Carg08570 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08570
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor TCP14-like
Location	Carg_Chr02: 4910139 .. 4910663 (-)
RNA-Seq Expression	Carg08570
Synteny	Carg08570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCAAAAAACATGAGAGTCAAGAAGGCTACATCTAACTCCCCAAGAAGTGTACCAAATGCCTCAGAGTCTAAGCCCATCCCTTCCAAAGCTCTGAAAGATCGCCATGCCAAGGTTCAGGGGCGCGATCGACGTATCCGCCTTCCACCATTGTGTGCAGCTCGGGTATTTCAGCTAACTCGCGAGCTTGGAAATAAAACAGATGGGCAGACTGTAGAGTGGCTGTTGAAGAAGGCTGAGCCATCAATTATAGCTATAACTGGTAAAGATATTGCCTCTGCTGCTCCAGAGTTACATGGCTGCAAGCCTTCTGATCCATCTTCATCTACTACTACTACTACTACAGCAAAAACTTTGGATGGAAACAACTATGCATTCCCAACTGTTGATGAGCAGGTACCTTTGCCAAATTATGAATTTGACTTGGTCTCGGATTTTGAGATGGAACTTTTTGCTCGTCATATCAACACTCTTCAAGAAGTACCAGAAAACTCCGAGAGAGAAGCCGAGGACGACGACTGA

mRNA sequence

ATGGGTTCAAAAAACATGAGAGTCAAGAAGGCTACATCTAACTCCCCAAGAAGTGTACCAAATGCCTCAGAGTCTAAGCCCATCCCTTCCAAAGCTCTGAAAGATCGCCATGCCAAGGTTCAGGGGCGCGATCGACGTATCCGCCTTCCACCATTGTGTGCAGCTCGGGTATTTCAGCTAACTCGCGAGCTTGGAAATAAAACAGATGGGCAGACTGTAGAGTGGCTGTTGAAGAAGGCTGAGCCATCAATTATAGCTATAACTGGTAAAGATATTGCCTCTGCTGCTCCAGAGTTACATGGCTGCAAGCCTTCTGATCCATCTTCATCTACTACTACTACTACTACAGCAAAAACTTTGGATGGAAACAACTATGCATTCCCAACTGTTGATGAGCAGGTACCTTTGCCAAATTATGAATTTGACTTGGTCTCGGATTTTGAGATGGAACTTTTTGCTCGTCATATCAACACTCTTCAAGAAGTACCAGAAAACTCCGAGAGAGAAGCCGAGGACGACGACTGA

Coding sequence (CDS)

ATGGGTTCAAAAAACATGAGAGTCAAGAAGGCTACATCTAACTCCCCAAGAAGTGTACCAAATGCCTCAGAGTCTAAGCCCATCCCTTCCAAAGCTCTGAAAGATCGCCATGCCAAGGTTCAGGGGCGCGATCGACGTATCCGCCTTCCACCATTGTGTGCAGCTCGGGTATTTCAGCTAACTCGCGAGCTTGGAAATAAAACAGATGGGCAGACTGTAGAGTGGCTGTTGAAGAAGGCTGAGCCATCAATTATAGCTATAACTGGTAAAGATATTGCCTCTGCTGCTCCAGAGTTACATGGCTGCAAGCCTTCTGATCCATCTTCATCTACTACTACTACTACTACAGCAAAAACTTTGGATGGAAACAACTATGCATTCCCAACTGTTGATGAGCAGGTACCTTTGCCAAATTATGAATTTGACTTGGTCTCGGATTTTGAGATGGAACTTTTTGCTCGTCATATCAACACTCTTCAAGAAGTACCAGAAAACTCCGAGAGAGAAGCCGAGGACGACGACTGA

Protein sequence

MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTLDGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD

Homology

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BLAST of Carg08570 vs. NCBI nr
Match: KAG7035479.1 (Transcription factor TCP15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.1 bits (871), Expect = 1.1e-89
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60
           MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL
Sbjct: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60

Query: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL 120
           TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL
Sbjct: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL 120

Query: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 175
           DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD
Sbjct: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 174

[Close]

