Carg08485 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08485
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSWR1 complex subunit 2
LocationCarg_Chr02: 5427807 .. 5429756 (+)
RNA-Seq ExpressionCarg08485
SyntenyCarg08485
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACATACATACATACATACATACATACATACATACATACATACATACATACATACATATATATATGGCAAAAACCTGGAGGGAAACAGGGTTGAGGTGGCGGGCTCTGGAATTCGATCGAGTAGATTTTCCCGCGCTCCATCGTTAGATAACCCCAGATCGATTTAGCGTACTGTCCAGTTCCAGTAACCAGAAAATCATCGTAATCCGCTACCACTTTTCGGCCATCGGTAGCCGCCAGTGATTTCCACAAGTCTTGAACTTCAATTTCCAGTATTCGTAAGTGGATTTTGTTTCCCAGCCATGGATTCATCGAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGTACCGGACTACTTGGCTACCTTTTCTTTTCTTTTTTTAGGGATGGATTTATTGTGGACTGGTGACTTACTGATGCAAGATGTTTCAAATTGTATGGATTTGTGAATGGGGTATTTTAATGGCTACAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGAGTTGTTTTGGAATCAGGATGCTCTTAAAGAGGTATTTCTCGAGTATCTTTTTCCCTTCTTTTGAACGATATGGGGTTTTACTCTAATTTTTCTTTGATTTCGGTGGTTAATGGCGAAATCATTACTGCAATTATGAGATGTTGTTCCGTTTCTCCCCCATTTCGTATACACGCGGTTGCTTTTAGGTTATAAAAGTTCAATTTCGTAGATTTTGCTGAAATTTATCAGTGTATACATCCACTTAGATTTGGTTATACATTTGGATTTCCGTCTTGCAATGCCATTGTCTGGATGATGGGGCTTTGGTTTTGACTGAATCAAATACTTTCCTGAACTTGTCAATCCTCGAAATTTGTTGCAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGTGAGTTCTGTTTCAATTCCTTTTCACGACATATTTCTGGTCGGCCATAAAAAGTTTTTCACAACATGGCTTCCTTTTTATGGACAGGACTCTGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGAGAGGTTTGCTATTCTCTGAAGTGCTTGGCTGTTGTATTAGATATATCTGTTTTCTGTTTTAAAATTATGTTTTCTTATAGAACACAAACAAAGAAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTTTCCAAAATTGAGGAATCATCCAAAGATGAAGCATCAACCGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTCCACTAGAACTTCAGCTGTTGTTAGAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGGTGAGTCCTGAATACTTGAATATTTGATTTGTAGGATGAAGACCAAACGTTGTTCATTAGAGTAGCTTGAGTTTTTCTTGAAGGCAGTTTCTTGATTGAATAGGGTGATGCTATGATGAAGTGGGAACACTTCATTTTGGTTCATATATCCTTAAGCTTCTTGAAAAACTTTCATGATCCTATGGATTCTTTAGTCAGCCATTATTCTTTTCATGTCAATGACTAATCATTTCAATCTTTAGATCCATTCTGTGTCCAAGAAGAACACCAAAAATACAAAACAAAATCTTTTGAGTTACCCAGAATGAGTTTGTTCAGGAGTAACTTTAAATTTTATGACACCCAAAATTTGGTTCTCCGTCCGTTTGGTTGTAGTGGTGTCTGGGGACATAAAATCTGTAATGGTTCATGATTCAAGCCCACCGGCAAATATTGTCCTCTTTGAATTTTTTCCTTTCAGGCTTCCCCTCAAGGTTTTTTAAAATGTGTTTGCTAAGGAGGGGTTTCCACACCCTTATAAAGA

mRNA sequence

AAACATACATACATACATACATACATACATACATACATACATACATACATACATACATATATATATGGCAAAAACCTGGAGGGAAACAGGGTTGAGGTGGCGGGCTCTGGAATTCGATCGAGTAGATTTTCCCGCGCTCCATCGTTAGATAACCCCAGATCGATTTAGCGTACTGTCCAGTTCCAGTAACCAGAAAATCATCGTAATCCGCTACCACTTTTCGGCCATCGGTAGCCGCCAGTGATTTCCACAAGTCTTGAACTTCAATTTCCAGTATTCGTAAGTGGATTTTGTTTCCCAGCCATGGATTCATCGAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGAGTTGTTTTGGAATCAGGATGCTCTTAAAGAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGTGAGTTCTGTTTCAATTCCTTTTCACGACATATTTCTGGTCGGCCATAAAAAGTTTTTCACAACATGGCTTCCTTTTTATGGACAGGACTCTGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGAGAGAACACAAACAAAGAAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTTTCCAAAATTGAGGAATCATCCAAAGATGAAGCATCAACCGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTCCACTAGAACTTCAGCTGTTGTTAGAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGGTGAGTCCTGAATACTTGAATATTTGATTTGTAGGATGAAGACCAAACGTTGTTCATTAGAGTAGCTTGAGTTTTTCTTGAAGGCAGTTTCTTGATTGAATAGGGTGATGCTATGATGAAGTGGGAACACTTCATTTTGGTTCATATATCCTTAAGCTTCTTGAAAAACTTTCATGATCCTATGGATTCTTTAGTCAGCCATTATTCTTTTCATGTCAATGACTAATCATTTCAATCTTTAGATCCATTCTGTGTCCAAGAAGAACACCAAAAATACAAAACAAAATCTTTTGAGTTACCCAGAATGAGTTTGTTCAGGAGTAACTTTAAATTTTATGACACCCAAAATTTGGTTCTCCGTCCGTTTGGTTGTAGTGGTGTCTGGGGACATAAAATCTGTAATGGTTCATGATTCAAGCCCACCGGCAAATATTGTCCTCTTTGAATTTTTTCCTTTCAGGCTTCCCCTCAAGGTTTTTTAAAATGTGTTTGCTAAGGAGGGGTTTCCACACCCTTATAAAGA

