Carg08140 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTGGGCCTCACTATCGTGAAGTAATAAACGTGGAAAAGGGACTTACCTGGCCCAAACAGCACTCAAAAGCCCTAGAAACTGAAGCGATCGAGATCGAGAACCAGACGGCGGAGCATTTCGATCGGAGAGAAATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCGTTTGGGTTCTCAATAAGGTTACACTCTAATCCTTCAATTAATCTTTCAGTTTCGTAATTGTTTCTGTATCGATTCGCGTTGATTGCATCGATCCGATCCGTTTTGAGCGTTTCCGGTGATTGGCAGTATTCGGTCAATGGATCTGCGGCGGATAAGCTGAAGGAGATTTGTAATAGCTCCTAGTTAGTGTGCGATTTCCGTCATTTGTTTGAAATAATGCCTCAAAGGGATCGGCGTTGGCTTTTGCCCTTGCAACTCCGGCTACTACTGCCGCCGTGGATTCTGACGAATTCGTTGCCGGTACGCTTTTGGAGGATTATTGAATTAAAAATTTTTATGTTCTTCACGTTGAAAAATAATGTTTGCAAATTATGTTTATAGGATAATTGAGAATAAGTTGTCTATTTAATCAGATAATTGTTTATATAAA ATTGGGCCTCACTATCGTGAAGTAATAAACGTGGAAAAGGGACTTACCTGGCCCAAACAGCACTCAAAAGCCCTAGAAACTGAAGCGATCGAGATCGAGAACCAGACGGCGGAGCATTTCGATCGGAGAGAAATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCGTTTGGGTTCTCAATAAGTATTCGGTCAATGGATCTGCGGCGGATAAGCTGAAGGAGATTTGTAATAGCTCCTAGTTAGTGTGCGATTTCCGTCATTTGTTTGAAATAATGCCTCAAAGGGATCGGCGTTGGCTTTTGCCCTTGCAACTCCGGCTACTACTGCCGCCGTGGATTCTGACGAATTCGTTGCCGGTACGCTTTTGGAGGATTATTGAATTAAAAATTTTTATGTTCTTCACGTTGAAAAATAATGTTTGCAAATTATGTTTATAGGATAATTGAGAATAAGTTGTCTATTTAATCAGATAATTGTTTATATAAA ATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCGTTTGGGTTCTCAATAAGTATTCGGTCAATGGATCTGCGGCGGATAAGCTGAAGGAGATTTGTAATAGCTCCTAG MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS Homology
BLAST of Carg08140 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo] >KAG6600304.1 LYR motif-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030964.1 LYR motif-containing protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 168.3 bits (425), Expect = 2.8e-38 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of Carg08140 vs. NCBI nr
Match: XP_022983545.1 (LYR motif-containing protein At3g19508 [Cucurbita maxima]) HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37 Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of Carg08140 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 LYR motif-containing protein [Cucumis melo var. makuwa] >TYK13881.1 LYR motif-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 157.9 bits (398), Expect = 3.7e-35 Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of Carg08140 vs. NCBI nr
Match: XP_038898400.1 (LYR motif-containing protein At3g19508 [Benincasa hispida]) HSP 1 Score: 157.1 bits (396), Expect = 6.4e-35 Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0
BLAST of Carg08140 vs. NCBI nr
Match: XP_004140718.1 (LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_011093 [Cucumis sativus]) HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33 Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0
BLAST of Carg08140 vs. ExPASy Swiss-Prot
Match: Q1G3M2 (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 6.6e-27 Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0
BLAST of Carg08140 vs. ExPASy Swiss-Prot
Match: A9SNJ1 (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 8.7e-11 Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0
BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A6J1FPX9 (LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC111447159 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A6J1J656 (LYR motif-containing protein At3g19508 OS=Cucurbita maxima OX=3661 GN=LOC111482114 PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 8.7e-38 Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A5A7T6G8 (LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00680 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35 Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A1S3C3W4 (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35 Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of Carg08140 vs. ExPASy TrEMBL
Match: A0A0A0L970 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 9.9e-34 Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0
BLAST of Carg08140 vs. TAIR 10
Match: AT3G19508.1 (unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 120.9 bits (302), Expect = 4.7e-28 Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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