BLAST of Carg08570 vs. NCBI nr
Match: XP_023533029.1 (transcription factor TCP7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338.6 bits (867), Expect = 3.2e-89
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60
           MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL
Sbjct: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60

Query: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL 120
           TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL
Sbjct: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL 120

Query: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 175
           DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARH NTLQEVPENSEREAEDDD
Sbjct: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHFNTLQEVPENSEREAEDDD 174

[Close]

BLAST of Carg08570 vs. NCBI nr
Match: XP_022958512.1 (transcription factor TCP14-like [Cucurbita moschata])

HSP 1 Score: 334.0 bits (855), Expect = 8.0e-88
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60
           MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL
Sbjct: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60

Query: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL 120
           TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSS TTTTTAKTL
Sbjct: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSS-TTTTTAKTL 120

Query: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 175
           DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD
Sbjct: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 173

[Close]

BLAST of Carg08570 vs. NCBI nr
Match: KAG6605560.1 (Transcription factor TCP15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.9 bits (847), Expect = 6.8e-87
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 6   MRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQLTRELG 65
           MRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQLTRELG
Sbjct: 1   MRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQLTRELG 60

Query: 66  NKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTLDGNNY 125
           NKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTLDGNNY
Sbjct: 61  NKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTLDGNNY 120

Query: 126 AFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 175
           AFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD
Sbjct: 121 AFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 169

[Close]

BLAST of Carg08570 vs. NCBI nr
Match: XP_022996075.1 (transcription factor TCP14-like [Cucurbita maxima])

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60
           MGSKNMRVKKATSNSPR VPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL
Sbjct: 1   MGSKNMRVKKATSNSPRGVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60

Query: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL 120
           TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKP+DPSSSTTTTTTAKT 
Sbjct: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPTDPSSSTTTTTTAKTF 120

Query: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 175
           DGNNYAFPTVDEQVPLPNYEFDLVSDF+MELFA HINTLQEV ENSEREAEDDD
Sbjct: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFDMELFAHHINTLQEVAENSEREAEDDD 174

[Close]

BLAST of Carg08570 vs. ExPASy Swiss-Prot
Match: Q9C9L2 (Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.7e-21
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 15  SPRSVPNASESKPIPSK-ALKDRHAKVQGRDRRIRLPPLCAARVFQLTRELGNKTDGQTV 74
           S  S PN+   KP P + + KDRH KV+GR RRIR+P +CAARVFQLTRELG+K+DG+T+
Sbjct: 33  STTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETI 92

Query: 75  EWLLKKAEPSIIAITG 90
           EWLL++AEP++IA TG
Sbjct: 93  EWLLQQAEPAVIAATG 108

[Close]

BLAST of Carg08570 vs. ExPASy Swiss-Prot
Match: Q53PH2 (Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-19
Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 34  KDRHAKVQGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIAITG 90
           KDRH KV+GR RRIR+P LCAARVFQLTRELG+KTDG+T+EWLL++AEP+I+A TG
Sbjct: 153 KDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATG 208

[Close]

BLAST of Carg08570 vs. ExPASy Swiss-Prot
Match: Q9FTA2 (Transcription factor TCP21 OS=Arabidopsis thaliana OX=3702 GN=TCP21 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-19
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 34  KDRHAKVQGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIAITGKDIA 93
           KDRH+KV GR RRIR+P +CAARVFQLTRELG+K+DGQT+EWLL++AEPSIIA TG    
Sbjct: 32  KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGT--- 91

Query: 94  SAAPELHGCKPSDPSSSTTTTTTAKTL 121
                  G  P+  S+++ +T++  TL
Sbjct: 92  -------GTTPASFSTASLSTSSPFTL 108

[Close]

BLAST of Carg08570 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-18
Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 9   KKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQLTRELGNKT 68
           K+       S   A++  P+   + KDRH KV GR RRIR+P LCAARVFQLTRELG+K+
Sbjct: 93  KELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKS 152

Query: 69  DGQTVEWLLKKAEPSIIAITGK-DIASAAPELHGCKPSDPSSSTTTT---TTAKTLDGNN 128
           DG+T+EWLL++AEPS+IA TG   I +    L+    S  SS +  +   + A T   NN
Sbjct: 153 DGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSLPSHFRSAASTFSPNN 212

