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Carg08143 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGATTCAAAATTATCAAATTTAAAATGGACCTTTTGTTCAACACAAAAACTGTCAGTTTAATCGAATTCGTAGGGCGCGGAACGGAGGCGGCGAAAATCCACAGCTCTTCGACGACCGACAAAGATAAAGAATCGGTAGTTCACTGGAAGGTCGAAGAAACATTGCTGTTAGGGTAACAACCAGAAATTTTTGTTGATTGTTAGAGGAAATTTTCACAATTAGGGTTTTAGGGTTTCTGGAATATCATGTCATCCGGCAAGCTGAAGGATGGGGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGACGAACGCGCTTGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCGGGTGATTTTCACCAGGTACTTGAGTGATTTATGTTGTTTTATATTGCGTAAATTTTATTAGTGACTTCTGTCTGCGGTTTATTCTATCGTGGGCGTGTTTTCATGATGAATGGATGTAAAATTGTACCATTGCATTACTGGGATTGGTTAGCAACGAGTGTGATTCCTATCTTAGGTCTTATGATATGAAACAAACTGGTTTCCGTACATTACAGGTTCTTTAAATTCTTGCGACTGTTAGCTGGTAATGAGTGGAAGAACTGATTATTGGGGGAATTAGGCTGGGTGTGAACAACAATATTTCCCTTACCAAAGGTGTGAAAATCCAGACTATTACTGAATAAGGACGATGCCCCTTTCTTTGATGGAAATTTGAGTGAACAAAATTCCTATATTGGGTTTAGCTCATGGATGATTTTTTTCTTTTAATATATGGACGAAGGGGAGACATAGGGTTGGTGGGATGATTACAAAAATGTTCATAAACGAGTTGGAAAAGGTAGAATCCAAACCTGGCAAAAAGAGATAACGTACCTTGTTGGATTACAACTTTTAGATTTATGAGATCGGATGTTTGTAGATAATTGTAAAATCAGAACACTTAACTAGCTTATTGTGGTGGATTTCAAATTGTGTATTTGGCTCACAGTCGGATACAAGATAGTCGGTGTTCTTTTTAACTGGATGAAGCTTTTTTTCATTTACCATGTTAATATGTTGTTGTTATGCGTGATATATCATATATTTGATTAAAATGTTGTTATTAATTGTATGCTCACGCGGGAGTAGCATAGCAACTTAGCATTAACTATATGCTAGTTGGTTAGTACTTTCTTTACGATCAGATAATGTCTATGCTGAAGCTAAGACTTACTGGCTTCACCTTTTAGATTTTCACAGTGAAGAAAGTTTAAAATTATGGTGTGCTAGTTTGAGATTCAAAGCTGACTGCTGCCAAGCAGAATTTGATTTATTGGAGAGTTTGAAATGGATTGGAGCGATGATTTGTTCCACGCACTCGAATTTACGTATGACCTATCAAAGTTAGGTCGTTGGGGATACCATTAGGAAGTAATGATCGTTGAGTAGCAGTAGAGGGTTGACAAGTACTCTGTTTGCAAGCAATGCTCTGAAATCTTAGCTCGTGAAAATGCATCGCTTGCTTTGTTAGTTTTTGGTGTCGTCTAAGAAGGGTTAATGTCATTTAATATAAGTCAAAAGGACGAGGTTTATAAAAATACTGTTCGACGTGAAATAAATTCTTTAGTCTGGTGTTAAATGGGTCTTTCATATTTCGAATCTTGATGTAGTTAAGAAAGGTAATGTATTACAATCGGGAATTGAAAGTTTTTACCTACTCAAACATCATCGGATGATTCTGATGTGTTTAGGAAAGAAAGTCTCCACTTGTGTTGTTAAGCCTACAATTTTCACTTCAGATTGTAAATGCATCAGACCTACCTTTTTGTTTGATCTATTTATTTTCCTCTCCATCCTTGATAATGAGCAACTGTTTGCGAGTTTGTGGAATCTGTCTCGATCGTTGAATATATATACTAATACGGGCCTGCCCATCAAATTTTCGAATGACAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAATTGAATTCAGGCGGAGGAGATGAGAATCAGAAAGATGCATCCTCTGGTGATGATGGGGATACCGATAATGGCGAGGATGAAGCAACATGACTCGTTATTCTCCACCCGGAATCGAAGTTTGAACTCTTAGCCTCGAGCTTTCAGACGAGCCATCTAACCGGAGACAGCCACCAGTCTGCCTACTTGACATTTTACGGGTCCGTAATTCCTTATATAAATTGTAGTACCTGGAATCTGGCTTTTGTGTTTTTATTGCAGGTGGGATTGGAAGAATGATGCATTTGAATACACAATTCTCCCATCTTCCCACAGGACCTCTATCTTTCTCTCAATTGCATGGCGCTGAAATGTGTTAGCAGAATATCTATAACATTATTACATGTTGAACAGATTGACATAATATTAGTCGAGTCCGAGGGATACTCATGATTGTGTTATAACGATTCGTTGCTTATGATATATGAACAGAGGGGACGTTGATCTACGATCAGACAACCCTGACATGCTCGTAGAAACACTGACTATATCATTCATATTGAACGCTCATTAGGCTCATATCCTGTTGCTTAGATGCTCACGCGGGCCTAACATAGCACGAAACACATCTCTTAGGCGTTCACACGGGTTTAGTGTACCCGTGCACAATCCCTCTGAAGGAGAACGATAATCTGGATTTTCCTCCCTATAAGTATCTCATACATACTAAGCTAATAATGCTTTTCTCGA