Carg08264 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08264
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA polymerase sigma factor sigC-like
Location	Carg_Chr05: 3024458 .. 3028752 (+)
RNA-Seq Expression	Carg08264
Synteny	Carg08264

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAATTCTTAGAAGAAGGAGATTTAGAATTGGTGGTAGAGAATTTGCAGTTTCCACGTCCACATTTTCACTCATCAGATTGCATGAGTAATTACTTCTTCATCACCAATCTTCTCCCTCTCACTGCCTCCGATTTCCACGATGGGAACGAGTTTCCGCCCAAATCTCAAGTGGGCTTTCCAAATTCAGACTCATTCCCGCCGGGCCTCCCCTTCCAAGCTCTCTCCCTATGCCTGTTAGTTCTTTCTCTCTGAACTAAGATGCTGAATCATGAACAATCTCGATTCATATCTGGGTTTTTAATTTGTTTCTGAAATTCCGTGGGTTCCCGCTTGCTCTTTGTTCGGTTTTCTCGTTTTTAATCTGCCATTGTTCTACTTGTTATCGATTTTGCGTGGCATTTTGAATTGTTTTCCGATTATCTCGATCATTTGAATAAGGAACGTTTCTGGGATTTCTCCGGAATTTTGTGTTCTTGCTCCTGAATGATTATAATTTATATATATATATCTGTTACATTTCCTGAATGTGAAGTTTTGAGTCTTTTGGAGACTGTTAGGCTCTGAAATTTCTCCTGGAATGGTTATGGAGTGTGAATATTCGATCTATATTTAATTTCTTTGGATTAGACTGAGAAAAGCCTCATTTCTTAGCATGTTTTAAGGTTATACGATGATTATTGGCGTTGGGAATGCATTATAAATTTTGTTCTGTTCTACATTTTAAAACAGCTAAAGGCAGGGAAGCTTCCTTTAATTCGGGAAGGCTTTCGTTCTTCTCCAGTACTTGTGAGGAAGGAGAGGCTATTTCTAGAGAAGCCTTGAAAACATACACTTGCTTGTCTGAAGCTCCACAAACCTTAGCCGATGGTCTGTTAGATTTGGAAGAGAAAGAGATAGAGGTAAGCCCTTTGCAATGAACTTCACAACACCCATTTGTAGGCCTTGACCTCGCTTGGTTTCTTGTTCTTGATTGGATGTATCTTATATGTTATTTCAGATAAACAGTGGGGCAAAGTCACTCGGTCATTTGCGTTACGGGTCGAAAAATTCTGGGCCATCCAAGGTAGAGGACAATTTTTGTTCCTGTACGAGCTTGCCTACTGGCAGGGCGTCGCCTTTTGGCATGTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTAAGCTTGGAAAGAGATATCCTATTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTTAATGCCTGTCTATCTAGGACGCTTAAAGCATCATCAAGTTTTCATGATTTGTCGGACTTACCTATTGAGGTTGGTGGAGATCATAATGTAAACCAGAAAACCGATGACCAAAACGACAATATCGTAGTTTACTCTGGAAAAAGAGCAGGAAGAAGATCAGTAAAAAGGAGAGCAATGGATAATGCTGATAAAGTTGCTTCACGGCCGCTAGCTACAAGAGCTGCTAAAGAAAAATTCCGTAGTTTGAGGAAAAAAGCATCTAATTCGAAAAAAAGAAGATCGATTGTTGCGCGAAATGAAGCTGAAATGTCCACCGGGGTTAAGGTTGATTCGTGTTTGATGTTCGCACAACCATCCTTCCAATACTTTTTATGCTAAGCTTCTGTTTCATTGCAGGTAGTTGCAAATTTAGAAAGAATTAGAGAAACTTTAGAAAAAGAATCCGGAAGAACAGCAAGCATGAGTTGCTGGGCCGACGCAGCCAGCATTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGCTGGTTCTGCCAGGATGAGCTCTTAAGGAGCACGAATTCATTGGTTATATTCCTTGCAAAGAAATATCGATGCTCCGGGTTACCAATGGAGGACTTGGTTCAGGTCTATTCATTACTATTCTACGAGAAACCTCGGTCCTTCGAATTTCAATATATATATATACACACACACATACGTACTCCACTTTCTTTTTTGCTTTCATGAATGCAAATTTTGAATACTGATGCCTTGCCTTGAAACATACATTTCTCAATAGAAGTATAGTAAGAAAAATGCAAGGCGCTATGCATCTTGATGTTTATTTTCTCGTGTACTCGTAGGCAGGAGCCATTGGCGTGCTGCAAGGTGTGGAAAGGTTTGACCCGAAAAGGGGTTTTAGATTCTCAACCTATATTCAATACTGGATAAGGAAATCAATGTCGAGAGTCGTGGCACGAAGTTCAAGGGGAATTCAAATTCCAGTACGATTCTTTCTTCACTGGGAGGCTAATTTCATGAAGTTTTCATATTCATGTATGACTGACTCATCCTTATAAATTCTTTTGTAGTGGTCATTAACCAAGGCAATAAATCAAATACAGAAGGCTCGAAAAGCGTTGAACAACAGTGGTAGGAGATATTCGGATGACGATATAGCCAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCTAGCAACTGTTTAAAAGTTGTGGGTTCAGTTGATCAGAAGATAGGTGATGGACTAAATATGAAATATATGGTAAGACTCTCTCGCTCTTCCGTCTAGGATATCATTAGCTCCCCATTTTCTTTGAACTTCTTGACAATTCTTGGGCATATTTTGTCTATGTTGATTAATTGAGAGCTTTTTCTTTTTCTTTTACTGAAGTTTGTTCATCAAAAGCTTATATATGAATTCATAATTGGCATGCATGTGTGAAGTCGAGCTATGTGAGGTCCTACATCGGTTGGATAGGTGAACGAAACATTTTTTATAAGGGTGTGGAAATCTCTCCTCAGTAGACACGCTTTAAAATTTTGAAGGGAAGCTTGGAAAAGAAAGCCCAAAAAGACAATATTGGCTAGCGGTGAGCTTGGACTGTTACAAATGGTATCAAAGCCAGATATTAGGCAGTGTGCTAACGAGGACATTGGGCTTTGAAGGGGGGTGGATTGAGAGATCTCATATTGGTTGGAGAGGTGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAATAGACACGTTTTAAAACTTTGAGGAAAAGCCCAAAAATGACAATACTTGCTAGCGGTGGGTTTGAGCTTGAGCTGTTATAAGCTATTTTGAAAATAGCAAGTTTAGAATATCCCGGCCTTCTACTAGATGTTACAACTTACCAATAAATTAATATAGTATATTCTTTAAACGAATTGTGACTCTTATGGTGCAGGAATTGACAGCAGATACATCAATAGAGAGCCCAGAAGACACTGTGAAGCGGAGACTAATGAAGAAAGACATCTTTAATCTTCTTGAAGTGTTGGAATCAAGGGAGAGACAGGTCCTGGTGCTGAGATACGGACTCATGGATTCCCAACCCAAGTCGCTCGAGGAAATTGGAAAACTTCTGTGCGTAAGTAAGGAATGGGTTCGAAAAATCGAAAGGAAAGCCACAACAAAGCTTAAAAATGAAGAGACTGTGAGAAACTTGAGCCATTATTTGGATTGATATACATCTTTCAGCTTCAGCTCCCTCCAGTCTTTTCAAAACTTGCAGCAGCCCAAAGAAGCCAAGAGATTGGCATCGCGCTTTCGGGCCATACTACCAAAGTGTTCGTTACAACAAGCATATCTCTATCCTCGACGACTCTCACCGGTTAGTACAGTTCCTTACATGATGCATTACCACTGAAACATCGACTCGACTCGTCTGGTTGATAGTTCATGTTTTTTGATGTAAAATATGATCTTTACTTCCATCATATGCATGAATTGAGCTGTAGATAGAGATGTGCACCTGGGCATGGCCAAACCTTCCATATATATATAAACATATATACATATTTACAGCCATTTTTAGCCATATGAGTCCACATTGTATTAAATTTTATTTCATATACAGGGCAATTCATGCCATTGTTGTAGAGATGGATGTCTGGACGATCATAGTAGATTTATTAATACCAAGTTTATGACTTTTCATGCATTTCTTAGCTGATAAGAAACTTGAGGGATCATACAATACTTTACTTTCTTTAGAAGAAATGGAACAAATGAGCTGAGAAGACAAATCTGTTTGGTTTTACAACTTTGGTAAAAGCATATGCTTTTTTCTCTGCTCTGAATTGAATGCTCTAATTTATTGTCATCAACTGCTTTTCTTGATGGAGGGGAAAGCTACAACGACGTATAACGTATATTCTTTATTCTAAGGTCGGAGATTCAAACGTCTTGTACTTCTAATTGATTGTTCTTTTTTAAGTCTTCATTTGCGATATAATATTTCTTTGACGAATAACTTTTTATGACGATGGTGAGAGGTCTATAGCATTTACC

