 MISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE 196
            I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

[Close]
BLAST of Carg08574 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-10
Identity = 47/163 (28.83%), Postives = 75/163 (46.01%), Query Frame = 0 

Query: 35  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 94
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 95  SVSYTTFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPV 154
              +        GQ+ +  +    +L + ++   +L + P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 155 MISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE 196
            I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

The following BLAST results are available for this feature:
BLAST of Carg08574 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035475.13.5e-140100.00Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma su... [more]
XP_023534485.14.4e-12792.25exosome complex component RRP41-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022140702.12.9e-12689.92exosome complex component RRP41-like [Momordica charantia] >XP_022140703.1 exoso... [more]
XP_023534484.13.2e-12591.15exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6570792.15.4e-12590.35Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma su... [more]
BLAST of Carg08574 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2RVK72.6e-9871.04Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L P... [more]
Q8U0L91.6e-2633.48Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM ... [more]
O592232.7e-2633.05Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / D... [more]
Q6P0I83.5e-2635.14Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2[more]
Q9V1191.0e-2533.05Exosome complex component Rrp41 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272... [more]
BLAST of Carg08574 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CHT01.4e-12689.92exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1JDA92.6e-12590.35exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981... [more]
A0A6J1FYV12.6e-12590.35exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC1114490... [more]
A0A1S3CKF32.1e-12288.08exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=... [more]
A0A0A0KEK61.0e-12187.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1[more]
BLAST of Carg08574 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G27490.11.9e-9971.043'-5'-exoribonuclease family protein [more]
AT3G61620.11.7e-2029.153'-5'-exoribonuclease family protein [more]
AT3G61620.21.7e-2029.153'-5'-exoribonuclease family protein [more]
AT3G46210.16.2e-1028.83Ribosomal protein S5 domain 2-like superfamily protein [more]
AT3G46210.26.2e-1028.83Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 43..168
e-value: 2.0E-28
score: 99.5
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 31..256
e-value: 2.1E-59
score: 202.9
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 172..232
e-value: 2.2E-6
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR11953:SF2EXOSOME COMPLEX COMPONENT MTR3coord: 16..253
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 16..253
NoneNo IPR availableCDDcd11371RNase_PH_MTR3coord: 44..251
e-value: 7.32074E-93
score: 270.591
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 33..195
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 170..253

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08574-RACarg08574-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071028 nuclear mRNA surveillance
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0071051 polyadenylation-dependent snoRNA 3'-end processing
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0009845 seed germination
biological_process GO:0034475 U4 snRNA 3'-end processing
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0005730 nucleolus
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0016740 transferase activity