Carg08159 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08159
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 2603782 .. 2605139 (-)
RNA-Seq ExpressionCarg08159
SyntenyCarg08159
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTGGCCACCGGCGTGTTCATAGGCAGTGGAGTGGGCAGGTGGTGATGGAGGATTGCGTTCGAGGTGAAGACCAACTGGGGACCACAAACCAGAGGTTTTATTGGGTTTGATAAACCTTCCACCTTCGCTAATACTCTTCCATTTTTAAAAATTTTTAAAAATACTTTAATTTAAAAAAAAAAATTAAAACAGGCCTCTAATTTTTTCTTTATCAAAATAAAAAAATATGTTGGTACACATTTAAAAAATATTTATGAATTTTTAAAAATAACATTAATTTTTTTTTAAAGATAAACATCGATAAATGGTTTCGTCTATATAATATCTTTTATTTTTATTTATAGAGATAATTAATTATACTTTTAAAATTTTATACTAAAGTACATTTTTGAATTTCTTTTTAAAAAAATTGAAGAATATTAATAAGAAAATTTTAAGTTTAAGAATATTTTTTAAAATTATTAAAAAAAAAATTGAAATAAATACTGACAAAGTTAATTATTAATTTTTTTTAAAATTAAAAATATTTTGAAGATAAAATAAAATTTACTAATATTTTTATTAATTTAGCCAAATTTTAAGTAAAAAATTTAATTAAAGATGGAGCCGAACAAAATTTTGGTCGGTCTTAAATATATATATATATATATTTTAAAAAAGCCCAAAATCCCGGATCCAAATTACCGGGTCGGTTATTGAATCGGATCAGAAGAAGTATTTGTTTCTTCTCCGCCCTTCTGTGCTGCTTCGAGTTCCTCCGGTCAGAATTGCGCACGCCACAATCAGCCACTGCTGCATCGTCGCTGCAGCCTCTTCTTTTTGCTCTCGACTTCCGATTTCTTCATCATCATCGATTTGTGAGCTTATTTCTCCGAACTTCGTATCTAGCTTCTTCATCAACATTGCCTTCCAGCTTCCAGTTTTGCTGCGGTAACCATTTCCCTCGTTCATCCCTATTTCATTTGTAATTTTGTATGCCTACCGTACTCGTTTCCTACGGAGATTTCCACCGCCTCATAGTATCACCGATTTTTTTTCTGGGGGGGAATGCGGGTGGTGGGTTATGGTTATGGGAATATTATCGTTCATATATCCAGGGTTTAGATAGGCAAAATTAATCATCTAATTTTTTTTTATTTGTTCTTAGCACGAGCTTCGTTTTAATTTTGAATTCAGTCTGTTTCTCTTCTCATAATTAACAATTGGAAGTTGGAACTCTTGCTCATTCTTTACTTGCTTGAACTGATGCCTAATGCTTTCCTTAATTTAGCTTTAGTGGTTGACATAGTTTGCTCCAATTATCTATTCTGTATATCATCTTTCCGTATAACTTGTTCTTTTTAGGTGTTAA

mRNA sequence

ATGGATTGTGGCCACCGGCGTGTTCATAGGCAGTGGAGTGGGCAGGTGGTGATGGAGGATTGCGTTCGAGGTGAAGACCAACTGGGGACCACAAACCAGAGCCCAAAATCCCGGATCCAAATTACCGGGTCGGTTATTGAATCGGATCAGAAGAAGTATTTGTTTCTTCTCCGCCCTTCTGTGCTGCTTCGAGTTCCTCCGGTCAGAATTGCGCACGCCACAATCAGCCACTGCTGCATCGTCGCTGCAGCCTCTTCTTTTTGCTCTCGACTTCCGATTTCTTCATCATCATCGATTTGTGAGCTTATTTCTCCGAACTTCGTATCTAGCTTCTTCATCAACATTGCCTTCCAGCTTCCAGTTTTGCTGCGGTGTTAA

Coding sequence (CDS)

ATGGATTGTGGCCACCGGCGTGTTCATAGGCAGTGGAGTGGGCAGGTGGTGATGGAGGATTGCGTTCGAGGTGAAGACCAACTGGGGACCACAAACCAGAGCCCAAAATCCCGGATCCAAATTACCGGGTCGGTTATTGAATCGGATCAGAAGAAGTATTTGTTTCTTCTCCGCCCTTCTGTGCTGCTTCGAGTTCCTCCGGTCAGAATTGCGCACGCCACAATCAGCCACTGCTGCATCGTCGCTGCAGCCTCTTCTTTTTGCTCTCGACTTCCGATTTCTTCATCATCATCGATTTGTGAGCTTATTTCTCCGAACTTCGTATCTAGCTTCTTCATCAACATTGCCTTCCAGCTTCCAGTTTTGCTGCGGTGTTAA

Protein sequence

MDCGHRRVHRQWSGQVVMEDCVRGEDQLGTTNQSPKSRIQITGSVIESDQKKYLFLLRPSVLLRVPPVRIAHATISHCCIVAAASSFCSRLPISSSSSICELISPNFVSSFFINIAFQLPVLLRC
Homology
[Close]
BLAST of Carg08159 vs. NCBI nr
Match: KAG7030982.1 (hypothetical protein SDJN02_05020, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.1 bits (632), Expect = 4.1e-62
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MDCGHRRVHRQWSGQVVMEDCVRGEDQLGTTNQSPKSRIQITGSVIESDQKKYLFLLRPS 60
           MDCGHRRVHRQWSGQVVMEDCVRGEDQLGTTNQSPKSRIQITGSVIESDQKKYLFLLRPS
Sbjct: 1   MDCGHRRVHRQWSGQVVMEDCVRGEDQLGTTNQSPKSRIQITGSVIESDQKKYLFLLRPS 60

Query: 61  VLLRVPPVRIAHATISHCCIVAAASSFCSRLPISSSSSICELISPNFVSSFFINIAFQLP 120
           VLLRVPPVRIAHATISHCCIVAAASSFCSRLPISSSSSICELISPNFVSSFFINIAFQLP
Sbjct: 61  VLLRVPPVRIAHATISHCCIVAAASSFCSRLPISSSSSICELISPNFVSSFFINIAFQLP 120

Query: 121 VLLRC 126
           VLLRC
Sbjct: 121 VLLRC 125

[Close]
BLAST of Carg08159 vs. NCBI nr
Match: KAG6600326.1 (hypothetical protein SDJN03_05559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MDCGHRRVHRQWSGQVVMEDCVRGEDQLGTTNQ 34
          MDCGHRRVHRQWSGQVVMEDCVRGEDQLGTTNQ
Sbjct: 1  MDCGHRRVHRQWSGQVVMEDCVRGEDQLGTTNQ 33

The following BLAST results are available for this feature:
BLAST of Carg08159 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030982.14.1e-62100.00hypothetical protein SDJN02_05020, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600326.11.6e-10100.00hypothetical protein SDJN03_05559, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg08159 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08159 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08159 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08159-RACarg08159-RAmRNA