mRNA sequence

CCCAAATTCTTAGAAGAAGGAGATTTAGAATTGGTGGTAGAGAATTTGCAGTTTCCACGTCCACATTTTCACTCATCAGATTGCATGAGTAATTACTTCTTCATCACCAATCTTCTCCCTCTCACTGCCTCCGATTTCCACGATGGGAACGAGTTTCCGCCCAAATCTCAAGTGGGCTTTCCAAATTCAGACTCATTCCCGCCGGGCCTCCCCTTCCAAGCTCTCTCCCTATGCCTCTAAAGGCAGGGAAGCTTCCTTTAATTCGGGAAGGCTTTCGTTCTTCTCCAGTACTTGTGAGGAAGGAGAGGCTATTTCTAGAGAAGCCTTGAAAACATACACTTGCTTGTCTGAAGCTCCACAAACCTTAGCCGATGGTCTGTTAGATTTGGAAGAGAAAGAGATAGAGATAAACAGTGGGGCAAAGTCACTCGGTCATTTGCGTTACGGGTCGAAAAATTCTGGGCCATCCAAGGTAGAGGACAATTTTTGTTCCTGTACGAGCTTGCCTACTGGCAGGGCGTCGCCTTTTGGCATGTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTAAGCTTGGAAAGAGATATCCTATTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTTAATGCCTGTCTATCTAGGACGCTTAAAGCATCATCAAGTTTTCATGATTTGTCGGACTTACCTATTGAGGTTGGTGGAGATCATAATGTAAACCAGAAAACCGATGACCAAAACGACAATATCGTAGTTTACTCTGGAAAAAGAGCAGGAAGAAGATCAGTAAAAAGGAGAGCAATGGATAATGCTGATAAAGTTGCTTCACGGCCGCTAGCTACAAGAGCTGCTAAAGAAAAATTCCGTAGTTTGAGGAAAAAAGCATCTAATTCGAAAAAAAGAAGATCGATTGTTGCGCGAAATGAAGCTGAAATGTCCACCGGGGTTAAGGTAGTTGCAAATTTAGAAAGAATTAGAGAAACTTTAGAAAAAGAATCCGGAAGAACAGCAAGCATGAGTTGCTGGGCCGACGCAGCCAGCATTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGCTGGTTCTGCCAGGATGAGCTCTTAAGGAGCACGAATTCATTGGTTATATTCCTTGCAAAGAAATATCGATGCTCCGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCATTGGCGTGCTGCAAGGTGTGGAAAGGTTTGACCCGAAAAGGGGTTTTAGATTCTCAACCTATATTCAATACTGGATAAGGAAATCAATGTCGAGAGTCGTGGCACGAAGTTCAAGGGGAATTCAAATTCCATGGTCATTAACCAAGGCAATAAATCAAATACAGAAGGCTCGAAAAGCGTTGAACAACAGTGGTAGGAGATATTCGGATGACGATATAGCCAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCTAGCAACTGTTTAAAAGTTGTGGGTTCAGTTGATCAGAAGATAGGTGATGGACTAAATATGAAATATATGGAATTGACAGCAGATACATCAATAGAGAGCCCAGAAGACACTGTGAAGCGGAGACTAATGAAGAAAGACATCTTTAATCTTCTTGAAGTGTTGGAATCAAGGGAGAGACAGGTCCTGGTGCTGAGATACGGACTCATGGATTCCCAACCCAAGTCGCTCGAGGAAATTGGAAAACTTCTGTGCGTAAGTAAGGAATGGGTTCGAAAAATCGAAAGGAAAGCCACAACAAAGCTTAAAAATGAAGAGACTGTGAGAAACTTGAGCCATTATTTGGATTGATATACATCTTTCAGCTTCAGCTCCCTCCAGTCTTTTCAAAACTTGCAGCAGCCCAAAGAAGCCAAGAGATTGGCATCGCGCTTTCGGGCCATACTACCAAAGTGTTCGTTACAACAAGCATATCTCTATCCTCGACGACTCTCACCGGTTAGTACAGTTCCTTACATGATGCATTACCACTGAAACATCGACTCGACTCGTCTGGTTGATAGTTCATGTTTTTTGATGTAAAATATGATCTTTACTTCCATCATATGCATGAATTGAGCTGTAGATAGAGATGTGCACCTGGGCATGGCCAAACCTTCCATATATATATAAACATATATACATATTTACAGCCATTTTTAGCCATATGAGTCCACATTGTATTAAATTTTATTTCATATACAGGGCAATTCATGCCATTGTTGTAGAGATGGATGTCTGGACGATCATAGTAGATTTATTAATACCAAGTTTATGACTTTTCATGCATTTCTTAGCTGATAAGAAACTTGAGGGATCATACAATACTTTACTTTCTTTAGAAGAAATGGAACAAATGAGCTGAGAAGACAAATCTGTTTGGTTTTACAACTTTGGTAAAAGCATATGCTTTTTTCTCTGCTCTGAATTGAATGCTCTAATTTATTGTCATCAACTGCTTTTCTTGATGGAGGGGAAAGCTACAACGACGTATAACGTATATTCTTTATTCTAAGGTCGGAGATTCAAACGTCTTGTACTTCTAATTGATTGTTCTTTTTTAAGTCTTCATTTGCGATATAATATTTCTTTGACGAATAACTTTTTATGACGATGGTGAGAGGTCTATAGCATTTACC