Coding sequence (CDS)

ATGGATTCATCGAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGAGTTGTTTTGGAATCAGGATGCTCTTAAAGAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGTGAGTTCTGTTTCAATTCCTTTTCACGACATATTTCTGGTCGGCCATAAAAAGTTTTTCACAACATGGCTTCCTTTTTATGGACAGGACTCTGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGAGAGAACACAAACAAAGAAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTTTCCAAAATTGAGGAATCATCCAAAGATGAAGCATCAACCGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTCCACTAGAACTTCAGCTGTTGTTAGAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGGTGAGTCCTGA

Protein sequence

MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEGES
Homology
[Close]
BLAST of Carg08485 vs. NCBI nr
Match: KAG7035562.1 (SWR1 complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI
Sbjct: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
           VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK
Sbjct: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS
Sbjct: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180

Query: 181 AVVREAERDVIRSHNEGES 200
           AVVREAERDVIRSHNEGES
Sbjct: 181 AVVREAERDVIRSHNEGES 199

[Close]
BLAST of Carg08485 vs. NCBI nr
Match: KAG6605652.1 (SWR1 complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.0 bits (733), Expect = 1.3e-73
Identity = 167/196 (85.20%), Postives = 167/196 (85.20%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI
Sbjct: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
           VDEHDSDFSED                             DSEPEEEAENEADERTQTKK
Sbjct: 61  VDEHDSDFSED-----------------------------DSEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS
Sbjct: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 167

Query: 181 AVVREAERDVIRSHNE 197
           AVVREAERDVIRSHNE
Sbjct: 181 AVVREAERDVIRSHNE 167

[Close]
BLAST of Carg08485 vs. NCBI nr
Match: XP_038907261.1 (SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907262.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907263.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907264.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907265.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 238.8 bits (608), Expect = 4.0e-59
Identity = 137/193 (70.98%), Postives = 152/193 (78.76%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDAPVFLDRSSRLTRGKRMTKLLDEEVEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKTSSK+ NKKR VSK+E+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTSSKNKNKKRVVSKVEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]
BLAST of Carg08485 vs. NCBI nr
Match: XP_038907266.1 (SWR1 complex subunit 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 238.8 bits (608), Expect = 4.0e-59
Identity = 137/193 (70.98%), Postives = 152/193 (78.76%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDAPVFLDRSSRLTRGKRMTKLLDEEVEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKTSSK+ NKKR VSK+E+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTSSKNKNKKRVVSKVEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]
BLAST of Carg08485 vs. NCBI nr
Match: XP_022970136.1 (SWR1 complex subunit 2 [Cucurbita maxima] >XP_022970137.1 SWR1 complex subunit 2 [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 6.4e-57
Identity = 135/193 (69.95%), Postives = 150/193 (77.72%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDASVFLDRSSRLTRGKRMTKLLDDELEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTPSKNKNKKRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]
BLAST of Carg08485 vs. ExPASy Swiss-Prot
Match: F4IP06 (SWR1 complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=SWC2 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.6e-26
Identity = 85/189 (44.97%), Postives = 113/189 (59.79%), Query Frame = 0 

Query: 11  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSE 70
           VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ DE DSDF++
Sbjct: 10  VFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDSDFND 69

Query: 71  DVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKKRLVSPGKTSS 130
           D                             + EP+  A NE + R   KKRL+ PGKT+S
Sbjct: 70  D-----------------------------EPEPDAVAVNEKELRDLPKKRLIYPGKTAS 129

Query: 131 KDNNKK-RAVSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVR 190
           K   KK + VS++E     E   +E         E ++  +D E E+  +KSTRTS VVR
Sbjct: 130 KKKKKKTKVVSQLEYIPGDEKPGEELGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVR 169

Query: 191 EAERDVIRS 194
           +AERD +R+
Sbjct: 190 QAERDALRA 169

[Close]
BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A6J1HZS7 (SWR1 complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111469126 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.1e-57
Identity = 135/193 (69.95%), Postives = 150/193 (77.72%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDASVFLDRSSRLTRGKRMTKLLDDELEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTPSKNKNKKRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]
BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A6J1EM84 (SWR1 complex subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111435683 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.1e-57
Identity = 135/193 (69.95%), Postives = 150/193 (77.72%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDASVFLDRSSRLTRGKRMTKLLDDELEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTPSKNKNKKRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]
BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A6J1DZB8 (SWR1 complex subunit 2 OS=Momordica charantia OX=3673 GN=LOC111025980 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.9e-57
Identity = 134/193 (69.43%), Postives = 150/193 (77.72%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           M+++KE  APVFL+RSSR TRGKRMT+LLDEE+EEDELFWNQ+ALKEEE DDEYEE+PEI
Sbjct: 1   METTKEEDAPVFLDRSSRLTRGKRMTRLLDEEVEEDELFWNQEALKEEENDDEYEEEPEI 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEAD+RTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADDRTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKTSSK  NKKRAVSKIE  SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTSSKKKNKKRAVSKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]
BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A5A7UJC3 (SWR1 complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00240 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 4.5e-56
Identity = 135/193 (69.95%), Postives = 149/193 (77.20%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDVPVFLDRSSRLTRGKRMTKLLDEEAEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEA+ERTQ KK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEAEERTQMKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKRAVSKIE+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKT-SKNKNKKRAVSKIEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 163

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 163

[Close]
BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A1S3CUJ8 (SWR1 complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504701 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 7.6e-56
Identity = 135/193 (69.95%), Postives = 149/193 (77.20%), Query Frame = 0 

Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEDDVPVFLDRSSRLTRGKRMTKLLDEEAEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEA+ERTQ KK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEAEERTQMKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKRAVSKIE+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKT-SKNKNKKRAVSKIEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 163

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 163

[Close]
BLAST of Carg08485 vs. TAIR 10
Match: AT2G36740.1 (sequence-specific DNA binding transcription factors;DNA binding;DNA binding )

HSP 1 Score: 119.4 bits (298), Expect = 3.3e-27
Identity = 85/189 (44.97%), Postives = 113/189 (59.79%), Query Frame = 0 

Query: 11  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSE 70
           VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ DE DSDF++
Sbjct: 10  VFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDSDFND 69

Query: 71  DVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKKRLVSPGKTSS 130
           D                             + EP+  A NE + R   KKRL+ PGKT+S
Sbjct: 70  D-----------------------------EPEPDAVAVNEKELRDLPKKRLIYPGKTAS 129

Query: 131 KDNNKK-RAVSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVR 190
           K   KK + VS++E     E   +E         E ++  +D E E+  +KSTRTS VVR
Sbjct: 130 KKKKKKTKVVSQLEYIPGDEKPGEELGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVR 169

Query: 191 EAERDVIRS 194
           +AERD +R+
Sbjct: 190 QAERDALRA 169

The following BLAST results are available for this feature:
BLAST of Carg08485 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035562.11.1e-98100.00SWR1 complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6605652.11.3e-7385.20SWR1 complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038907261.14.0e-5970.98SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907262.1 SWR1 compl... [more]
XP_038907266.14.0e-5970.98SWR1 complex subunit 2 isoform X2 [Benincasa hispida][more]
XP_022970136.16.4e-5769.95SWR1 complex subunit 2 [Cucurbita maxima] >XP_022970137.1 SWR1 complex subunit 2... [more]
BLAST of Carg08485 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4IP064.6e-2644.97SWR1 complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=SWC2 PE=1 SV=1[more]
BLAST of Carg08485 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HZS73.1e-5769.95SWR1 complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111469126 PE=3 SV=1[more]
A0A6J1EM843.1e-5769.95SWR1 complex subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111435683 PE=3 SV=1[more]
A0A6J1DZB86.9e-5769.43SWR1 complex subunit 2 OS=Momordica charantia OX=3673 GN=LOC111025980 PE=3 SV=1[more]
A0A5A7UJC34.5e-5669.95SWR1 complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A1S3CUJ87.6e-5669.95SWR1 complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504701 PE=3 SV=1[more]
BLAST of Carg08485 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G36740.13.3e-2744.97sequence-specific DNA binding transcription factors;DNA binding;DNA binding [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008895Vps72/YL1 familyPFAMPF05764YL1coord: 15..184
e-value: 9.7E-10
score: 39.0
IPR008895Vps72/YL1 familyPANTHERPTHR13275YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1coord: 3..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..199

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08485-RACarg08485-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043486 histone exchange
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006338 chromatin remodeling
cellular_component GO:0005634 nucleus