Carg08231 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08231
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 2821656 .. 2822485 (-)
RNA-Seq ExpressionCarg08231
SyntenyCarg08231
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAAAAGCAAGTTTTCGGAAAGTCAATTACTAGTGGGAGGAGGTTGCTTCAGGAAGAGATTGAATTAAGTTTCTATCTGTGTTTGGATTTAAGAGCTCGAATGATTTAGAGGTATTTGTCTGTTTCTTTACAGTTTCTGCTTGAATGAATCTGAAACCTAATAAGAGAGCGTGATTTGTTTCTTTTTTTTTTTTTTTTTTTCCTTTTTTTTATCCTCTTTCTTTAAAGTAGGAACAATATTATTTTATAGGTTCTCTGAATCTGGCCGACTTCTTGAGTAGAAGCAATCTTTCAAATGAAAGAGGGGAAAAAGGATTGTTGTTGGCTTTGATCGTGAACTTTGAGGAAGATAAATTTAGTAAAACCGTGTTTCCTTTCTCGGATACGGCTCGATTTTGTCTAGGTAGTGGTTATTGTTTTGATTTATCTATTTCCAATTCTGTGGGAGTTTCTACATAGATGCCACGGGAACTGGATTTAGAAAATTTTATGATTGGCTGTTTATCTTGATTATAACAATCTGGAAAATTGGCCAAATTCCTTGAAGAACCTTGAGATGATTTCCTCATTGTCATGGCTTGAATTAAGGTAAAACCGTGTTATCTCTCTTCTTTTCTTCCTTCCTGAGCTTGCGGAATGCTTTGGATACGTTCAAAACTTTGGCATTAGATGTGATGGAATTTGCTTGTTTGTTTCCTCCTTTTGTTAACATGTACAATCTTGCAGCAATTCTGTTTTTTTGTCGTTTCTAAATTTGATCAATTTCTTCCTACTATTTTATGCTTAACAGGGAAAAACTGCTCTATTTCTCGCCTGAGACCTTAG

mRNA sequence

ATGTTTGAAAAGCAAGTTTTCGGAAAGTCAATTACTAGTGGGAGGAGGTTGCTTCAGGAAGAGATTGAATTAAGTTCTCTGAATCTGGCCGACTTCTTGAGTAGAAGCAATCTTTCAAATGAAAGAGGGGAAAAAGGATTGTTGTTGGCTTTGATCGTGAACTTTGAGGAAGATAAATTTAGTAAAACCGTGTTTCCTTTCTCGGATACGGCTCGATTTTGTCTAGGGAAAAACTGCTCTATTTCTCGCCTGAGACCTTAG

Coding sequence (CDS)

ATGTTTGAAAAGCAAGTTTTCGGAAAGTCAATTACTAGTGGGAGGAGGTTGCTTCAGGAAGAGATTGAATTAAGTTCTCTGAATCTGGCCGACTTCTTGAGTAGAAGCAATCTTTCAAATGAAAGAGGGGAAAAAGGATTGTTGTTGGCTTTGATCGTGAACTTTGAGGAAGATAAATTTAGTAAAACCGTGTTTCCTTTCTCGGATACGGCTCGATTTTGTCTAGGGAAAAACTGCTCTATTTCTCGCCTGAGACCTTAG

Protein sequence

MFEKQVFGKSITSGRRLLQEEIELSSLNLADFLSRSNLSNERGEKGLLLALIVNFEEDKFSKTVFPFSDTARFCLGKNCSISRLRP
Homology
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BLAST of Carg08231 vs. NCBI nr
Match: KAG7029670.1 (hypothetical protein SDJN02_08010, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.2 bits (430), Expect = 7.5e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MFEKQVFGKSITSGRRLLQEEIELSSLNLADFLSRSNLSNERGEKGLLLALIVNFEEDKF 60
          MFEKQVFGKSITSGRRLLQEEIELSSLNLADFLSRSNLSNERGEKGLLLALIVNFEEDKF
Sbjct: 1  MFEKQVFGKSITSGRRLLQEEIELSSLNLADFLSRSNLSNERGEKGLLLALIVNFEEDKF 60

Query: 61 SKTVFPFSDTARFCLGKNCSISRLRP 87
          SKTVFPFSDTARFCLGKNCSISRLRP
Sbjct: 61 SKTVFPFSDTARFCLGKNCSISRLRP 86

The following BLAST results are available for this feature:
BLAST of Carg08231 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029670.17.5e-39100.00hypothetical protein SDJN02_08010, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg08231 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08231 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08231 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08231-RACarg08231-RAmRNA