Coding sequence (CDS)

ATGGGAACGAGTTTCCGCCCAAATCTCAAGTGGGCTTTCCAAATTCAGACTCATTCCCGCCGGGCCTCCCCTTCCAAGCTCTCTCCCTATGCCTCTAAAGGCAGGGAAGCTTCCTTTAATTCGGGAAGGCTTTCGTTCTTCTCCAGTACTTGTGAGGAAGGAGAGGCTATTTCTAGAGAAGCCTTGAAAACATACACTTGCTTGTCTGAAGCTCCACAAACCTTAGCCGATGGTCTGTTAGATTTGGAAGAGAAAGAGATAGAGATAAACAGTGGGGCAAAGTCACTCGGTCATTTGCGTTACGGGTCGAAAAATTCTGGGCCATCCAAGGTAGAGGACAATTTTTGTTCCTGTACGAGCTTGCCTACTGGCAGGGCGTCGCCTTTTGGCATGTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTAAGCTTGGAAAGAGATATCCTATTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTTAATGCCTGTCTATCTAGGACGCTTAAAGCATCATCAAGTTTTCATGATTTGTCGGACTTACCTATTGAGGTTGGTGGAGATCATAATGTAAACCAGAAAACCGATGACCAAAACGACAATATCGTAGTTTACTCTGGAAAAAGAGCAGGAAGAAGATCAGTAAAAAGGAGAGCAATGGATAATGCTGATAAAGTTGCTTCACGGCCGCTAGCTACAAGAGCTGCTAAAGAAAAATTCCGTAGTTTGAGGAAAAAAGCATCTAATTCGAAAAAAAGAAGATCGATTGTTGCGCGAAATGAAGCTGAAATGTCCACCGGGGTTAAGGTAGTTGCAAATTTAGAAAGAATTAGAGAAACTTTAGAAAAAGAATCCGGAAGAACAGCAAGCATGAGTTGCTGGGCCGACGCAGCCAGCATTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGCTGGTTCTGCCAGGATGAGCTCTTAAGGAGCACGAATTCATTGGTTATATTCCTTGCAAAGAAATATCGATGCTCCGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCATTGGCGTGCTGCAAGGTGTGGAAAGGTTTGACCCGAAAAGGGGTTTTAGATTCTCAACCTATATTCAATACTGGATAAGGAAATCAATGTCGAGAGTCGTGGCACGAAGTTCAAGGGGAATTCAAATTCCATGGTCATTAACCAAGGCAATAAATCAAATACAGAAGGCTCGAAAAGCGTTGAACAACAGTGGTAGGAGATATTCGGATGACGATATAGCCAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCTAGCAACTGTTTAAAAGTTGTGGGTTCAGTTGATCAGAAGATAGGTGATGGACTAAATATGAAATATATGGAATTGACAGCAGATACATCAATAGAGAGCCCAGAAGACACTGTGAAGCGGAGACTAATGAAGAAAGACATCTTTAATCTTCTTGAAGTGTTGGAATCAAGGGAGAGACAGGTCCTGGTGCTGAGATACGGACTCATGGATTCCCAACCCAAGTCGCTCGAGGAAATTGGAAAACTTCTGTGCGTAAGTAAGGAATGGGTTCGAAAAATCGAAAGGAAAGCCACAACAAAGCTTAAAAATGAAGAGACTGTGAGAAACTTGAGCCATTATTTGGATTGA

Protein sequence

MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD

Homology

[Close]

BLAST of Carg08264 vs. NCBI nr
Match: KAG7029701.1 (RNA polymerase sigma factor sigC [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1074.7 bits (2778), Expect = 4.3e-310
Identity = 558/558 (100.00%), Postives = 558/558 (100.00%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
           ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180
           LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS
Sbjct: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180

Query: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240
           SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT
Sbjct: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240

Query: 241 RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300
           RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Sbjct: 241 RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300

Query: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360
           WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL
Sbjct: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360

Query: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420
           QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS
Sbjct: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420

Query: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480
           GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT
Sbjct: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480

Query: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540
           VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA
Sbjct: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540

Query: 541 TTKLKNEETVRNLSHYLD 559
           TTKLKNEETVRNLSHYLD
Sbjct: 541 TTKLKNEETVRNLSHYLD 558

[Close]

BLAST of Carg08264 vs. NCBI nr
Match: XP_022962483.1 (RNA polymerase sigma factor sigC-like [Cucurbita moschata])

HSP 1 Score: 1065.4 bits (2754), Expect = 1.6e-307
Identity = 553/558 (99.10%), Postives = 555/558 (99.46%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
           ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180
           LPTGRASPFGMLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASS
Sbjct: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASS 180

Query: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240
           SF DLSDLPIEVGGDHNVNQKTDDQNDNI+VYSGKRAGRRSVKRRAMDNADKVASRPLAT
Sbjct: 181 SFRDLSDLPIEVGGDHNVNQKTDDQNDNIIVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240

Query: 241 RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300
           RAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRET EKESGRTASMSC
Sbjct: 241 RAAKEKFRSSRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETSEKESGRTASMSC 300

Query: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360
           WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL
Sbjct: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360

Query: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420
           QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS
Sbjct: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420

Query: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480
           GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT
Sbjct: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480

Query: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540
           VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA
Sbjct: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540

