Carg08452 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08452
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	MADS-box protein AGL42-like
Location	Carg_Chr02: 5617406 .. 5619019 (-)
RNA-Seq Expression	Carg08452
Synteny	Carg08452

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATACTTAAATTGTATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGTAAGCAATTTCAATCTTAATAACACTGCTTTTTAATAACATTCTAGGTTATGTTTTTGAATTTGTTCGTCTTAGGAAGCTGTTGGGACGTGGGTTGGATTCGTGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGGTATGTTTCTATTCTAGAACACCAAGGCCCTTTATCACATTGAATATCTCCTTTAGGGTTAGTAATGCTTCGCATATCATATTATGAAAAGATTAGTAGATTATGATATAAACCAAGCCATCTCAATCCTACAATATGAAATTTGAAGAAGTTGGGAAGAATATTGTTAGTTGTAATTAAAGTAACATCACGAAGAATCAAGCTTCATTTATGTAATAAGAATTTTAACTGGGACTTCATTTATTCTTAAATGGTTACAAATGGTCGATGAATAATTAAAATTTAGATTTATGGTGTTTAGTTAATGTATTTTAAGTTTTAAGACTTTTTTATTTACTTTTAGGTTGCATTTACGTAGTAGATAATTATGATTATGAAGTATGAAAGTTACCAAAAGTCAAAGGATTTGGTTTCATTTTGCGACTATATGAAATCCTTGATCTTCCCTGAGTCATCTCAAGAGTTGTGGAGTAATTCAAATCTTAGTTTCCCTTAAAGTCAGTTCTTGAATATTTTAGATCTAAACGTTTTATTTTGCAATAAAATTATTAGATCGAATTCTTAAGATGAAATCATCTTGATTCGGGAATTTTAATATTGTTAATCTAGAGATTTGTATATTTATAAAGGTTTTTAGATCCAATTGGTATGAATTTTTCATATCAGATTGGGTCGTTTTACGGGAGACTAAAAATATGTTAAAAAATTTCGTTTCATTACAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGTAATGAAATTTCATTGAAATATTTTCAGTTCATTCCTTTTCAATTTATTCTTTCTAGATTCAAATATGAGATATAAATAAATCGAAACGTCTAAACTCGTTCAGTTTTAAATGTTTTGGAGTTTAATTGATAGAATTATAAGCGTTCGTTAGAACGTAAACGGATTCGATATTTGTATATATGAAATTTAGCTAGTTGTTTATGTTGAATCAGGGGAAACTGCTTATAGAGGAAAATATAAAGTTAGCTGCAAAGGTAAGACCCCATTTTTCCCATTGTTGTTCTAGGGTTTAACGTTGTGAAGCTTGAAAATCCCTGTCGTTGTGGTTGGTCGTGTTGGACTGATATGTTTGTTCAAACATTTAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAGATGAGGGAGGAGGGATTATGAGTTTATTATGCACCCAAAATGCCCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGATCCAGTTCTAAACTTTTTACTACCATTTTAAGCCTTGCTCGTATAGAAATTCATTGATATAAGGAATGAAATGTAACCTTTATTTCA

mRNA sequence

ATGGAATACTTAAATTGTATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGAAGCTGTTGGGACGTGGGTTGGATTCGTGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGGGAAACTGCTTATAGAGGAAAATATAAAGTTAGCTGCAAAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAGATGAGGGAGGAGGGATTATGAGTTTATTATGCACCCAAAATGCCCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGATCCAGTTCTAAACTTTTTACTACCATTTTAAGCCTTGCTCGTATAGAAATTCATTGATATAAGGAATGAAATGTAACCTTTATTTCA

Coding sequence (CDS)

ATGGAATACTTAAATTGTATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGAAGCTGTTGGGACGTGGGTTGGATTCGTGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGGGAAACTGCTTATAGAGGAAAATATAAAGTTAGCTGCAAAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAGATGAGGGAGGAGGGATTATGAGTTTATTATGCACCCAAAATGCCCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGA

Protein sequence

MEYLNCMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTKLFIGLPCS

Homology

[Close]

BLAST of Carg08452 vs. NCBI nr
Match: KAG7035595.1 (MADS-box protein AGL42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.8 bits (665), Expect = 6.6e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEYLNCMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRE 60
           MEYLNCMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRE
Sbjct: 1   MEYLNCMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRE 60

