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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGACCCATGGACTAGGCAATCGTTGGATCACATTTCAAGTTTTTCCATTACAAAGAGAGCATTCAACGGGAAAAGGAGATGGAAGTAAACACCTAAAGGCCCCAATTAAATAAACAAAAAAATTTCATCTCAAATCACGAAGCAATCAGCTGCTGATTCAGAATAAATCCAATCCCCACAGGCCCCCATCTAAGCCACGAGGGTGCTGGCTGTGGTAGACTCGCTGCAGAGTGAAGGAGCAGAAATGTGAGTAAAACTTCTACATCATGATTGTGATTACCAACATGGATTTGAGAACCAACCAACCACAAATATGGTGCATTTTACTCTAGAAGTCTAGGTTTTTATACCCAAAAGACATTTACAATAGTAAGTTGGATGAATTTTACTCTCAAAATGTATTCTCAGGTTGGCATCTCAAAATGTATCATTAGTAATATACGACTTTTTTATTATACTTTTCCGAACAAGTTGTTCGGTATGAGTCAAATATGGACATGTCTCAATCTAAACTAAAGTGGATGTGCTTCATAGAGAAAGTGTCACAAGTCACATATATTATGAACTTATCTAAAAAGTTTATAAAGCAGGTACCTTTTGTCTAATACATCTCTTTAAATGAACTACCGAACACAACTATCACAGTACTACATGATTCAGAAATCTATTCAAGAACAGTTCATTGGAACGACATAAAATGCTGATTATACTGACAGAACTGTGCATTTCAAAATATACCAGCAGAAAATTCCATATTAATAACTAAGTAATTAATGGGCATGCATTTGAAAATAAGCGGTAAAAACTGAAAGCTAAGAACCCAACCTTTGGCAAGAATATATTGATATGCTATACATACTACAAGTGCGAAAAGCTACAAATCAAGAAGAGCAAGCCCAACTTACTATTTCCAGACGGGAGGAAGCTTCTTTGTTTTCTTGTAGTAACGAGCAAGCCTGTGAATTCTGCTCTCAACAAGAATCAAACGAAATTTGGAGTCCTTATCCTTCCTGTTCCTTTCCAAATGCTTCCTAATTGACACTGCCTTCTTAATAAGGTGGTATAAATCCTCGGGAATTTCAGGAGCAAGACCTACACACCAATTCAAGGAAATTCAAATAATCTGAATCCATACACTTCCACGATCAGCATCCAAAAATCTAAAATAAACATAAAACCGATCACAACGAATCCTTCCAATTATCTCACAATTTTCTGATTTCCCGAAACACATTGTTACACTATCGAAGAAAAAAAGATTGTACCGTGAGCCTTGAGAATTCGCAAAATCTTGCTTCCTGTAACGCTCTTGACCTGCGCTATACCATGGGAATCACGAAGAATAACGCCAATTTGTGACGGTGTAAGTCCCTTCTTCGCGAATTTGCAAATGTTCTCTCCTACCTGAAACCCAAACCAGTCAAAAATCCATTAACAAACACCGTCCAAATGCACATAGGGATTCTACACGGCAGTGAAACAGAAATGCACGATAGCAATTCATGCTCCTAAAGGAAAATTTTGCAGTATAATAAGGAAGAATCTTACATCTTGTGAAGAAATCTTCAGCCAACCTGGTGGAGTTCTCTTGTAAGGCAGCGCTGAGGCAGAAATACCCTTCCTATTGCAAACAAAACGCACAAAATCATAGTTAGCGATACCCAAATTAGCATAAAAACAAAGTTACACACACACATATATATATATATAGAGAGAGAGAGACCCACGGCTGTGCATGCGACCCATGGCGGCAACGACGGCGAAGATAGAAGTGCAATGGAGCTTCTTCAACCTCTTACTTTTGCACTATGCCAGAAACCCTAA mRNA sequence ATGACCCATGGACTAGGCAATCGTTGGATCACATTTCAAGTTTTTCCATTACAAAGAGAGCATTCAACGGGAAAAGGAGATGGAAAGAGAGAGAGACCCACGGCTGTGCATGCGACCCATGGCGGCAACGACGGCGAAGATAGAAGTGCAATGGAGCTTCTTCAACCTCTTACTTTTGCACTATGCCAGAAACCCTAA Coding sequence (CDS) ATGACCCATGGACTAGGCAATCGTTGGATCACATTTCAAGTTTTTCCATTACAAAGAGAGCATTCAACGGGAAAAGGAGATGGAAAGAGAGAGAGACCCACGGCTGTGCATGCGACCCATGGCGGCAACGACGGCGAAGATAGAAGTGCAATGGAGCTTCTTCAACCTCTTACTTTTGCACTATGCCAGAAACCCTAA Protein sequence MTHGLGNRWITFQVFPLQREHSTGKGDGKRERPTAVHATHGGNDGEDRSAMELLQPLTFALCQKP
Homology
BLAST of Carg08466 vs. NCBI nr
Match: KAG7035581.1 (hypothetical protein SDJN02_02378, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query: 1 MTHGLGNRWITFQVFPLQREHSTGKGDGKRERPTAVHATHGGNDGEDRSAMELLQPLTFA 60
MTHGLGNRWITFQVFPLQREHSTGKGDGKRERPTAVHATHGGNDGEDRSAMELLQPLTFA
Sbjct: 1 MTHGLGNRWITFQVFPLQREHSTGKGDGKRERPTAVHATHGGNDGEDRSAMELLQPLTFA 60
Query: 61 LCQKP 66
LCQKP
Sbjct: 61 LCQKP 65
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7035581.1 | 1.3e-30 | 100.00 | hypothetical protein SDJN02_02378, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 20..48 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 22..47 |
Relationships
The following mRNA feature(s) are a part of this gene:
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