Query: 541 TTKLKNEETVRNLSHYLD 559
           TTKLKNEETVRNLSHYLD
Sbjct: 541 TTKLKNEETVRNLSHYLD 558

[Close]

BLAST of Carg08264 vs. NCBI nr
Match: XP_023546255.1 (RNA polymerase sigma factor sigC-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1058.9 bits (2737), Expect = 1.5e-305
Identity = 551/558 (98.75%), Postives = 553/558 (99.10%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
           ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180
           LPTGRASPFGMLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASS
Sbjct: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASS 180

Query: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240
           SF DLSDLPIEVGGDHNVNQKTDDQNDNI+VYSGKRAGRRSVKRRAMDNADKVASRPLAT
Sbjct: 181 SFRDLSDLPIEVGGDHNVNQKTDDQNDNIIVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240

Query: 241 RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300
           RAAKEKFRS RKKASNSKKRRS VARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Sbjct: 241 RAAKEKFRSSRKKASNSKKRRSTVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300

Query: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360
           WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL
Sbjct: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360

Query: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420
           QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS
Sbjct: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420

Query: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480
           GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT
Sbjct: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480

Query: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540
           VKR LMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKA
Sbjct: 481 VKRMLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLRVSKEWVRKIERKA 540

Query: 541 TTKLKNEETVRNLSHYLD 559
           TTKLKNEETVRNLSHYLD
Sbjct: 541 TTKLKNEETVRNLSHYLD 558

[Close]

BLAST of Carg08264 vs. NCBI nr
Match: XP_022996943.1 (RNA polymerase sigma factor sigC-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 1051.6 bits (2718), Expect = 2.4e-303
Identity = 546/558 (97.85%), Postives = 551/558 (98.75%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
           ALKTYTCLSEAPQTLADGLLDLEEKE+EINSGAKSL HL YGSKNSGPSKVEDNFCSCTS
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEKEVEINSGAKSLSHLHYGSKNSGPSKVEDNFCSCTS 120

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180
           LPTGRASPF MLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASS
Sbjct: 121 LPTGRASPFDMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASS 180

Query: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240
           SF DLSDLPIEVGGDHNVNQKTDDQN NI+VYSGKRAGRRSVKRRAMDNADKVASRPLAT
Sbjct: 181 SFRDLSDLPIEVGGDHNVNQKTDDQNHNIIVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240

Query: 241 RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300
           RAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Sbjct: 241 RAAKEKFRSSRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300

Query: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360
           WADA+SIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL
Sbjct: 301 WADASSIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360

Query: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420
           QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS
Sbjct: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420

Query: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480
           GRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT
Sbjct: 421 GRRYSDDDVAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480

Query: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540
           VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKA
Sbjct: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLRVSKEWVRKIERKA 540

Query: 541 TTKLKNEETVRNLSHYLD 559
           TTKLKNEETVRNLSHYLD
Sbjct: 541 TTKLKNEETVRNLSHYLD 558

[Close]

BLAST of Carg08264 vs. NCBI nr
Match: XP_022996944.1 (RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 1043.1 bits (2696), Expect = 8.6e-301
Identity = 545/558 (97.67%), Postives = 549/558 (98.39%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
           ALKTYTCLSEAPQTLADGLLDLEEK  EINSGAKSL HL YGSKNSGPSKVEDNFCSCTS
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEK--EINSGAKSLSHLHYGSKNSGPSKVEDNFCSCTS 120

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180
           LPTGRASPF MLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASS
Sbjct: 121 LPTGRASPFDMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASS 180

Query: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240
           SF DLSDLPIEVGGDHNVNQKTDDQN NI+VYSGKRAGRRSVKRRAMDNADKVASRPLAT
Sbjct: 181 SFRDLSDLPIEVGGDHNVNQKTDDQNHNIIVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240

Query: 241 RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300
           RAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Sbjct: 241 RAAKEKFRSSRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300

Query: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360
           WADA+SIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL
Sbjct: 301 WADASSIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360

Query: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420
           QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS
Sbjct: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420

Query: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480
           GRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT
Sbjct: 421 GRRYSDDDVAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480

Query: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540
           VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKA
Sbjct: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLRVSKEWVRKIERKA 540

Query: 541 TTKLKNEETVRNLSHYLD 559
           TTKLKNEETVRNLSHYLD
Sbjct: 541 TTKLKNEETVRNLSHYLD 556

[Close]

BLAST of Carg08264 vs. ExPASy Swiss-Prot
Match: O24621 (RNA polymerase sigma factor sigC OS=Arabidopsis thaliana OX=3702 GN=SIGC PE=2 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.1e-109
Identity = 235/521 (45.11%), Postives = 329/521 (63.15%), Query Frame = 0


Query: 43  RLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYG 102
           R SF SS  EE      ++LK   C S +P T  + +                   L+  
Sbjct: 84  RWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNV----------------YVELKDP 143

Query: 103 SKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKL 162
            +N G    E ++ S + L       + +L +NL  LEETF     + +ERDI+LQ+ KL
Sbjct: 144 KENIGVGSAERSYSSRSML------QYNLLAKNLLALEETFVALDSVRMERDIMLQMGKL 203

Query: 163 GALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSV 222
           GA E F  CLSR  + SS    LSD            +  D   +  V  S +R  ++  
Sbjct: 204 GAAELFKTCLSR-YRGSSITSCLSD----------TTELVDTTPNQQVFVSSRRKVKKKA 263

Query: 223 KRRAM--DNADKVASRPLATRAAKEKFRSLR-KKASNSKKRRSIVARNEAEMSTGVKVVA 282
           +R ++  +N D+ +S P+  R         R ++    +K+R  ++RNE EMSTGVK+VA
Sbjct: 264 RRSSVTAENGDQ-SSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVA 323

Query: 283 NLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAK 342
           ++ERIR  LE+ESG+ AS+SCWA AA ++ K L + L +GW+C+DEL++ST SLV+FLA+
Sbjct: 324 DMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLAR 383

Query: 343 KYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQI 402
            YR  G+  EDL+QAG +GVLQG ERFD  RG++FSTY+QYWIRKSMS +V+R +RG+ I
Sbjct: 384 NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHI 443

Query: 403 PWSLTKAINQIQKARKALNNS-GRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKI 462
           P S+ + IN IQKARK L  S G +Y +D++IAK TG  + K+R A+ CLKVVGS+D+K+
Sbjct: 444 PSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKV 503

Query: 463 GDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPK 522
           GD    K++E T DT++ESPE+ V R+  ++DI +LLE LE RE+QV+VLRYGL D +PK
Sbjct: 504 GDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPK 563