Query: 61  RKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQP 120
           RKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQP
Sbjct: 61  RKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQP 120

Query: 121 SHINTKLFIGLPCS 135
           SHINTKLFIGLPCS
Sbjct: 121 SHINTKLFIGLPCS 134

[Close]

BLAST of Carg08452 vs. NCBI nr
Match: KAG6605687.1 (MADS-box protein AGL42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.3 bits (630), Expect = 7.6e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF
Sbjct: 87  MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK
Sbjct: 147 KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 206

Query: 127 LFIGLPCS 135
           LFIGLPCS
Sbjct: 207 LFIGLPCS 214

[Close]

BLAST of Carg08452 vs. NCBI nr
Match: XP_023532454.1 (MADS-box protein AGL42-like [Cucurbita pepo subsp. pepo] >XP_023532455.1 MADS-box protein AGL42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.3 bits (630), Expect = 7.6e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF
Sbjct: 87  MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK
Sbjct: 147 KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 206

Query: 127 LFIGLPCS 135
           LFIGLPCS
Sbjct: 207 LFIGLPCS 214

[Close]

BLAST of Carg08452 vs. NCBI nr
Match: XP_022995310.1 (MADS-box protein AGL42-like [Cucurbita maxima])

HSP 1 Score: 242.7 bits (618), Expect = 1.9e-60
Identity = 126/128 (98.44%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF
Sbjct: 87  MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGG IMSLLCTQN QPSHINTK
Sbjct: 147 KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGWIMSLLCTQNGQPSHINTK 206

Query: 127 LFIGLPCS 135
           LFIGLPCS
Sbjct: 207 LFIGLPCS 214

[Close]

BLAST of Carg08452 vs. NCBI nr
Match: XP_022957636.1 (MADS-box protein AGL42-like [Cucurbita moschata])

HSP 1 Score: 242.7 bits (618), Expect = 1.9e-60
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQQMKQEADMTAKKMEQLETSQKKLLGRGL SCSLEEIREIETQLILSLTRIRERKSQLF
Sbjct: 87  MQQMKQEADMTAKKMEQLETSQKKLLGRGLGSCSLEEIREIETQLILSLTRIRERKSQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGE+EGGGIMSLLCTQNAQPSHINTK
Sbjct: 147 KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGENEGGGIMSLLCTQNAQPSHINTK 206

Query: 127 LFIGLPCS 135
           LFIGLPCS
Sbjct: 207 LFIGLPCS 214

[Close]

BLAST of Carg08452 vs. ExPASy Swiss-Prot
Match: O64645 (MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-18
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQ +K EA    KK+EQLE S++KLLG G+ +CS+EE+++IE QL  S+  IR RK+Q+F
Sbjct: 87  MQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQ  +L +K K L  EN KL+ K G+   E       E  G       +++  S + T+
Sbjct: 147 KEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSNKNQESTGRGD---EESSPSSEVETQ 206

Query: 127 LFIGLPCS 135
           LFIGLPCS
Sbjct: 207 LFIGLPCS 211

[Close]

BLAST of Carg08452 vs. ExPASy Swiss-Prot
Match: Q9FIS1 (MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-18
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           +QQ+KQEA     K+E LE  ++KLLG+G+ SCSLEE++EI++QL  SL ++RERK+QLF
Sbjct: 87  LQQLKQEASHMITKIELLEFHKRKLLGQGIASCSLEELQEIDSQLQRSLGKVRERKAQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQ  KL  K K L+EEN+KL  K    PW   G   D+      ++         + T 
Sbjct: 147 KEQLEKLKAKEKQLLEENVKLHQKNVINPW--RGSSTDQQQEKYKVIDLN----LEVETD 206

Query: 127 LFIGLP 133
           LFIGLP
Sbjct: 207 LFIGLP 206

[Close]

BLAST of Carg08452 vs. ExPASy Swiss-Prot
Match: Q9LT93 (MADS-box protein AGL71 OS=Arabidopsis thaliana OX=3702 GN=AGL71 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-13
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           +Q++K E D   KK++ LE   +KLLG+GLDSCS+ E++EI+TQ+  SL  +R RK++L+
Sbjct: 88  LQELKMEIDRMVKKIDLLEVHHRKLLGQGLDSCSVTELQEIDTQIEKSLRIVRSRKAELY 147

