Carg08349 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08349
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr05: 3573317 .. 3573942 (+)
RNA-Seq Expression	Carg08349
Synteny	Carg08349

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCTAGTTCAGTACCATCCTTCGTCTTGTGTTTCCATTCCGATTCAACAACATCCTCGTCGGAATCCTCAACTTCATCACCATCTTACTTTCCATCCCGATTCTCCGGGCCCGCGTTTGGCTGAGCAAACAAGAAAGCACCGGTCCGGTGGTATCGCGATGATAAGGAGTTACTCGAACGGATTTTATATATGTTTAATCGGTTTGAATTTTTCATTAATTTTCTTCAAATTACATTTGATATTGGTTAATACAAATACTCATCTCTTTAGAATTTGGACGGTAGCTTGTATCTCAGTGAACATTAATAAACATAACACTTTCAATCTCACTTACGTTTCTTATTCTTAACATGGTACCACAGCTTTTCATTTTTAACAGCAGTATAGATTTGGGATTACTCGAGTTGGCTGTCGAATGTCGAAGTAGGTGAATGAGGGTGAATGAGCGGCTTGATTGATGGGGAAGATCTGTTCCAGCTTTGATCGATGAGAATGAATTCGAGTTTTGTGGAACTTGTTTTATGTTAGAAGTAAAACCTAGTTGTTTGAATTTCGTTTGAATTTCGTTTATGTTTCAAGTTTCAACTTGAATCTTTGTTTTGAATTGCAGATCTATTCGATTGA

mRNA sequence

GCTCTAGTTCAGTACCATCCTTCGTCTTGTGTTTCCATTCCGATTCAACAACATCCTCGTCGGAATCCTCAACTTCATCACCATCTTACTTTCCATCCCGATTCTCCGGGCCCGCGTTTGGCTGAGCAAACAAGAAAGCACCGGTCCGGTGATCTATTCGATTGA

Coding sequence (CDS)

GCTCTAGTTCAGTACCATCCTTCGTCTTGTGTTTCCATTCCGATTCAACAACATCCTCGTCGGAATCCTCAACTTCATCACCATCTTACTTTCCATCCCGATTCTCCGGGCCCGCGTTTGGCTGAGCAAACAAGAAAGCACCGGTCCGGTGATCTATTCGATTGA

Protein sequence

ALVQYHPSSCVSIPIQQHPRRNPQLHHHLTFHPDSPGPRLAEQTRKHRSGDLFD

Homology

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BLAST of Carg08349 vs. NCBI nr
Match: KAG7029784.1 (hypothetical protein SDJN02_08127, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  ALVQYHPSSCVSIPIQQHPRRNPQLHHHLTFHPDSPGPRLAEQTRKHRSGDLFD 55
          ALVQYHPSSCVSIPIQQHPRRNPQLHHHLTFHPDSPGPRLAEQTRKHRSGDLFD
Sbjct: 1  ALVQYHPSSCVSIPIQQHPRRNPQLHHHLTFHPDSPGPRLAEQTRKHRSGDLFD 54

The following BLAST results are available for this feature:

BLAST of Carg08349 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029784.1	5.6e-24	100.00	hypothetical protein SDJN02_08127, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg08349 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08349 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08349 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08349-RA	Carg08349-RA	mRNA