AGATTCAAAATTATCAAATTTAAAATGGACCTTTTGTTCAACACAAAAACTGTCAGTTTAATCGAATTCGTAGGGCGCGGAACGGAGGCGGCGAAAATCCACAGCTCTTCGACGACCGACAAAGATAAAGAATCGGTAGTTCACTGGAAGGTCGAAGAAACATTGCTGTTAGGGTAACAACCAGAAATTTTTGTTGATTGTTAGAGGAAATTTTCACAATTAGGGTTTTAGGGTTTCTGGAATATCATGTCATCCGGCAAGCTGAAGGATGGGGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGACGAACGCGCTTGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCGGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAATTGAATTCAGGCGGAGGAGATGAGAATCAGAAAGATGCATCCTCTGGTGATGATGGGGATACCGATAATGGCGAGGATGAAGCAACATGACTCGTTATTCTCCACCCGGAATCGAAGTTTGAACTCTTAGCCTCGAGCTTTCAGACGAGCCATCTAACCGGAGACAGCCACCAGTCTGCCTACTTGACATTTTACGGGTCCGTAATTCCTTATATAAATTGTAGTACCTGGAATCTGGCTTTTGTGTTTTTATTGCAGGTGGGATTGGAAGAATGATGCATTTGAATACACAATTCTCCCATCTTCCCACAGGACCTCTATCTTTCTCTCAATTGCATGGCGCTGAAATGTGTTAGCAGAATATCTATAACATTATTACATGTTGAACAGATTGACATAATATTAGTCGAGTCCGAGGGATACTCATGATTGTGTTATAACGATTCGTTGCTTATGATATATGAACAGAGGGGACGTTGATCTACGATCAGACAACCCTGACATGCTCGTAGAAACACTGACTATATCATTCATATTGAACGCTCATTAGGCTCATATCCTGTTGCTTAGATGCTCACGCGGGCCTAACATAGCACGAAACACATCTCTTAGGCGTTCACACGGGTTTAGTGTACCCGTGCACAATCCCTCTGAAGGAGAACGATAATCTGGATTTTCCTCCCTATAAGTATCTCATACATACTAAGCTAATAATGCTTTTCTCGA ATGTCATCCGGCAAGCTGAAGGATGGGGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGACGAACGCGCTTGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCGGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAATTGAATTCAGGCGGAGGAGATGAGAATCAGAAAGATGCATCCTCTGGTGATGATGGGGATACCGATAATGGCGAGGATGAAGCAACATGA MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDDGDTDNGEDEAT Homology
BLAST of Carg08143 vs. NCBI nr
Match: KAG6600308.1 (PRKR-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030967.1 PRKR-interacting protein 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 309.3 bits (791), Expect = 2.1e-80 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Carg08143 vs. NCBI nr
Match: XP_023512975.1 (PRKR-interacting protein 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 306.6 bits (784), Expect = 1.4e-79 Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Carg08143 vs. NCBI nr
Match: XP_022941948.1 (PRKR-interacting protein 1 [Cucurbita moschata]) HSP 1 Score: 302.8 bits (774), Expect = 2.0e-78 Identity = 169/173 (97.69%), Postives = 172/173 (99.42%), Query Frame = 0
BLAST of Carg08143 vs. NCBI nr
Match: XP_022983002.1 (PRKR-interacting protein 1 [Cucurbita maxima]) HSP 1 Score: 302.4 bits (773), Expect = 2.6e-78 Identity = 168/173 (97.11%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Carg08143 vs. NCBI nr
Match: XP_022149170.1 (PRKR-interacting protein 1 [Momordica charantia]) HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73 Identity = 160/173 (92.49%), Postives = 170/173 (98.27%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy Swiss-Prot
Match: Q2KIT1 (PRKR-interacting protein 1 OS=Bos taurus OX=9913 GN=PRKRIP1 PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 5.5e-07 Identity = 63/175 (36.00%), Postives = 89/175 (50.86%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy Swiss-Prot
Match: Q9H875 (PRKR-interacting protein 1 OS=Homo sapiens OX=9606 GN=PRKRIP1 PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06 Identity = 60/177 (33.90%), Postives = 89/177 (50.28%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy Swiss-Prot
Match: Q5R5J3 (PRKR-interacting protein 1 OS=Pongo abelii OX=9601 GN=PRKRIP1 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06 Identity = 60/177 (33.90%), Postives = 89/177 (50.28%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy Swiss-Prot
Match: Q9CWV6 (PRKR-interacting protein 1 OS=Mus musculus OX=10090 GN=Prkrip1 PE=1 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06 Identity = 63/178 (35.39%), Postives = 89/178 (50.00%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy Swiss-Prot
Match: Q5ZKU0 (PRKR-interacting protein 1 homolog OS=Gallus gallus OX=9031 GN=PRKRIP1 PE=2 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 3.0e-05 Identity = 59/175 (33.71%), Postives = 88/175 (50.29%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy TrEMBL
Match: A0A6J1FTH7 (PRKR-interacting protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447158 PE=4 SV=1) HSP 1 Score: 302.8 bits (774), Expect = 9.5e-79 Identity = 169/173 (97.69%), Postives = 172/173 (99.42%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy TrEMBL
Match: A0A6J1IY34 (PRKR-interacting protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111481671 PE=4 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78 Identity = 168/173 (97.11%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy TrEMBL
Match: A0A6J1D4Z8 (PRKR-interacting protein 1 OS=Momordica charantia OX=3673 GN=LOC111017661 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 5.4e-74 Identity = 160/173 (92.49%), Postives = 170/173 (98.27%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy TrEMBL
Match: A0A0A0L705 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199600 PE=4 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71 Identity = 159/173 (91.91%), Postives = 165/173 (95.38%), Query Frame = 0
BLAST of Carg08143 vs. ExPASy TrEMBL
Match: A0A1S3C2Q3 (PRKR-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103496186 PE=4 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 9.5e-71 Identity = 156/173 (90.17%), Postives = 166/173 (95.95%), Query Frame = 0
BLAST of Carg08143 vs. TAIR 10
Match: AT2G15270.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink). ) HSP 1 Score: 159.8 bits (403), Expect = 1.9e-39 Identity = 108/180 (60.00%), Postives = 133/180 (73.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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