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
            +Q  KL EK + L+ E  +L  +           G  EGG        +    S + T 
Sbjct: 148 ADQLKKLKEKERELLNERKRLLEEVN---MHHSSKGNTEGG-------HRTKHSSEVETD 203

Query: 127 LFIGLP 133
           LFIGLP
Sbjct: 208 LFIGLP 203

[Close]

BLAST of Carg08452 vs. ExPASy Swiss-Prot
Match: Q9XJ60 (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-13
Identity = 54/129 (41.86%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           ++Q+K +AD  AKK+E LET ++KLLG  LD CS+EE+  +E +L  SL  IR RK++L 
Sbjct: 86  IEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLL 145

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQP---WEAEGGGEDEGGGIMSLLCTQNAQPSHI 126
           +EQ  KL EK   L ++N +L  KC  QP          EDE           N     +
Sbjct: 146 EEQVAKLREKEMKLRKDNEELREKCKNQPPLSAPLTVRAEDENPDRNINTTNDNMD---V 205

Query: 127 NTKLFIGLP 133
            T+LFIGLP
Sbjct: 206 ETELFIGLP 211

[Close]

BLAST of Carg08452 vs. ExPASy Swiss-Prot
Match: Q38838 (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 7.5e-12
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 8   QQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLFK 67
           QQ K E    A+K+E LE S +K++G GLD+ S+EE++++E QL  SL +IR +K QL +
Sbjct: 88  QQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLR 147

Query: 68  EQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNA--------Q 127
           E+  KL EK + LI EN  L  KC           E +G GI+  + + ++         
Sbjct: 148 EETEKLKEKERNLIAENKMLMEKC-----------EMQGRGIIGRISSSSSTSELDIDDN 207

Query: 128 PSHINTKLFIGLP 133
              + T LFIG P
Sbjct: 208 EMEVVTDLFIGPP 209

[Close]

BLAST of Carg08452 vs. ExPASy TrEMBL
Match: A0A6J1K3R0 (MADS-box protein AGL42-like OS=Cucurbita maxima OX=3661 GN=LOC111490892 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.0e-61
Identity = 126/128 (98.44%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF
Sbjct: 87  MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGG IMSLLCTQN QPSHINTK
Sbjct: 147 KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGWIMSLLCTQNGQPSHINTK 206

Query: 127 LFIGLPCS 135
           LFIGLPCS
Sbjct: 207 LFIGLPCS 214

[Close]

BLAST of Carg08452 vs. ExPASy TrEMBL
Match: A0A6J1GZS6 (MADS-box protein AGL42-like OS=Cucurbita moschata OX=3662 GN=LOC111459110 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.0e-61
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQQMKQEADMTAKKMEQLETSQKKLLGRGL SCSLEEIREIETQLILSLTRIRERKSQLF
Sbjct: 87  MQQMKQEADMTAKKMEQLETSQKKLLGRGLGSCSLEEIREIETQLILSLTRIRERKSQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGE+EGGGIMSLLCTQNAQPSHINTK
Sbjct: 147 KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGENEGGGIMSLLCTQNAQPSHINTK 206

Query: 127 LFIGLPCS 135
           LFIGLPCS
Sbjct: 207 LFIGLPCS 214

[Close]

BLAST of Carg08452 vs. ExPASy TrEMBL
Match: A0A6J1I2F0 (MADS-box protein AGL42-like OS=Cucurbita maxima OX=3661 GN=LOC111468993 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.1e-41
Identity = 98/128 (76.56%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQQMKQEA+MTAKK+E+LE SQKKLLGRGLDSCS EE+REIE QLILSLTRIRERK+ LF
Sbjct: 87  MQQMKQEAEMTAKKIEELEKSQKKLLGRGLDSCSFEEVREIEKQLILSLTRIRERKALLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQ+ KLIEKGKLLIEEN KL+AKCGT+PWE E  G +  GGIMS LC+Q+ Q S I T+
Sbjct: 147 KEQKEKLIEKGKLLIEENKKLSAKCGTKPWEQE--GIEAEGGIMS-LCSQSRQGSDIQTE 206

Query: 127 LFIGLPCS 135
           LFIGL CS
Sbjct: 207 LFIGLSCS 211

[Close]