Query: 129 YAFPTVDEQ 134
              P + +Q
Sbjct: 213 IFSPAMLQQ 221

[Close]

BLAST of Carg08570 vs. ExPASy Swiss-Prot
Match: Q9C7G4 (Transcription factor TCP22 OS=Arabidopsis thaliana OX=3702 GN=TCP22 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-18
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 5   NMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQLTREL 64
           N+     +S S  S    +  K    K  KDRH KV GR RRIR+P +CAARVFQLTREL
Sbjct: 35  NISTSATSSTSTSSGSALAVVKSAVKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTREL 94

Query: 65  GNKTDGQTVEWLLKKAEPSIIAITG 90
           G+K+DG+T+EWLL++AEP+IIA TG
Sbjct: 95  GHKSDGETIEWLLQQAEPAIIASTG 119

[Close]

BLAST of Carg08570 vs. ExPASy TrEMBL
Match: A0A6J1H216 (transcription factor TCP14-like OS=Cucurbita moschata OX=3662 GN=LOC111459721 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 3.9e-88
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60
           MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL
Sbjct: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60

Query: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL 120
           TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSS TTTTTAKTL
Sbjct: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSS-TTTTTAKTL 120

Query: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 175
           DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD
Sbjct: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 173

[Close]

BLAST of Carg08570 vs. ExPASy TrEMBL
Match: A0A6J1K5P6 (transcription factor TCP14-like OS=Cucurbita maxima OX=3661 GN=LOC111491390 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.3e-87
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MGSKNMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60
           MGSKNMRVKKATSNSPR VPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL
Sbjct: 1   MGSKNMRVKKATSNSPRGVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQL 60

Query: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPSDPSSSTTTTTTAKTL 120
           TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKP+DPSSSTTTTTTAKT 
Sbjct: 61  TRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGCKPTDPSSSTTTTTTAKTF 120

Query: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSEREAEDDD 175
           DGNNYAFPTVDEQVPLPNYEFDLVSDF+MELFA HINTLQEV ENSEREAEDDD
Sbjct: 121 DGNNYAFPTVDEQVPLPNYEFDLVSDFDMELFAHHINTLQEVAENSEREAEDDD 174

[Close]

BLAST of Carg08570 vs. ExPASy TrEMBL
Match: A0A5A7T0X8 (Transcription factor TCP7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00200 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.1e-65
Identity = 143/185 (77.30%), Postives = 153/185 (82.70%), Query Frame = 0


Query: 1   MGSKNMRVKKATSNSPRSVPN-----ASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAA 60
           MGSKNMRVKK TSNSPR+ P      ASESK IPSKA KDRHAKV GRDRRIRLPPLCAA
Sbjct: 1   MGSKNMRVKKPTSNSPRNAPKLNSPIASESKLIPSKAPKDRHAKVHGRDRRIRLPPLCAA 60

Query: 61  RVFQLTRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGC-KPSDPSSSTTTT 120
           RVFQLTRELGNKTDGQTVEWLLKKAEPSIIA+TGK+IASA  +L GC KP DPSSS   +
Sbjct: 61  RVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASATLDLPGCSKPFDPSSSNINS 120

Query: 121 TTA-----KTLDGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSERE 175
           TT      +TL GNNYAFPTV+E +PLPNYEFDLVSDF+MELFA HI TLQEV ENSE+E
Sbjct: 121 TTTSYFEEETLGGNNYAFPTVNECIPLPNYEFDLVSDFDMELFAHHIATLQEVAENSEQE 180

[Close]

BLAST of Carg08570 vs. ExPASy TrEMBL
Match: A0A0A0KDC7 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G147520 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.1e-65
Identity = 142/185 (76.76%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MGSKNMRVKKATSNSPRSVPN-----ASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAA 60
           MGSK+MRVK+ TSNSPR+ P      ASESK IPSKA KDRHAKV GRDRRIRLPPLCAA
Sbjct: 1   MGSKHMRVKRPTSNSPRNAPKPNSPIASESKLIPSKAPKDRHAKVHGRDRRIRLPPLCAA 60

Query: 61  RVFQLTRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGC-KPSDPSSSTTTT 120
           RVFQLTRELGNKTDGQTVEWLLKKAEPSIIA+TGK+IASA  +L GC KP DPSSS T +
Sbjct: 61  RVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASATLDLPGCSKPCDPSSSNTNS 120

Query: 121 TTA-----KTLDGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSERE 175
           TT      +TL GNNYAFP V+E +PLPNYEFDLVSDF+MELFA HI TLQEV ENSE+E
Sbjct: 121 TTTSYFEEETLGGNNYAFPMVNECIPLPNYEFDLVSDFDMELFAHHIATLQEVAENSEQE 180

[Close]

BLAST of Carg08570 vs. ExPASy TrEMBL
Match: A0A1S3CNQ2 (transcription factor TCP7 OS=Cucumis melo OX=3656 GN=LOC103503003 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.1e-65
Identity = 143/185 (77.30%), Postives = 153/185 (82.70%), Query Frame = 0


Query: 1   MGSKNMRVKKATSNSPRSVPN-----ASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAA 60
           MGSKNMRVKK TSNSPR+ P      ASESK IPSKA KDRHAKV GRDRRIRLPPLCAA
Sbjct: 1   MGSKNMRVKKPTSNSPRNAPKLNSPIASESKLIPSKAPKDRHAKVHGRDRRIRLPPLCAA 60

Query: 61  RVFQLTRELGNKTDGQTVEWLLKKAEPSIIAITGKDIASAAPELHGC-KPSDPSSSTTTT 120
           RVFQLTRELGNKTDGQTVEWLLKKAEPSIIA+TGK+IASA  +L GC KP DPSSS   +
Sbjct: 61  RVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASATLDLPGCSKPFDPSSSNINS 120

Query: 121 TTA-----KTLDGNNYAFPTVDEQVPLPNYEFDLVSDFEMELFARHINTLQEVPENSERE 175
           TT      +TL GNNYAFPTV+E +PLPNYEFDLVSDF+MELFA HI TLQEV ENSE+E
Sbjct: 121 TTTSYFEEETLGGNNYAFPTVNECIPLPNYEFDLVSDFDMELFAHHIATLQEVAENSEQE 180

[Close]

BLAST of Carg08570 vs. TAIR 10
Match: AT1G69690.1 (TCP family transcription factor )

HSP 1 Score: 101.7 bits (252), Expect = 6.2e-22
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 15  SPRSVPNASESKPIPSK-ALKDRHAKVQGRDRRIRLPPLCAARVFQLTRELGNKTDGQTV 74
           S  S PN+   KP P + + KDRH KV+GR RRIR+P +CAARVFQLTRELG+K+DG+T+
Sbjct: 33  STTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETI 92

Query: 75  EWLLKKAEPSIIAITG 90
           EWLL++AEP++IA TG
Sbjct: 93  EWLLQQAEPAVIAATG 108

[Close]

BLAST of Carg08570 vs. TAIR 10
Match: AT5G08330.1 (TCP family transcription factor )

HSP 1 Score: 95.9 bits (237), Expect = 3.4e-20
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 34  KDRHAKVQGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIAITGKDIA 93
           KDRH+KV GR RRIR+P +CAARVFQLTRELG+K+DGQT+EWLL++AEPSIIA TG    
Sbjct: 32  KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGT--- 91

Query: 94  SAAPELHGCKPSDPSSSTTTTTTAKTL 121
                  G  P+  S+++ +T++  TL
Sbjct: 92  -------GTTPASFSTASLSTSSPFTL 108

[Close]

BLAST of Carg08570 vs. TAIR 10
Match: AT1G72010.1 (TCP family transcription factor )

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-20
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 5   NMRVKKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQLTREL 64
           N+     +S S  S    +  K    K  KDRH KV GR RRIR+P +CAARVFQLTREL
Sbjct: 35  NISTSATSSTSTSSGSALAVVKSAVKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTREL 94