Query: 523 SLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD 559
           SLEEIGKLL VSKEW+RKIER+A  KL+++    +L +YL+
Sbjct: 564 SLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570

[Close]

BLAST of Carg08264 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 5.6e-53
Identity = 131/403 (32.51%), Postives = 238/403 (59.06%), Query Frame = 0


Query: 169 NACLSRTLKASSSFHD-LSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAM 228
           N  +S  + AS+S  + + DL  E      V    +  + ++ V S ++  R++ + + +
Sbjct: 171 NGIVSDKITASASNKESIGDLESE--KQEEVELLEEQPSVSLAVRSTRQTERKARRAKGL 230

Query: 229 DN------ADKVASRPLATRAAKEK------FRSLRKKASNSKKRRSIVARNEAEMSTGV 288
           +       + K  S P   R   ++       R LR   S+SK    +  R E E+S G+
Sbjct: 231 EKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK---LLTVREEHELSAGI 290

Query: 289 KVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVI 348
           + +  LER++  L + SGR  + + WA AA +D K L++++  G  C+D++++S   LVI
Sbjct: 291 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 350

Query: 349 FLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSR 408
            +AK Y+ +G+ ++DLVQ G  G+++G E+FD  +GF+FSTY  +WI++++ + ++  SR
Sbjct: 351 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 410

Query: 409 GIQIPWSLTKAINQIQKARKAL-NNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVD 468
            I++P+ + +A  ++++ARK L + +G+   +++IA+ATGL + ++       K   S+D
Sbjct: 411 MIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLD 470

Query: 469 QKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDS 528
           QKIG   N+K  E+ AD    + ED + +  M++D+  +L+ L +RE+QV+  R+G+ D 
Sbjct: 471 QKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDG 530

Query: 529 QPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYL 558
           + K+L+EIG+++ VS+E VR+IE  A  KLKN++   +L  YL
Sbjct: 531 RMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568

[Close]

BLAST of Carg08264 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 2.4e-43
Identity = 113/339 (33.33%), Postives = 197/339 (58.11%), Query Frame = 0


Query: 226 AMDNADKVASRPLATRAAKEKFR------SLRKKASNSKKRRSIVARNEAEMSTGVKVVA 285
           A+D+ D V     A   AK K R      S+R       + R + A  E E++  +  + 
Sbjct: 61  AIDDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLL 120

Query: 286 NLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAK 345
            LERIR+ L ++  R  S + WA A    + + +++L  G   +D++++S   LV+ +AK
Sbjct: 121 ALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAK 180

Query: 346 KYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQI 405
           KY   GL  +DL+Q G++G+++  E+FD ++G++FSTY  +WIR++++R +A  SR I++
Sbjct: 181 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 240

Query: 406 PWSLTKAINQIQKARKALNNS-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIG 465
           P  L + I++I+K  K L+   GR+ ++++IA    + + K+R  +   ++  S++  IG
Sbjct: 241 PVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 300

Query: 466 DGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKS 525
              + +  +   +   E+PED V + L+++D+  +L  L  RER VL LRYGL D + K+
Sbjct: 301 KEEDSRLGDF-IEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKT 360

Query: 526 LEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYL 558
           LEEIG+L  V++E +R+IE KA  KL++      L  Y+
Sbjct: 361 LEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of Carg08264 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.2e-42
Identity = 120/383 (31.33%), Postives = 215/383 (56.14%), Query Frame = 0


Query: 184 DLSDLPIE------VGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRP 243
           +L DL IE      +  D ++++  + Q D     SGK A  R   RR            
Sbjct: 25  ELDDLLIEEDEDLLLADDGDIDEFLEPQTDEDDAKSGKAAKSR---RR------------ 84

Query: 244 LATRAAKEKFR--SLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRT 303
             T++ K+ +   S+R       + R + A  E E++  +  +  LER+RE L ++  R 
Sbjct: 85  --TQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERD 144

Query: 304 ASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAG 363
              S WA+A  + +   + +L  G   +D++++S   LV+ +AKKY   GL  +DL+Q G
Sbjct: 145 PRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEG 204

Query: 364 AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARK 423
           ++G+++  E+FD ++G++FSTY  +WIR++++R +A  SR I++P  L + I++I+K  K
Sbjct: 205 SLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTK 264

Query: 424 ALNNS-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSI 483
            L+   GR+ ++++IA    + + K+R  +   ++  S++  IG   + +  +   ++  
Sbjct: 265 LLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF-IESDG 324

Query: 484 ESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVR 543
           E+PED V + L+++D+  +L+ L  RER VL LRYGL D + K+LEEIG++  V++E +R
Sbjct: 325 ETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIR 384

Query: 544 KIERKATTKLKNEETVRNLSHYL 558
           +IE KA  KL++      L  Y+
Sbjct: 385 QIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of Carg08264 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.4e-40
Identity = 107/359 (29.81%), Postives = 205/359 (57.10%), Query Frame = 0


Query: 210 VVYSGKRAGRRSVKRRA--MDNADKVASRPLATRAAKEKFR-------SLRKKASNSKKR 269
           +V S ++  RR+  RRA   ++ D     P  T +AK+K++       +L+      + +
Sbjct: 187 IVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKT-SAKKKYKQGADNDDALQLFLWGPETK 246

Query: 270 RSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGW 329
           + + A+ EAE+ + ++ +  LE+++  LE ++G   ++  WA+A  I    L+  +  G 
Sbjct: 247 QLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGR 306

Query: 330 FCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQY 389
             +++L+ +   LV+ +AK+Y+  GL  +DL+Q G++G+++ VE+F P+ G RF+TY  +
Sbjct: 307 SSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYW 366

Query: 390 WIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGR-RYSDDDIAKATGLPLAK 449
           WIR+S+ + + ++SR I++P ++   + ++ +ARK     G  R S +++A   G+   K
Sbjct: 367 WIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEK 426

Query: 450 VRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLES 509
           +       +   S+ Q I    +  + E+T D+ IE+P  +V ++LM+  + NLL VL  
Sbjct: 427 LDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSP 486

Query: 510 RERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD 559
           +ER+++ LR+G+   + +SL EIG++  +SKE VR++E +A  +LK       L  Y D
Sbjct: 487 KERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYAD 544

[Close]

BLAST of Carg08264 vs. ExPASy TrEMBL
Match: A0A6J1HEX7 (RNA polymerase sigma factor sigC-like OS=Cucurbita moschata OX=3662 GN=LOC111462905 PE=3 SV=1)

HSP 1 Score: 1065.4 bits (2754), Expect = 7.8e-308
Identity = 553/558 (99.10%), Postives = 555/558 (99.46%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
           ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180
           LPTGRASPFGMLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASS
Sbjct: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASS 180

Query: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240
           SF DLSDLPIEVGGDHNVNQKTDDQNDNI+VYSGKRAGRRSVKRRAMDNADKVASRPLAT
Sbjct: 181 SFRDLSDLPIEVGGDHNVNQKTDDQNDNIIVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240

Query: 241 RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300
           RAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRET EKESGRTASMSC
Sbjct: 241 RAAKEKFRSSRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETSEKESGRTASMSC 300

Query: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360
           WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL
Sbjct: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360

Query: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420
           QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS
Sbjct: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420

Query: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480
           GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT
Sbjct: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480

Query: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540
           VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA
Sbjct: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540

Query: 541 TTKLKNEETVRNLSHYLD 559
           TTKLKNEETVRNLSHYLD
Sbjct: 541 TTKLKNEETVRNLSHYLD 558

[Close]

BLAST of Carg08264 vs. ExPASy TrEMBL
Match: A0A6J1KCF5 (RNA polymerase sigma factor sigC-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492024 PE=3 SV=1)

HSP 1 Score: 1051.6 bits (2718), Expect = 1.2e-303
Identity = 546/558 (97.85%), Postives = 551/558 (98.75%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
           ALKTYTCLSEAPQTLADGLLDLEEKE+EINSGAKSL HL YGSKNSGPSKVEDNFCSCTS
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEKEVEINSGAKSLSHLHYGSKNSGPSKVEDNFCSCTS 120

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180
           LPTGRASPF MLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASS
Sbjct: 121 LPTGRASPFDMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASS 180

Query: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240
           SF DLSDLPIEVGGDHNVNQKTDDQN NI+VYSGKRAGRRSVKRRAMDNADKVASRPLAT
Sbjct: 181 SFRDLSDLPIEVGGDHNVNQKTDDQNHNIIVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240

Query: 241 RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300
           RAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Sbjct: 241 RAAKEKFRSSRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300

Query: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360
           WADA+SIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL
Sbjct: 301 WADASSIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360

Query: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420
           QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS
Sbjct: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420

Query: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480
           GRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT
Sbjct: 421 GRRYSDDDVAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480

Query: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540
           VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKA
Sbjct: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLRVSKEWVRKIERKA 540

Query: 541 TTKLKNEETVRNLSHYLD 559
           TTKLKNEETVRNLSHYLD
Sbjct: 541 TTKLKNEETVRNLSHYLD 558

[Close]

BLAST of Carg08264 vs. ExPASy TrEMBL
Match: A0A6J1KA34 (RNA polymerase sigma factor sigC-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492024 PE=3 SV=1)

HSP 1 Score: 1043.1 bits (2696), Expect = 4.1e-301
Identity = 545/558 (97.67%), Postives = 549/558 (98.39%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
           ALKTYTCLSEAPQTLADGLLDLEEK  EINSGAKSL HL YGSKNSGPSKVEDNFCSCTS
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEK--EINSGAKSLSHLHYGSKNSGPSKVEDNFCSCTS 120

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180
           LPTGRASPF MLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASS
Sbjct: 121 LPTGRASPFDMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASS 180

Query: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240
           SF DLSDLPIEVGGDHNVNQKTDDQN NI+VYSGKRAGRRSVKRRAMDNADKVASRPLAT
Sbjct: 181 SFRDLSDLPIEVGGDHNVNQKTDDQNHNIIVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240

Query: 241 RAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300
           RAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Sbjct: 241 RAAKEKFRSSRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC 300

Query: 301 WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360
           WADA+SIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL
Sbjct: 301 WADASSIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL 360

Query: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420
           QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS
Sbjct: 361 QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS 420

Query: 421 GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480
           GRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT
Sbjct: 421 GRRYSDDDVAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT 480

Query: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKA 540
           VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKA
Sbjct: 481 VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLRVSKEWVRKIERKA 540

Query: 541 TTKLKNEETVRNLSHYLD 559
           TTKLKNEETVRNLSHYLD
Sbjct: 541 TTKLKNEETVRNLSHYLD 556

[Close]

BLAST of Carg08264 vs. ExPASy TrEMBL
Match: A0A1S3BBM8 (RNA polymerase sigma factor sigC OS=Cucumis melo OX=3656 GN=LOC103488161 PE=3 SV=1)

HSP 1 Score: 923.7 bits (2386), Expect = 3.7e-265
Identity = 482/562 (85.77%), Postives = 517/562 (91.99%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGT FRPNLKW FQIQTHS + SPSKLSPYASKGREA+FNSGRLSFFSS CEEGE+I RE
Sbjct: 2   MGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRE 61

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
            LKTYTCLSEAPQT  D LL+LE  EIE+NSGAKSL  L YG K++ PSKVEDNF S TS
Sbjct: 62  TLKTYTCLSEAPQTSPDDLLNLE--EIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTS 121

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180
           +PTG+ASPFG+LMENLDVLEETF ESGMLSLERDI+LQLTKLGALEFFN CLSRTLK +S
Sbjct: 122 MPTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TS 181

Query: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240
           SFHDLSDLP+E G DHNVNQKT+DQN ++ VYSGKRAGRRSVK+RAMDNADKVASRPLAT
Sbjct: 182 SFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLAT 241

Query: 241 RAAKEKFRS----LRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTA 300
           RA KEK  S     RKK+SNS KRR +VARNEAEMSTG+KVVANLERIRETLEKESGR A
Sbjct: 242 RAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIA 301

Query: 301 SMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGA 360
           SMSCWA+AAS+DIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA
Sbjct: 302 SMSCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGA 361

Query: 361 IGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKA 420
           +GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQIPWSLTKAINQIQKARK 
Sbjct: 362 LGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKV 421

Query: 421 LNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIES 480
           LN  GRRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+S
Sbjct: 422 LNQGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQS 481

Query: 481 PEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKI 540
           PE+TVKR+LMKKDIFN+L+ LESRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKI
Sbjct: 482 PEETVKRKLMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKI 541

Query: 541 ERKATTKLKNEETVRNLSHYLD 559
           E+KA TKLKNEETV+NLSHYLD
Sbjct: 542 EKKAMTKLKNEETVKNLSHYLD 560

[Close]

BLAST of Carg08264 vs. ExPASy TrEMBL
Match: A0A6J1BRC1 (RNA polymerase sigma factor sigC isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004887 PE=3 SV=1)

HSP 1 Score: 898.7 bits (2321), Expect = 1.3e-257
Identity = 473/563 (84.01%), Postives = 503/563 (89.34%), Query Frame = 0


Query: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60
           MGTSFRPNLKWAFQ+QTHSR  SPSK  P+ASKGREASFNS RLSFFS+ CEEGE+ SRE
Sbjct: 1   MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRE 60

Query: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120
            LKTYTCLSEAPQT AD LLDL+  EIEINS A+ L H  YG KN+GPSK+EDNF SCTS
Sbjct: 61  TLKTYTCLSEAPQTSADDLLDLD--EIEINSRARPLSHFHYGIKNTGPSKIEDNFSSCTS 120

Query: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKAS- 180
           LPTG+AS FGMLMENLDVLEE FTESGMLSLERDI+LQLTKLGALEFFN CLSRTLK S 
Sbjct: 121 LPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTST 180

Query: 181 SSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLA 240
           SSF DLSDLPIE GG HNVNQKTD QND+I+VYSGK+ GRRS+K RA D ADKVAS+P A
Sbjct: 181 SSFLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPA 240

Query: 241 TRAAKEKF----RSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRT 300
           T AAKEKF    R  RK+  NS++RR +VARNEAEMSTGVKVVANLERIRETLEKES + 
Sbjct: 241 TGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKR 300

Query: 301 ASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAG 360
           ASMSCWADAA IDIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAG
Sbjct: 301 ASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAG 360

Query: 361 AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARK 420
           AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQIPWSLTKAINQIQKARK
Sbjct: 361 AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK 420

Query: 421 ALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIE 480
           ALNN  RRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+
Sbjct: 421 ALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQ 480

Query: 481 SPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRK 540
           SPE+TVK++LMKKDIFNLLE LE RERQVL LRYGL D QPKSLEEIGKLL VSKEWVRK
Sbjct: 481 SPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRK 540

Query: 541 IERKATTKLKNEETVRNLSHYLD 559
           IE+KA TKLKNEET  NL HYLD
Sbjct: 541 IEKKAMTKLKNEETTGNLCHYLD 561

[Close]

BLAST of Carg08264 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 398.7 bits (1023), Expect = 7.9e-111
Identity = 235/521 (45.11%), Postives = 329/521 (63.15%), Query Frame = 0


Query: 43  RLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYG 102
           R SF SS  EE      ++LK   C S +P T  + +                   L+  
Sbjct: 84  RWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNV----------------YVELKDP 143

Query: 103 SKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKL 162
            +N G    E ++ S + L       + +L +NL  LEETF     + +ERDI+LQ+ KL
Sbjct: 144 KENIGVGSAERSYSSRSML------QYNLLAKNLLALEETFVALDSVRMERDIMLQMGKL 203

Query: 163 GALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSV 222
           GA E F  CLSR  + SS    LSD            +  D   +  V  S +R  ++  
Sbjct: 204 GAAELFKTCLSR-YRGSSITSCLSD----------TTELVDTTPNQQVFVSSRRKVKKKA 263

Query: 223 KRRAM--DNADKVASRPLATRAAKEKFRSLR-KKASNSKKRRSIVARNEAEMSTGVKVVA 282
           +R ++  +N D+ +S P+  R         R ++    +K+R  ++RNE EMSTGVK+VA
Sbjct: 264 RRSSVTAENGDQ-SSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVA 323

Query: 283 NLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAK 342
           ++ERIR  LE+ESG+ AS+SCWA AA ++ K L + L +GW+C+DEL++ST SLV+FLA+
Sbjct: 324 DMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLAR 383

Query: 343 KYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQI 402
            YR  G+  EDL+QAG +GVLQG ERFD  RG++FSTY+QYWIRKSMS +V+R +RG+ I
Sbjct: 384 NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHI 443

Query: 403 PWSLTKAINQIQKARKALNNS-GRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKI 462
           P S+ + IN IQKARK L  S G +Y +D++IAK TG  + K+R A+ CLKVVGS+D+K+
Sbjct: 444 PSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKV 503

Query: 463 GDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPK 522
           GD    K++E T DT++ESPE+ V R+  ++DI +LLE LE RE+QV+VLRYGL D +PK
Sbjct: 504 GDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPK 563

Query: 523 SLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD 559
           SLEEIGKLL VSKEW+RKIER+A  KL+++    +L +YL+
Sbjct: 564 SLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570

[Close]

BLAST of Carg08264 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 210.3 bits (534), Expect = 4.0e-54
Identity = 131/403 (32.51%), Postives = 238/403 (59.06%), Query Frame = 0


Query: 169 NACLSRTLKASSSFHD-LSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAM 228
           N  +S  + AS+S  + + DL  E      V    +  + ++ V S ++  R++ + + +
Sbjct: 171 NGIVSDKITASASNKESIGDLESE--KQEEVELLEEQPSVSLAVRSTRQTERKARRAKGL 230

Query: 229 DN------ADKVASRPLATRAAKEK------FRSLRKKASNSKKRRSIVARNEAEMSTGV 288
           +       + K  S P   R   ++       R LR   S+SK    +  R E E+S G+
Sbjct: 231 EKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK---LLTVREEHELSAGI 290

Query: 289 KVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVI 348
           + +  LER++  L + SGR  + + WA AA +D K L++++  G  C+D++++S   LVI
Sbjct: 291 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 350

Query: 349 FLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSR 408
            +AK Y+ +G+ ++DLVQ G  G+++G E+FD  +GF+FSTY  +WI++++ + ++  SR
Sbjct: 351 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 410

Query: 409 GIQIPWSLTKAINQIQKARKAL-NNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVD 468
            I++P+ + +A  ++++ARK L + +G+   +++IA+ATGL + ++       K   S+D
Sbjct: 411 MIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLD 470

Query: 469 QKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDS 528
           QKIG   N+K  E+ AD    + ED + +  M++D+  +L+ L +RE+QV+  R+G+ D 
Sbjct: 471 QKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDG 530

Query: 529 QPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYL 558
           + K+L+EIG+++ VS+E VR+IE  A  KLKN++   +L  YL
Sbjct: 531 RMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568

[Close]

BLAST of Carg08264 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-41
Identity = 107/359 (29.81%), Postives = 205/359 (57.10%), Query Frame = 0


Query: 210 VVYSGKRAGRRSVKRRA--MDNADKVASRPLATRAAKEKFR-------SLRKKASNSKKR 269
           +V S ++  RR+  RRA   ++ D     P  T +AK+K++       +L+      + +
Sbjct: 187 IVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKT-SAKKKYKQGADNDDALQLFLWGPETK 246

Query: 270 RSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGW 329
           + + A+ EAE+ + ++ +  LE+++  LE ++G   ++  WA+A  I    L+  +  G 
Sbjct: 247 QLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGR 306

