Carg08545 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08545
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 5059255 .. 5061372 (-)
RNA-Seq ExpressionCarg08545
SyntenyCarg08545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAATCGTCAAAGGAAACGCGTAGTTGAGGACAACCTCGCGTGTTGACAAAACGTTGATTATAAACGACGCCGAATTGCACTTGCATCGCATTGGCTCCCTCGTCGCCATTTGCTTCAAATCGCCGTCACTTTCACCAAGATCTTCATCAACCATCTACGCAGTGCAAAGAACACAGCGCCACCACCAACAAACCGACCCCTCATTGAGCGTTATGGGTGGAGCTCAGGCCCTCAAGAGGATCCCTCGCATCAAGTTCCCCAAGCGACATCCAAACCCCTCTGGTCCGCCTCCATCTACCCTTTTCTTCTCGCTACTTTTATGTACTTCGATCAATGATGATCTTCCTAAACCGAGAAAATCCTTTATGCCCATATGAAAATCGTCGCGTGTTTTTTGTTTTTCTTTTCTAGCTGGTGTTTGTATTCGATCGTTTTCCTTCTGTTCTGTTCGTTAATTATTGACTTGTTCTTTGACTTCACCTGTATTTATTGCTGTGGTTTGTGCCTTCGTTTGATTTCTGTTTGACTGCTTGGAGCTGGGTTTTTTCTGTTTAGCATGATCAGATCTTTGTCCTTATGGTTTGGATTTTATTTGCCTGTTTTAGCTTGTTGATGGAGAACCTGGTGCACTCATGTGGACTAAATGTGTTTGTTATTAATTGGTTTTCTACATTTGAGTAGCAATTTGTTAACCTAGATTTTGAAATGTAATGAAACAGATTAGCTAACCAAGCCTCAGGGTCAGAGTTTAGAATGAAAACCTAATTCAAAGATATCTACATGGGAGGGGAATTTATTTTTGTGCCTTTTCTGCTTCTATTAAGTCCTGAGTATCTAAGCACTAATTTGAGAAACCTTTCTATATGTTTCTATGTCAATTTCATATGTCTTTTCCATTTCAAAGTTGACTCAAAACCGACTTGACAAGCACTCCGAATATTGCTACCTCTTTGAAAAGAGAGAAAAAAAGAAGGGTTAGGCAATGTATTGAAGTTGTGTATTTGTAGCTTACTTGTTTTAATAGACATGGATGATCATTAACGAGGTGAAGTACCGTATAATAGACATTGATGATCATTAACTCACTTTCCCCTCTTTTGATGCTTGGACGGTCAGTGTCTTTGTAGTTATTTGAATGCTTGGGTTTTAATAGACGTGGATGATCATTAACGAGTTGAAATATCGTATAATATCGATTGTTGAATGCTGTCTTGGTGTTGTGTTTTCTAAAGTTATATGTCAAGTAATTTTATTGTAGTAAATACTGAAGAATGTTTACAGGTTCTACTTCTCAGACTCCAACAAGCATTGGGGTGGATGATCAAGTCTTATTCTTATCTTTAAATGAAAAGGCATCCAAAACTATTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATGTCCAATGAGGAGATTGAAGCTATTTTGGTAACGTATTCCTATTTGGTTATTGCCTTGTTTTTTCTTCTAATGCAATGTGCTTCAAGCATTCAATTTGGACCTTTCTTGTTGCAAGAAATGAATCAAATCGACATGAGATACAAACCTTAAACCTTAAAAGAAATCCCAGCTGTTTGGTCGGAAAGCATGAGTCGTTGGTTTGTGTTTTAGAAAGTCGTCTTCGGTTCATTATAGTTGTTCGTTAATGGAACGTGGAGTTGATATTTTTTCATTGAGTATTACTTAGATGTAGTGATGTTAACTTCTAGCATGTCAACCACTTTGGACTTTGAGATTTAATATTATACGAATTACCGATGTAGGAAGGTTAGACGATTGACTTGTGAGAATAGTTAAAACACCCCAGATACTTTAAATTTAAAACATCTGATGAGCTTCGGTTCATTTCTTCTATGAATCATTTACTCCCTGTTTTGCTTTTTACTCACAAATTCTTCAACTTATTTGCAGCTGGGTGGATGCATCTGATGAGCTTTGAGAGTGGAATATAGTATGGTTGTGGACATTCTTTTCTTATATTTAAAGTTTTAGCTTCCAGCATTGAACTTTCTATCAGTATCATCATATCATAATATTATGAAATTTCTATATGCAAAAGAAATACTTGATTTAAATGTTCTTTATAAGAGGAAAGGAAATGCAGTTTGGA

mRNA sequence

AAAGAATCGTCAAAGGAAACGCGTAGTTGAGGACAACCTCGCGTGTTGACAAAACGTTGATTATAAACGACGCCGAATTGCACTTGCATCGCATTGGCTCCCTCGTCGCCATTTGCTTCAAATCGCCGTCACTTTCACCAAGATCTTCATCAACCATCTACGCAGTGCAAAGAACACAGCGCCACCACCAACAAACCGACCCCTCATTGAGCGTTATGGGTGGAGCTCAGGCCCTCAAGAGGATCCCTCGCATCAAGTTCCCCAAGCGACATCCAAACCCCTCTGGTTCTACTTCTCAGACTCCAACAAGCATTGGGGTGGATGATCAAGTCTTATTCTTATCTTTAAATGAAAAGGCATCCAAAACTATTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATGTCCAATGAGGAGATTGAAGCTATTTTGGTAACCTGGGTGGATGCATCTGATGAGCTTTGAGAGTGGAATATAGTATGGTTGTGGACATTCTTTTCTTATATTTAAAGTTTTAGCTTCCAGCATTGAACTTTCTATCAGTATCATCATATCATAATATTATGAAATTTCTATATGCAAAAGAAATACTTGATTTAAATGTTCTTTATAAGAGGAAAGGAAATGCAGTTTGGA

Coding sequence (CDS)

ATGGGTGGAGCTCAGGCCCTCAAGAGGATCCCTCGCATCAAGTTCCCCAAGCGACATCCAAACCCCTCTGGTTCTACTTCTCAGACTCCAACAAGCATTGGGGTGGATGATCAAGTCTTATTCTTATCTTTAAATGAAAAGGCATCCAAAACTATTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATGTCCAATGAGGAGATTGAAGCTATTTTGGTAACCTGGGTGGATGCATCTGATGAGCTTTGA

Protein sequence

MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQPKRTPMSNEEIEAILVTWVDASDEL
Homology
[Close]
BLAST of Carg08545 vs. NCBI nr
Match: KAG7035504.1 (hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.7 bits (426), Expect = 2.1e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP
Sbjct: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPMSNEEIEAILVTWVDASDEL 85
          KRTPMSNEEIEAILVTWVDASDEL
Sbjct: 61 KRTPMSNEEIEAILVTWVDASDEL 84

[Close]
BLAST of Carg08545 vs. NCBI nr
Match: XP_023534508.1 (uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 hypothetical protein SDJN03_02911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-32
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP
Sbjct: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KRTPMSNEEIEAIL+
Sbjct: 61 KRTPMSNEEIEAILL 75

[Close]
BLAST of Carg08545 vs. NCBI nr
Match: XP_022958002.1 (uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 uncharacterized protein LOC111491585 [Cucurbita maxima])

HSP 1 Score: 145.2 bits (365), Expect = 2.5e-31
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MG AQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KRTPMSNEEIEAIL+
Sbjct: 61 KRTPMSNEEIEAILL 75

[Close]
BLAST of Carg08545 vs. NCBI nr
Match: XP_038875405.1 (uncharacterized protein LOC120067868 [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 5.0e-27
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MGGAQA+KRIPRIKFPKRHPNPSGSTS+TP+S GVDDQ+ F SL + ASKT+GGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSGSTSKTPSSSGVDDQIFFSSLEQTASKTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KRTP+SNEEIEAIL+
Sbjct: 61 KRTPLSNEEIEAILL 75

[Close]
BLAST of Carg08545 vs. NCBI nr
Match: XP_022156457.1 (uncharacterized protein LOC111023342 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 7.9e-25
Identity = 60/75 (80.00%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MGGAQA+KRIPRIKFPKRHPNPSGSTSQTP+++GVDDQV+F + N    KT+GGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSGSTSQTPSNLGVDDQVIFSTGN--VLKTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KRTPMSNEEIEA+L+
Sbjct: 61 KRTPMSNEEIEAVLL 73

[Close]
BLAST of Carg08545 vs. ExPASy TrEMBL
Match: A0A6J1K8D8 (uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MG AQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KRTPMSNEEIEAIL+
Sbjct: 61 KRTPMSNEEIEAILL 75

[Close]
BLAST of Carg08545 vs. ExPASy TrEMBL
Match: A0A6J1H0Q6 (uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC111459363 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MG AQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KRTPMSNEEIEAIL+
Sbjct: 61 KRTPMSNEEIEAILL 75

[Close]
BLAST of Carg08545 vs. ExPASy TrEMBL
Match: A0A6J1DS43 (uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023342 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.8e-25
Identity = 60/75 (80.00%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MGGAQA+KRIPRIKFPKRHPNPSGSTSQTP+++GVDDQV+F + N    KT+GGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSGSTSQTPSNLGVDDQVIFSTGN--VLKTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KRTPMSNEEIEA+L+
Sbjct: 61 KRTPMSNEEIEAVLL 73

[Close]
BLAST of Carg08545 vs. ExPASy TrEMBL
Match: A0A1S3AUJ6 (uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 57/75 (76.00%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MGGAQA+KRIPRIKFPKRHP+ SGSTS+TP+S G DD + F SL + ASKT+GGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPSSSGSTSKTPSSNGGDDHIFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KR P+SNEEIEAIL+
Sbjct: 61 KRIPLSNEEIEAILL 75

[Close]
BLAST of Carg08545 vs. ExPASy TrEMBL
Match: A0A0A0KMD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-23
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MGGAQA+KRIPRIKFPKRH + SGSTS+TP+S G DD V F SL + ASKT+GGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHLSSSGSTSKTPSSHGGDDHVFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KRTP+SNEEIEAIL+
Sbjct: 61 KRTPLSNEEIEAILL 75

[Close]
BLAST of Carg08545 vs. TAIR 10
Match: AT4G23885.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 7.9e-15
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          M     LKRIPRIKFP+RH NPS S  ++  +   D   LF S      KT GGKAS QP
Sbjct: 1  MNVVHGLKRIPRIKFPQRHINPSASEGKSQVANEAD--TLFFSNLNNIQKTTGGKASSQP 60

Query: 61 KRTPMSNEEIEAILV 76
          KRTP+SNEE+EAIL+
Sbjct: 61 KRTPVSNEEMEAILL 73

[Close]
BLAST of Carg08545 vs. TAIR 10
Match: AT5G24165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-10
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 7  LKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTI--GGKASLQPKRTP 66
          ++RIPRIKFP+RH   SGS     +  GV   V   S    A K    GGKASLQPKRTP
Sbjct: 1  MRRIPRIKFPQRHSISSGSGPAPGSVSGVKKNVTASSDVPAAPKNTADGGKASLQPKRTP 60

Query: 67 MSNEEIEAILV 76
          +S++EIE+I++
Sbjct: 61 VSDKEIESIML 71

The following BLAST results are available for this feature:
BLAST of Carg08545 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035504.12.1e-38100.00hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023534508.12.3e-3298.67uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 ... [more]
XP_022958002.12.5e-3197.33uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 unchar... [more]
XP_038875405.15.0e-2782.67uncharacterized protein LOC120067868 [Benincasa hispida][more]
XP_022156457.17.9e-2580.00uncharacterized protein LOC111023342 [Momordica charantia][more]
BLAST of Carg08545 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08545 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K8D81.2e-3197.33uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585... [more]
A0A6J1H0Q61.2e-3197.33uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC1114593... [more]
A0A6J1DS433.8e-2580.00uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A1S3AUJ61.6e-2376.00uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=... [more]
A0A0A0KMD83.6e-2377.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1[more]
BLAST of Carg08545 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23885.17.9e-1556.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G24165.13.4e-1050.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR35751FAMILY NOT NAMEDcoord: 2..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08545-RACarg08545-RAmRNA