Query: 65  GNKTDGQTVEWLLKKAEPSIIAITG 90
           G+K+DG+T+EWLL++AEP+IIA TG
Sbjct: 95  GHKSDGETIEWLLQQAEPAIIASTG 119

[Close]

BLAST of Carg08570 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-20
Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 9   KKATSNSPRSVPNASESKPIPSKALKDRHAKVQGRDRRIRLPPLCAARVFQLTRELGNKT 68
           K+       S   A++  P+   + KDRH KV GR RRIR+P LCAARVFQLTRELG+K+
Sbjct: 93  KELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKS 152

Query: 69  DGQTVEWLLKKAEPSIIAITGK-DIASAAPELHGCKPSDPSSSTTTT---TTAKTLDGNN 128
           DG+T+EWLL++AEPS+IA TG   I +    L+    S  SS +  +   + A T   NN
Sbjct: 153 DGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSLPSHFRSAASTFSPNN 212

Query: 129 YAFPTVDEQ 134
              P + +Q
Sbjct: 213 IFSPAMLQQ 221

[Close]

BLAST of Carg08570 vs. TAIR 10
Match: AT5G23280.1 (TCP family transcription factor )

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-20
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 34  KDRHAKVQGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIAITGKDIA 93
           KDRH+KV GR RRIR+P +CAARVFQLTRELG+K+DGQT+EWLL++AEPSIIA TG    
Sbjct: 40  KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTT 99

Query: 94  SAAPELHGCKPSDPSSSTTTTTTAKTLDGNNYAF 128
            A+           ++ST+      +L G    F
Sbjct: 100 PASFSTASVSIRGATNSTSLDHKPTSLLGGTSPF 133

The following BLAST results are available for this feature:

BLAST of Carg08570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035479.1	1.1e-89	100.00	Transcription factor TCP15, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023533029.1	3.2e-89	99.43	transcription factor TCP7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958512.1	8.0e-88	99.43	transcription factor TCP14-like [Cucurbita moschata]	[more]
KAG6605560.1	6.8e-87	100.00	Transcription factor TCP15, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022996075.1	1.5e-86	96.55	transcription factor TCP14-like [Cucurbita maxima]	[more]

BLAST of Carg08570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9L2	8.7e-21	63.16	Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1	[more]
Q53PH2	2.2e-19	76.79	Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 ...	[more]
Q9FTA2	4.8e-19	57.47	Transcription factor TCP21 OS=Arabidopsis thaliana OX=3702 GN=TCP21 PE=1 SV=1	[more]
Q93Z00	1.4e-18	44.96	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
Q9C7G4	1.4e-18	56.47	Transcription factor TCP22 OS=Arabidopsis thaliana OX=3702 GN=TCP22 PE=2 SV=1	[more]

BLAST of Carg08570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H216	3.9e-88	99.43	transcription factor TCP14-like OS=Cucurbita moschata OX=3662 GN=LOC111459721 PE...	[more]
A0A6J1K5P6	7.3e-87	96.55	transcription factor TCP14-like OS=Cucurbita maxima OX=3661 GN=LOC111491390 PE=4...	[more]
A0A5A7T0X8	2.1e-65	77.30	Transcription factor TCP7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KDC7	2.1e-65	76.76	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G147520 PE=4 SV...	[more]
A0A1S3CNQ2	2.1e-65	77.30	transcription factor TCP7 OS=Cucumis melo OX=3656 GN=LOC103503003 PE=4 SV=1	[more]

BLAST of Carg08570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69690.1	6.2e-22	63.16	TCP family transcription factor	[more]
AT5G08330.1	3.4e-20	57.47	TCP family transcription factor	[more]
AT1G72010.1	9.9e-20	56.47	TCP family transcription factor	[more]
AT3G47620.1	9.9e-20	44.96	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]
AT5G23280.1	9.9e-20	53.19	TCP family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 34..115 e-value: 5.9E-27 score: 95.1
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 33..87 score: 24.082369
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..46
None	No IPR available	PANTHER	PTHR31072:SF123	TRANSCRIPTION FACTOR PCF1-LIKE	coord: 12..171
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 12..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08570-RA	Carg08570-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding