Carg08186 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08186
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine-rich splicing factor SC35-like
Location	Carg_Chr05: 2546710 .. 2547303 (-)
RNA-Seq Expression	Carg08186
Synteny	Carg08186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATATGTTGGAATCTCTTGTTCCATCAGAGACCTAGTTGAGCTTGAGCCCTGAATCCGCCGCTGCTGCTCGTCACTCTCTCCATAGCTGAATCCATTAGTTGCAGAGAGAAATGTCGCACTTCGGAAGATCCGGTCCTCCCGACATCAGAGATACCTACTCGCTTCTCGTCCTCAACATCACTTTCCGTATTTTCGACCCCTAATTCTTCTCTTATCCACTTTCTTTACCTTCAACCTCATCTCTTCCTCTCTGTTTTGTCTGTAATTTCTTGTCTCCTTTTTTGTTTTTCAGGAACCACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGTATCTTTCTACCTCTCTCTCTCGCCCGCGCGCGCGTTTAATCTTATTTTTTCTCATTTTTTTTTTATGAATTAGAGTGTGTGATTGGTTGGTGGTGATTGCTGTTAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGATGAAGCACAGAAGGCAATTGACAAGCTTGACGGTCAGCTTCAGTTCGACGAAAATTCACATTAG

mRNA sequence

AATATATGTTGGAATCTCTTGTTCCATCAGAGACCTAGTTGAGCTTGAGCCCTGAATCCGCCGCTGCTGCTCGTCACTCTCTCCATAGCTGAATCCATTAGTTGCAGAGAGAAATGTCGCACTTCGGAAGATCCGGTCCTCCCGACATCAGAGATACCTACTCGCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGATGAAGCACAGAAGGCAATTGACAAGCTTGACGGTCAGCTTCAGTTCGACGAAAATTCACATTAG

Coding sequence (CDS)

ATGTCGCACTTCGGAAGATCCGGTCCTCCCGACATCAGAGATACCTACTCGCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGATGAAGCACAGAAGGCAATTGACAAGCTTGACGGTCAGCTTCAGTTCGACGAAAATTCACATTAG

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQLQFDENSH

Homology

[Close]

BLAST of Carg08186 vs. NCBI nr
Match: KAG7029627.1 (Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 2.3e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQLQFDENSH 89
          FVRYKYADEAQKAIDKLDGQLQFDENSH
Sbjct: 61 FVRYKYADEAQKAIDKLDGQLQFDENSH 88

[Close]

BLAST of Carg08186 vs. NCBI nr
Match: KAG6598682.1 (Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKYADEAQKAIDKLDG++
Sbjct: 61 FVRYKYADEAQKAIDKLDGRM 81

[Close]

BLAST of Carg08186 vs. NCBI nr
Match: XP_022952012.1 (serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKYADEAQKAIDKLDG++
Sbjct: 61 FVRYKYADEAQKAIDKLDGRM 81

[Close]

BLAST of Carg08186 vs. NCBI nr
Match: XP_023002671.1 (serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKYADEAQKAIDKLDG++
Sbjct: 61 FVRYKYADEAQKAIDKLDGRM 81

[Close]

BLAST of Carg08186 vs. NCBI nr
Match: XP_023538161.1 (serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKYADEAQKAIDKLDG++
Sbjct: 61 FVRYKYADEAQKAIDKLDGRM 81

[Close]

BLAST of Carg08186 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.6e-37
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKY DEA KA+++LDG++
Sbjct: 61 FVRYKYKDEAHKAVERLDGRV 81

[Close]

BLAST of Carg08186 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-15
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 4  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
          +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3  YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64 YKYADEAQKAIDKLDG 80
          +    +A+ A+D +DG
Sbjct: 63 FHDKRDAEDAMDAMDG 77

[Close]

BLAST of Carg08186 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-15
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 4  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
          +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3  YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64 YKYADEAQKAIDKLDG 80
          +    +A+ A+D +DG
Sbjct: 63 FHDKRDAEDAMDAMDG 77

[Close]

BLAST of Carg08186 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-15
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 4  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
          +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3  YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64 YKYADEAQKAIDKLDG 80
          +    +A+ A+D +DG
Sbjct: 63 FHDKRDAEDAMDAMDG 77

[Close]