Query: 330 FCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQY 389
             +++L+ +   LV+ +AK+Y+  GL  +DL+Q G++G+++ VE+F P+ G RF+TY  +
Sbjct: 307 SSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYW 366

Query: 390 WIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGR-RYSDDDIAKATGLPLAK 449
           WIR+S+ + + ++SR I++P ++   + ++ +ARK     G  R S +++A   G+   K
Sbjct: 367 WIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEK 426

Query: 450 VRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLES 509
           +       +   S+ Q I    +  + E+T D+ IE+P  +V ++LM+  + NLL VL  
Sbjct: 427 LDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSP 486

Query: 510 RERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD 559
           +ER+++ LR+G+   + +SL EIG++  +SKE VR++E +A  +LK       L  Y D
Sbjct: 487 KERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYAD 544

[Close]

BLAST of Carg08264 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 146.0 bits (367), Expect = 9.2e-35
Identity = 86/235 (36.60%), Postives = 136/235 (57.87%), Query Frame = 0


Query: 323 QDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWI 382
           ++++ R    LV+ +A  Y+  GL ++DL+Q G+IG+L+G ERFDP RG++ STY+ +WI
Sbjct: 180 REKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWI 239

Query: 383 RKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGRRY-SDDDIAKATGLPLAKVR 442
           ++++ R +A  SR +++P S+ +   ++ +A   L    RR  S ++IA+   L ++ VR
Sbjct: 240 KQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVR 299

Query: 443 VASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRE 502
           +A    +   S+D+       M   E+        PE+ VKR  MK +I  LL  L +RE
Sbjct: 300 LAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARE 359

Query: 503 RQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHY 557
            +VL L +GL    P S EEIGK L +S+E VR+I   A  KL+N   V +L  Y
Sbjct: 360 SRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414

[Close]

BLAST of Carg08264 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-25
Identity = 126/496 (25.40%), Postives = 226/496 (45.56%), Query Frame = 0


Query: 81  DLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVL- 140
           D+ EK + +N    S  H+   +K+   +K   N+                L E++DV  
Sbjct: 24  DVTEKFLSVNDHCSSQYHIA-STKSGITAKKASNYSPSFPSSNRHTQSAKALKESVDVAS 83

Query: 141 ---------------EETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHD 200
                          EE + +  ++S   + +L L K    + +N       KA SS   
Sbjct: 84  TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQKSMLEKSWNLSFE---KAVSS--- 143

Query: 201 LSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAK 260
                 E  G   + +K       ++  SG  A +R +  +   N   V  + ++  ++ 
Sbjct: 144 ------EYPGKGTIRKK----KIPVITCSGISARQRRIGAKKKTNMTHV--KAVSDVSSG 203

Query: 261 EKFRSLRKKASNSKKRRSI-VARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWAD 320
           ++ R   K   +      + V R   ++ +G+++  +  R+++ L    G   S    A 
Sbjct: 204 KQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRL----GCEPSDEQLAV 263

Query: 321 AASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGV 380
           +  I   +LQ  L      +++L  S   LV+ +A++Y   G  M DLVQ G IG+L+G+
Sbjct: 264 SLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGI 323

Query: 381 ERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGRR 440
           E+FD  +GFR STY+ +WIR+ +SR +  +SR +++P  L + +  I+ A+  L   G  
Sbjct: 324 EKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGIT 383

Query: 441 YSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLN----MKYMELTADTSIE-SPE 500
            S D IA++  +   KVR A+  +  V S+D+     LN      +    ADT +E +P 
Sbjct: 384 PSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPW 443

Query: 501 DTVKRRLMKKDIFNLLE-VLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIE 554
                  +K+++  L+   L  RE++++ L YGL D +  + E+I K + +S+E VR++ 
Sbjct: 444 HGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVG 495

The following BLAST results are available for this feature:

BLAST of Carg08264 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029701.1	4.3e-310	100.00	RNA polymerase sigma factor sigC [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022962483.1	1.6e-307	99.10	RNA polymerase sigma factor sigC-like [Cucurbita moschata]	[more]
XP_023546255.1	1.5e-305	98.75	RNA polymerase sigma factor sigC-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996943.1	2.4e-303	97.85	RNA polymerase sigma factor sigC-like isoform X1 [Cucurbita maxima]	[more]
XP_022996944.1	8.6e-301	97.67	RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg08264 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24621	1.1e-109	45.11	RNA polymerase sigma factor sigC OS=Arabidopsis thaliana OX=3702 GN=SIGC PE=2 SV...	[more]
O22056	5.6e-53	32.51	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P38023	2.4e-43	33.33	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P26683	1.2e-42	31.33	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
Q9LD95	2.4e-40	29.81	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg08264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEX7	7.8e-308	99.10	RNA polymerase sigma factor sigC-like OS=Cucurbita moschata OX=3662 GN=LOC111462...	[more]
A0A6J1KCF5	1.2e-303	97.85	RNA polymerase sigma factor sigC-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1KA34	4.1e-301	97.67	RNA polymerase sigma factor sigC-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S3BBM8	3.7e-265	85.77	RNA polymerase sigma factor sigC OS=Cucumis melo OX=3656 GN=LOC103488161 PE=3 SV...	[more]
A0A6J1BRC1	1.3e-257	84.01	RNA polymerase sigma factor sigC isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Carg08264 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53920.1	7.9e-111	45.11	RNApolymerase sigma-subunit C	[more]
AT1G08540.1	4.0e-54	32.51	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.7e-41	29.81	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	9.2e-35	36.60	sigma factor 4	[more]
AT1G64860.1	3.9e-25	25.40	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 497..509 score: 45.36 coord: 350..363 score: 43.92 coord: 518..533 score: 40.69 coord: 374..382 score: 62.37 coord: 533..544 score: 50.32
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 493..545 e-value: 1.6E-13 score: 50.0
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 331..395 e-value: 1.1E-13 score: 50.8
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 399..475 e-value: 5.3E-5 score: 25.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 480..558 e-value: 4.7E-20 score: 73.0
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 406..480 e-value: 3.8E-9 score: 36.5
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 324..546 e-value: 5.3E-27 score: 92.4
None	No IPR available	GENE3D	1.20.120.1810		coord: 214..395 e-value: 7.2E-31 score: 109.5
None	No IPR available	PANTHER	PTHR30603:SF13	RNA POLYMERASE SIGMA FACTOR SIGC	coord: 10..558
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 10..558
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 487..545 e-value: 3.38288E-9 score: 50.951
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 265..395
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 399..471
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 457..547

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08264-RA	Carg08264-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity