Carg08183 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08183
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	basic blue protein-like
Location	Carg_Chr04: 2723672 .. 2723881 (+)
RNA-Seq Expression	Carg08183
Synteny	Carg08183

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGGGAATTAGAGGTGTGGCCACAGTGATGTTGTGCTTGGTGGTGTTGTTGTTGCTGCAGCAACCAGAGGTGGGCAGCGCCGCCATTCACACGGTCGGAGATGACCTTGGATGGACCTTTAATGTCTCCTCTTGGCCAAATGGAAAGACCTTCCAAGCTGGCGATGTTCTTGGTATTACTCTTGTTCTTCATGAATTTTTTTGA

mRNA sequence

ATGGGTGAGGGAATTAGAGGTGTGGCCACAGTGATGTTGTGCTTGGTGGTGTTGTTGTTGCTGCAGCAACCAGAGGTGGGCAGCGCCGCCATTCACACGGTCGGAGATGACCTTGGATGGACCTTTAATGTCTCCTCTTGGCCAAATGGAAAGACCTTCCAAGCTGGCGATGTTCTTGGTATTACTCTTGTTCTTCATGAATTTTTTTGA

Coding sequence (CDS)

ATGGGTGAGGGAATTAGAGGTGTGGCCACAGTGATGTTGTGCTTGGTGGTGTTGTTGTTGCTGCAGCAACCAGAGGTGGGCAGCGCCGCCATTCACACGGTCGGAGATGACCTTGGATGGACCTTTAATGTCTCCTCTTGGCCAAATGGAAAGACCTTCCAAGCTGGCGATGTTCTTGGTATTACTCTTGTTCTTCATGAATTTTTTTGA

Protein sequence

MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVLGITLVLHEFF

Homology

[Close]

BLAST of Carg08183 vs. NCBI nr
Match: KAG7031005.1 (hypothetical protein SDJN02_05044, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 4.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVLG 60
          MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVLG
Sbjct: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVLG 60

Query: 61 ITLVLHEFF 70
          ITLVLHEFF
Sbjct: 61 ITLVLHEFF 69

[Close]

BLAST of Carg08183 vs. NCBI nr
Match: XP_022942770.1 (basic blue protein-like [Cucurbita moschata])

HSP 1 Score: 123.6 bits (309), Expect = 6.5e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 60
          MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL
Sbjct: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 59

[Close]

BLAST of Carg08183 vs. NCBI nr
Match: KAG6600349.1 (hypothetical protein SDJN03_05582, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 60
          MGEGIRGV TVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL
Sbjct: 1  MGEGIRGVGTVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 59

[Close]

BLAST of Carg08183 vs. NCBI nr
Match: XP_022983401.1 (basic blue protein-like [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 6.7e-22
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 60
          MGEGIR + TVMLCLVVLLLLQQPEVGSAA HTVGDDLGWTFNVSSWPNGKTF+ GDVL
Sbjct: 1  MGEGIRAMGTVMLCLVVLLLLQQPEVGSAAFHTVGDDLGWTFNVSSWPNGKTFKPGDVL 59

[Close]

BLAST of Carg08183 vs. NCBI nr
Match: XP_023514733.1 (basic blue protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 3.5e-18
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1  MGEGIRGVA---TVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGD 60
          MGE +RG A   TVMLCLV  LLLQQPEVGSAAIHTVGDDLGWTFNVSSWP GKTFQAGD
Sbjct: 1  MGERMRGAAAMGTVMLCLV--LLLQQPEVGSAAIHTVGDDLGWTFNVSSWPIGKTFQAGD 60

[Close]

BLAST of Carg08183 vs. ExPASy Swiss-Prot
Match: P60496 (Chemocyanin OS=Lilium longiflorum OX=4690 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 11 VMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 60
          ++L +V++ L+   EV  + ++TVGD  GWTF  S WP GKTF+AGDVL
Sbjct: 12 LVLGVVLVFLVFNCEVAESVVYTVGDGGGWTFGTSGWPAGKTFRAGDVL 60

[Close]

BLAST of Carg08183 vs. ExPASy TrEMBL
Match: A0A6J1FWW6 (basic blue protein-like OS=Cucurbita moschata OX=3662 GN=LOC111447705 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 60
          MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL
Sbjct: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 59

[Close]

BLAST of Carg08183 vs. ExPASy TrEMBL
Match: A0A6J1J240 (basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111482006 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 60
          MGEGIR + TVMLCLVVLLLLQQPEVGSAA HTVGDDLGWTFNVSSWPNGKTF+ GDVL
Sbjct: 1  MGEGIRAMGTVMLCLVVLLLLQQPEVGSAAFHTVGDDLGWTFNVSSWPNGKTFKPGDVL 59

[Close]

BLAST of Carg08183 vs. ExPASy TrEMBL
Match: A0A0A0L6J3 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G214590 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.9e-12
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVLG 60
          MGEGIRG + V   +  LLLLQQ ++G A I+ VG++LGWTFNVSSWP GK F AGD+L 
Sbjct: 1  MGEGIRGCSMVGKVVFCLLLLQQLKMGYATIYNVGEELGWTFNVSSWPIGKNFHAGDILA 60

Query: 61 IT 63
           +
Sbjct: 61 FS 62

[Close]

BLAST of Carg08183 vs. ExPASy TrEMBL
Match: A0A5A7TAK8 (Basic blue protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00040 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.8e-11
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 60
          MGEG RG + V   +  L L+QQ ++G A I+ VGD+LGWTFNVSSWP GK F AGD+L
Sbjct: 1  MGEGSRGCSMVEKVVFCLFLVQQLKMGYATIYNVGDELGWTFNVSSWPIGKNFHAGDIL 59

[Close]

BLAST of Carg08183 vs. ExPASy TrEMBL
Match: A0A1S3C342 (basic blue protein-like OS=Cucumis melo OX=3656 GN=LOC103496130 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.8e-11
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MGEGIRGVATVMLCLVVLLLLQQPEVGSAAIHTVGDDLGWTFNVSSWPNGKTFQAGDVL 60
          MGEG RG + V   +  L L+QQ ++G A I+ VGD+LGWTFNVSSWP GK F AGD+L
Sbjct: 1  MGEGSRGCSMVEKVVFCLFLVQQLKMGYATIYNVGDELGWTFNVSSWPIGKNFHAGDIL 59

The following BLAST results are available for this feature:

BLAST of Carg08183 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031005.1	4.6e-31	100.00	hypothetical protein SDJN02_05044, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022942770.1	6.5e-25	100.00	basic blue protein-like [Cucurbita moschata]	[more]
KAG6600349.1	1.9e-24	98.31	hypothetical protein SDJN03_05582, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022983401.1	6.7e-22	89.83	basic blue protein-like [Cucurbita maxima]	[more]
XP_023514733.1	3.5e-18	85.48	basic blue protein-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg08183 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P60496	1.3e-07	51.02	Chemocyanin OS=Lilium longiflorum OX=4690 PE=1 SV=1	[more]

BLAST of Carg08183 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWW6	3.1e-25	100.00	basic blue protein-like OS=Cucurbita moschata OX=3662 GN=LOC111447705 PE=4 SV=1	[more]
A0A6J1J240	3.3e-22	89.83	basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111482006 PE=4 SV=1	[more]
A0A0A0L6J3	8.9e-12	59.68	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G214590...	[more]
A0A5A7TAK8	9.8e-11	59.32	Basic blue protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C342	9.8e-11	59.32	basic blue protein-like OS=Cucumis melo OX=3656 GN=LOC103496130 PE=4 SV=1	[more]

BLAST of Carg08183 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 30..67 e-value: 1.1E-6 score: 30.8
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 30..59
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 30..69 score: 12.687639

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08183-RA	Carg08183-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
molecular_function	GO:0009055	electron transfer activity