BLAST of Carg08186 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-15
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 4  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
          +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3  YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64 YKYADEAQKAIDKLDG 80
          +    +A+ A+D +DG
Sbjct: 63 FHDKRDAEDAMDAMDG 77

[Close]

BLAST of Carg08186 vs. ExPASy TrEMBL
Match: A0A6J1KLY6 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496458 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKYADEAQKAIDKLDG++
Sbjct: 61 FVRYKYADEAQKAIDKLDGRM 81

[Close]

BLAST of Carg08186 vs. ExPASy TrEMBL
Match: A0A6J1KK62 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496458 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKYADEAQKAIDKLDG++
Sbjct: 61 FVRYKYADEAQKAIDKLDGRM 81

[Close]

BLAST of Carg08186 vs. ExPASy TrEMBL
Match: A0A6J1K6Z8 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492207 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKYADEAQKAIDKLDG++
Sbjct: 61 FVRYKYADEAQKAIDKLDGRM 81

[Close]

BLAST of Carg08186 vs. ExPASy TrEMBL
Match: A0A6J1K4H2 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492207 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKYADEAQKAIDKLDG++
Sbjct: 61 FVRYKYADEAQKAIDKLDGRM 81

[Close]

BLAST of Carg08186 vs. ExPASy TrEMBL
Match: A0A5A7VC44 (Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001460 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKYADEAQKAIDKLDG++
Sbjct: 61 FVRYKYADEAQKAIDKLDGRM 81

[Close]

BLAST of Carg08186 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 155.6 bits (392), Expect = 1.8e-38
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKY DEA KA+++LDG++
Sbjct: 61 FVRYKYKDEAHKAVERLDGRV 81

[Close]

BLAST of Carg08186 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 155.6 bits (392), Expect = 1.8e-38
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
          MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1  MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61 FVRYKYADEAQKAIDKLDGQL 82
          FVRYKY DEA KA+++LDG++
Sbjct: 61 FVRYKYKDEAHKAVERLDGRV 81

[Close]

BLAST of Carg08186 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-09
Identity = 22/61 (36.07%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 18  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKL 77
           LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 78  D 79
           +
Sbjct: 109 N 109

[Close]

BLAST of Carg08186 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 57.4 bits (137), Expect = 6.8e-09
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAIDKLDGQL 82
           +    +A +A  ++DG L
Sbjct: 87  FMDPADAAEAKHQMDGYL 102

[Close]

BLAST of Carg08186 vs. TAIR 10
Match: AT3G11400.1 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-09
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 14  DTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
           D  S+ V N++  T   DL  LF  +G V  V++  D++TG SRGF FV +   ++AQ+A
Sbjct: 211 DENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270

Query: 74  IDKLDG 80
           I+KL+G
Sbjct: 271 INKLNG 276

The following BLAST results are available for this feature:

BLAST of Carg08186 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029627.1	2.3e-43	100.00	Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6598682.1	2.9e-38	97.53	Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp...	[more]
XP_022952012.1	2.9e-38	97.53	serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata]	[more]
XP_023002671.1	2.9e-38	97.53	serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita maxima]	[more]
XP_023538161.1	2.9e-38	97.53	serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita pepo subsp....	[more]

BLAST of Carg08186 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	2.6e-37	88.89	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
Q3MHR5	2.8e-15	52.63	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
P30352	2.8e-15	52.63	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q01130	2.8e-15	52.63	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	2.8e-15	52.63	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of Carg08186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLY6	1.4e-38	97.53	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1KK62	1.4e-38	97.53	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A6J1K6Z8	1.4e-38	97.53	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1K4H2	1.4e-38	97.53	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A5A7VC44	1.4e-38	97.53	Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Carg08186 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	1.8e-38	88.89	ortholog of human splicing factor SC35	[more]
AT5G64200.2	1.8e-38	88.89	ortholog of human splicing factor SC35	[more]
AT5G18810.1	4.0e-09	36.07	SC35-like splicing factor 28	[more]
AT3G13570.1	6.8e-09	38.46	SC35-like splicing factor 30A	[more]
AT3G11400.1	8.9e-09	42.42	eukaryotic translation initiation factor 3G1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..80
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 1..80
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..84 e-value: 3.1E-16 score: 70.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..80 e-value: 3.1E-19 score: 68.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..88 score: 16.090803
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..87 e-value: 8.8E-23 score: 83.0
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08186-RA	Carg08186-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding