Carg08140 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08140
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLYR motif-containing protein At3g19508
LocationCarg_Chr04: 2497656 .. 2498395 (+)
RNA-Seq ExpressionCarg08140
SyntenyCarg08140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGGCCTCACTATCGTGAAGTAATAAACGTGGAAAAGGGACTTACCTGGCCCAAACAGCACTCAAAAGCCCTAGAAACTGAAGCGATCGAGATCGAGAACCAGACGGCGGAGCATTTCGATCGGAGAGAAATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCGTTTGGGTTCTCAATAAGGTTACACTCTAATCCTTCAATTAATCTTTCAGTTTCGTAATTGTTTCTGTATCGATTCGCGTTGATTGCATCGATCCGATCCGTTTTGAGCGTTTCCGGTGATTGGCAGTATTCGGTCAATGGATCTGCGGCGGATAAGCTGAAGGAGATTTGTAATAGCTCCTAGTTAGTGTGCGATTTCCGTCATTTGTTTGAAATAATGCCTCAAAGGGATCGGCGTTGGCTTTTGCCCTTGCAACTCCGGCTACTACTGCCGCCGTGGATTCTGACGAATTCGTTGCCGGTACGCTTTTGGAGGATTATTGAATTAAAAATTTTTATGTTCTTCACGTTGAAAAATAATGTTTGCAAATTATGTTTATAGGATAATTGAGAATAAGTTGTCTATTTAATCAGATAATTGTTTATATAAA

mRNA sequence

ATTGGGCCTCACTATCGTGAAGTAATAAACGTGGAAAAGGGACTTACCTGGCCCAAACAGCACTCAAAAGCCCTAGAAACTGAAGCGATCGAGATCGAGAACCAGACGGCGGAGCATTTCGATCGGAGAGAAATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCGTTTGGGTTCTCAATAAGTATTCGGTCAATGGATCTGCGGCGGATAAGCTGAAGGAGATTTGTAATAGCTCCTAGTTAGTGTGCGATTTCCGTCATTTGTTTGAAATAATGCCTCAAAGGGATCGGCGTTGGCTTTTGCCCTTGCAACTCCGGCTACTACTGCCGCCGTGGATTCTGACGAATTCGTTGCCGGTACGCTTTTGGAGGATTATTGAATTAAAAATTTTTATGTTCTTCACGTTGAAAAATAATGTTTGCAAATTATGTTTATAGGATAATTGAGAATAAGTTGTCTATTTAATCAGATAATTGTTTATATAAA

Coding sequence (CDS)

ATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCGTTTGGGTTCTCAATAAGTATTCGGTCAATGGATCTGCGGCGGATAAGCTGAAGGAGATTTGTAATAGCTCCTAG

Protein sequence

MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS
Homology
BLAST of Carg08140 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo] >KAG6600304.1 LYR motif-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030964.1 LYR motif-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 2.8e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVNGSAADKLKEICNSS 84
          WVLNKYSVNGSAADKLKEICNSS
Sbjct: 61 WVLNKYSVNGSAADKLKEICNSS 83

BLAST of Carg08140 vs. NCBI nr
Match: XP_022983545.1 (LYR motif-containing protein At3g19508 [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELF+RAYNHSV
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60

Query: 61 WVLNKYSVNGSAADKLKEICNSS 84
          WVLNKYSVNGSAADKLKEICNSS
Sbjct: 61 WVLNKYSVNGSAADKLKEICNSS 83

BLAST of Carg08140 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 LYR motif-containing protein [Cucumis melo var. makuwa] >TYK13881.1 LYR motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 3.7e-35
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEICNS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of Carg08140 vs. NCBI nr
Match: XP_038898400.1 (LYR motif-containing protein At3g19508 [Benincasa hispida])

HSP 1 Score: 157.1 bits (396), Expect = 6.4e-35
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIY EVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAY HS+
Sbjct: 1  MEKALRIYGEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYKHSL 60

Query: 61 WVLNKYSVNGSAADKLKEICNS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of Carg08140 vs. NCBI nr
Match: XP_004140718.1 (LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_011093 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKYSV+GSAADKLKEIC
Sbjct: 61 WVLNKYSVDGSAADKLKEIC 80

BLAST of Carg08140 vs. ExPASy Swiss-Prot
Match: Q1G3M2 (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.6e-27
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+K LR+Y  V+RLVR LP DSRPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVL KYS++ SAA KLKEIC
Sbjct: 61 WVLKKYSIDESAATKLKEIC 79

BLAST of Carg08140 vs. ExPASy Swiss-Prot
Match: A9SNJ1 (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 8  YAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNK 66
          Y EVL+LV+RLP  SR YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Sbjct: 9  YREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A6J1FPX9 (LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC111447159 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVNGSAADKLKEICNSS 84
          WVLNKYSVNGSAADKLKEICNSS
Sbjct: 61 WVLNKYSVNGSAADKLKEICNSS 83

BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A6J1J656 (LYR motif-containing protein At3g19508 OS=Cucurbita maxima OX=3661 GN=LOC111482114 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.7e-38
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELF+RAYNHSV
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60

Query: 61 WVLNKYSVNGSAADKLKEICNSS 84
          WVLNKYSVNGSAADKLKEICNSS
Sbjct: 61 WVLNKYSVNGSAADKLKEICNSS 83

BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A5A7T6G8 (LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00680 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEICNS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A1S3C3W4 (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEICNS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A0A0L970 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.9e-34
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKYSV+GSAADKLKEIC
Sbjct: 61 WVLNKYSVDGSAADKLKEIC 80

BLAST of Carg08140 vs. TAIR 10
Match: AT3G19508.1 (unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 4.7e-28
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+K LR+Y  V+RLVR LP DSRPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVL KYS++ SAA KLKEIC
Sbjct: 61 WVLKKYSIDESAATKLKEIC 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022941949.12.8e-38100.00LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ... [more]
XP_022983545.11.8e-3798.80LYR motif-containing protein At3g19508 [Cucurbita maxima][more]
XP_008456173.13.7e-3592.68PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 L... [more]
XP_038898400.16.4e-3593.90LYR motif-containing protein At3g19508 [Benincasa hispida][more]
XP_004140718.12.1e-3390.00LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Q1G3M26.6e-2773.75LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
A9SNJ18.7e-1156.90LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 G... [more]
Match NameE-valueIdentityDescription
A0A6J1FPX91.3e-38100.00LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A6J1J6568.7e-3898.80LYR motif-containing protein At3g19508 OS=Cucurbita maxima OX=3661 GN=LOC1114821... [more]
A0A5A7T6G81.8e-3592.68LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3C3W41.8e-3592.68LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P... [more]
A0A0A0L9709.9e-3490.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G19508.14.7e-2873.75unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in ... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 4..56
e-value: 7.6E-6
score: 25.9
NoneNo IPR availablePANTHERPTHR36758OS01G0342800 PROTEINcoord: 1..82
NoneNo IPR availableCDDcd20269Complex1_LYR_LYRM9coord: 4..65
e-value: 4.0402E-22
score: 78.8231

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08140-RACarg08140-RAmRNA