BLAST of Carg08452 vs. ExPASy TrEMBL
Match: A0A0A0KL39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172800 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.1e-40
Identity = 95/132 (71.97%), Postives = 111/132 (84.09%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQQ+KQEA+MTAKK+EQLE SQ+KLLGRGLDSCS EEIREIE QL+LSLTRIRE K+QLF
Sbjct: 87  MQQLKQEAEMTAKKIEQLEKSQQKLLGRGLDSCSFEEIREIERQLVLSLTRIRETKAQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQ--NAQPS--H 126
           KEQ+ KLIEKGKLL+EEN+KL+AKCGT+PW+ EG   D G  +MS LC+Q  N+Q S  H
Sbjct: 147 KEQKEKLIEKGKLLLEENLKLSAKCGTKPWQEEGVEGDGGINMMSNLCSQSTNSQASDHH 206

Query: 127 INTKLFIGLPCS 135
           + T LFIGL CS
Sbjct: 207 MQTDLFIGLSCS 218

[Close]

BLAST of Carg08452 vs. ExPASy TrEMBL
Match: A0A6J1EST4 (MADS-box protein AGL42-like OS=Cucurbita moschata OX=3662 GN=LOC111435678 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.8e-40
Identity = 96/128 (75.00%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQQM+QEA+MTAKK+E+LE SQKKLLGRGLDSCS EE+REIE QLILSLTRIRE K+ LF
Sbjct: 87  MQQMEQEAEMTAKKIEELEKSQKKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQ+ KLIEKGKLLIEEN KL+AKCGT+PWE   GG +  GGIMS LC+Q+ Q S I T+
Sbjct: 147 KEQKEKLIEKGKLLIEENKKLSAKCGTKPWEQ--GGIEAEGGIMS-LCSQSRQGSDIQTE 206

Query: 127 LFIGLPCS 135
           LFIGL CS
Sbjct: 207 LFIGLSCS 211

[Close]

BLAST of Carg08452 vs. TAIR 10
Match: AT2G45660.1 (AGAMOUS-like 20 )

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           MQ +K EA    KK+EQLE S++KLLG G+ +CS+EE+++IE QL  S+  IR RK+Q+F
Sbjct: 87  MQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQ  +L +K K L  EN KL+ K G+   E       E  G       +++  S + T+
Sbjct: 147 KEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSNKNQESTGRGD---EESSPSSEVETQ 206

Query: 127 LFIGLPCS 135
           LFIGLPCS
Sbjct: 207 LFIGLPCS 211

[Close]

BLAST of Carg08452 vs. TAIR 10
Match: AT5G62165.1 (AGAMOUS-like 42 )

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-19
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           +QQ+KQEA     K+E LE  ++KLLG+G+ SCSLEE++EI++QL  SL ++RERK+QLF
Sbjct: 87  LQQLKQEASHMITKIELLEFHKRKLLGQGIASCSLEELQEIDSQLQRSLGKVRERKAQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQ  KL  K K L+EEN+KL  K    PW   G   D+      ++         + T 
Sbjct: 147 KEQLEKLKAKEKQLLEENVKLHQKNVINPW--RGSSTDQQQEKYKVIDLN----LEVETD 206

Query: 127 LFIGLP 133
           LFIGLP
Sbjct: 207 LFIGLP 206

[Close]

BLAST of Carg08452 vs. TAIR 10
Match: AT5G62165.2 (AGAMOUS-like 42 )

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-19
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           +QQ+KQEA     K+E LE  ++KLLG+G+ SCSLEE++EI++QL  SL ++RERK+QLF
Sbjct: 87  LQQLKQEASHMITKIELLEFHKRKLLGQGIASCSLEELQEIDSQLQRSLGKVRERKAQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQ  KL  K K L+EEN+KL  K    PW   G   D+      ++         + T 
Sbjct: 147 KEQLEKLKAKEKQLLEENVKLHQKNVINPW--RGSSTDQQQEKYKVIDLN----LEVETD 206

Query: 127 LFIGLP 133
           LFIGLP
Sbjct: 207 LFIGLP 206

[Close]

BLAST of Carg08452 vs. TAIR 10
Match: AT5G62165.3 (AGAMOUS-like 42 )

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-19
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 7   MQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLF 66
           +QQ+KQEA     K+E LE  ++KLLG+G+ SCSLEE++EI++QL  SL ++RERK+QLF
Sbjct: 87  LQQLKQEASHMITKIELLEFHKRKLLGQGIASCSLEELQEIDSQLQRSLGKVRERKAQLF 146

Query: 67  KEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTK 126
           KEQ  KL  K K L+EEN+KL  K    PW   G   D+      ++         + T 
Sbjct: 147 KEQLEKLKAKEKQLLEENVKLHQKNVINPW--RGSSTDQQQEKYKVIDLN----LEVETD 206

Query: 127 LFIGLP 133
           LFIGLP
Sbjct: 207 LFIGLP 206

[Close]

BLAST of Carg08452 vs. TAIR 10
Match: AT5G62165.5 (AGAMOUS-like 42 )

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-15
Identity = 54/120 (45.00%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 17  TAKKMEQLETSQK----KLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLFKEQRMK 76
           T K M+   T+ K    KLLG+G+ SCSLEE++EI++QL  SL ++RERK+QLFKEQ  K
Sbjct: 40  TQKIMKPAITTHKFTCRKLLGQGIASCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEK 99

Query: 77  LIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTKLFIGLP 133
           L  K K L+EEN+KL  K    PW   G   D+      ++         + T LFIGLP
Sbjct: 100 LKAKEKQLLEENVKLHQKNVINPW--RGSSTDQQQEKYKVIDLN----LEVETDLFIGLP 153

The following BLAST results are available for this feature:

BLAST of Carg08452 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035595.1	6.6e-66	100.00	MADS-box protein AGL42, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605687.1	7.6e-62	100.00	MADS-box protein AGL42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023532454.1	7.6e-62	100.00	MADS-box protein AGL42-like [Cucurbita pepo subsp. pepo] >XP_023532455.1 MADS-bo...	[more]
XP_022995310.1	1.9e-60	98.44	MADS-box protein AGL42-like [Cucurbita maxima]	[more]
XP_022957636.1	1.9e-60	98.44	MADS-box protein AGL42-like [Cucurbita moschata]	[more]

BLAST of Carg08452 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64645	2.4e-18	45.31	MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1	[more]
Q9FIS1	3.1e-18	46.83	MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1	[more]
Q9LT93	3.0e-13	38.89	MADS-box protein AGL71 OS=Arabidopsis thaliana OX=3702 GN=AGL71 PE=2 SV=1	[more]
Q9XJ60	3.0e-13	41.86	MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q38838	7.5e-12	37.59	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=...	[more]

BLAST of Carg08452 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3R0	9.0e-61	98.44	MADS-box protein AGL42-like OS=Cucurbita maxima OX=3661 GN=LOC111490892 PE=4 SV=...	[more]
A0A6J1GZS6	9.0e-61	98.44	MADS-box protein AGL42-like OS=Cucurbita moschata OX=3662 GN=LOC111459110 PE=4 S...	[more]
A0A6J1I2F0	6.1e-41	76.56	MADS-box protein AGL42-like OS=Cucurbita maxima OX=3661 GN=LOC111468993 PE=4 SV=...	[more]
A0A0A0KL39	5.1e-40	71.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172800 PE=4 SV=1	[more]
A0A6J1EST4	8.8e-40	75.00	MADS-box protein AGL42-like OS=Cucurbita moschata OX=3662 GN=LOC111435678 PE=4 S...	[more]

BLAST of Carg08452 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45660.1	1.7e-19	45.31	AGAMOUS-like 20	[more]
AT5G62165.1	2.2e-19	46.83	AGAMOUS-like 42	[more]
AT5G62165.2	2.2e-19	46.83	AGAMOUS-like 42	[more]
AT5G62165.3	2.2e-19	46.83	AGAMOUS-like 42	[more]
AT5G62165.5	4.3e-15	45.00	AGAMOUS-like 42	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 7..27
None	No IPR available	PANTHER	PTHR11945:SF488	MADS-BOX TRANSCRIPTION FACTOR 56	coord: 11..132
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 11..132
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 8..91 e-value: 2.7E-18 score: 65.9
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 7..97 score: 12.630369

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08452-RA	Carg08452-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009838	abscission
biological_process	GO:0080187	floral organ senescence
biological_process	GO:0010150	leaf senescence
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity