Carg08116 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08116
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cysteine-rich and transmembrane domain-containing protein WIH2-like
Location	Carg_Chr04: 2358063 .. 2359874 (+)
RNA-Seq Expression	Carg08116
Synteny	Carg08116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAAGTTGAATTAAGAAGACTGCTTAGAGATAAGCCTCCCCGGATTCGCAGCGAACAAACAAAACCCTCTCTCTCGGTAATCTCAACTCTTCTTTCTTGATTGTATATATAAATCCGACCAACGCTGTCTTCTCCATCAACACTTTCTCCTTCATTCGTTTCTCATTCTGTGAATCCGGCCGCTTTTGTCATCGTCTTCGTCGTCCGGCGGAGAAGGTCATTGTCTGGTTTGGTTGTGTTCGTCGGGGGATTCATCGTCTGTGGTTGATTTCAAGAGGAAGAAGGGATGAGTTATTATAATCAAGGTCAGCCGCCGGTTGGAGTGCCTCCGCCTCAAGGTATTTCGTCGTTTCTATTGTGTTTTTTTTGGTGTTCTGGTGGTTTGGAGTTTTGGAGTTGAAACAAGGGGGTTTGTGGTGTGCGATTGTAGATCTGGATGTTCGTTTGTGTTGATTTAGGGTTTTGGTGGTGGTTTTTCAGGTTATCCGCCAGAAGGTTATCCAAAGGATGCTTATCCGCCACAAGGCTATCCTCCTCCCGGATCTTATCCGCCGCAGGGATACCCTCCGCCTTACGCTCCTCAGTACGCGCAACCTCCTCCTCAACAACAGCAGAACAGCGGCCCTGGTTGCATGGAAGGCTGGTAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATTTCTCTATCTTTTTGTTCATGGCGGCTGAACTCGGATCTGATCTGAATCGGATTCCGATGATTTGGTATCGGAAACTGAGTTTCATCGGTAAAGAGTTTAGCCTCCTTTTCATCGGAGACGTTTTTCTTGGAATTATCGCCCCGGTGAAATCCCCAAATTAACCCCCAATTAGCCTCCAAATTACAGTCATTCAAACTTTTCAAATCTCATCGTTCACCCTCTTAAATCCATTAACATTTTCCATTGACCTTTCAATGATTACAAAAATTCTCAAACTACGCTAGAAATTTGGTACAATTCAATCCTTCATATTAGATTGTTATAACTAATTTTGTGTCTAATATGAACTCTGCAGTTTAGCTGCGCTGTGCTGTTGCTGCCTGCTTGACGCTTGCTTCTAAACAGAAACATCCATTTACTATTATGCTGTGCTTCAAAGTCTTAAGAAGATCGATCTCTCAGTAAACTTTTCTCTGAATGCAAAGGAAAAAAGAAAAAAAATGGAAAAACAATCGAGTTGATGATTTAATTACTTGCGTTTTATTATAATATTTTAGTTTAGTGCTTGTTCTTCGTTTCCTCCTCTTCACCTCTCTACATTTTTCATAATAAATAACACCATCTCTCCCCAATTATCTGTTTTCTCTTTCGCTCTCTCTCTTGGTTTCCTATGATCGATGGGTTTCTTTTTGGATCATCTGTGTTCTTGAGATACGATTCCAAATTTTACAGTTCATGATATTGGACTAACTCCATTGATATGATATACCTTGTTATGTTAGTGAAGTTTTTGGGTTTTCTTGTGAATCGCATCGTTTCGATTGGACTATACCCTTGAAAAAATTAGACCTTCAAACCAGATTGCCTTTCAGAGATGTGGTGGCCAGCGAAGCAGAAGATATATGGTGAGTAGCGCAGTGGGTGCTCCTGCCCCGTCCTTGTCCCGCCCACCCACGGCATGTTGGTGTCGCATGCGGGCGCCATCGCATCATAACACCACGATTCTTCATGATGCCTTCAACGCTCCCCAACGTTTTAAATGATTATATTTGATGGCCCCGATCTTTTTAGAAAAATTGCTAATAATTCATAACAAAATATATATATATATA

mRNA sequence

AAATTAAGTTGAATTAAGAAGACTGCTTAGAGATAAGCCTCCCCGGATTCGCAGCGAACAAACAAAACCCTCTCTCTCGGTAATCTCAACTCTTCTTTCTTGATTGTATATATAAATCCGACCAACGCTGTCTTCTCCATCAACACTTTCTCCTTCATTCGTTTCTCATTCTGTGAATCCGGCCGCTTTTGTCATCGTCTTCGTCGTCCGGCGGAGAAGGTCATTGTCTGGTTTGGTTGTGTTCGTCGGGGGATTCATCGTCTGTGGTTGATTTCAAGAGGAAGAAGGGATGAGTTATTATAATCAAGGTCAGCCGCCGGTTGGAGTGCCTCCGCCTCAAGGTTATCCGCCAGAAGGTTATCCAAAGGATGCTTATCCGCCACAAGGCTATCCTCCTCCCGGATCTTATCCGCCGCAGGGATACCCTCCGCCTTACGCTCCTCAGTACGCGCAACCTCCTCCTCAACAACAGCAGAACAGCGGCCCTGGTTGCATGGAAGGCTGTTTAGCTGCGCTGTGCTGTTGCTGCCTGCTTGACGCTTGCTTCTAAACAGAAACATCCATTTACTATTATGCTGTGCTTCAAAGTCTTAAGAAGATCGATCTCTCAGTAAACTTTTCTCTGAATGCAAAGGAAAAAAGAAAAAAAATGGAAAAACAATCGAGTTGATGATTTAATTACTTGCGTTTTATTATAATATTTTAGTTTAGTGCTTGTTCTTCGTTTCCTCCTCTTCACCTCTCTACATTTTTCATAATAAATAACACCATCTCTCCCCAATTATCTGTTTTCTCTTTCGCTCTCTCTCTTGGTTTCCTATGATCGATGGGTTTCTTTTTGGATCATCTGTGTTCTTGAGATACGATTCCAAATTTTACAGTTCATGATATTGGACTAACTCCATTGATATGATATACCTTGTTATGTTAGTGAAGTTTTTGGGTTTTCTTGTGAATCGCATCGTTTCGATTGGACTATACCCTTGAAAAAATTAGACCTTCAAACCAGATTGCCTTTCAGAGATGTGGTGGCCAGCGAAGCAGAAGATATATGGTGAGTAGCGCAGTGGGTGCTCCTGCCCCGTCCTTGTCCCGCCCACCCACGGCATGTTGGTGTCGCATGCGGGCGCCATCGCATCATAACACCACGATTCTTCATGATGCCTTCAACGCTCCCCAACGTTTTAAATGATTATATTTGATGGCCCCGATCTTTTTAGAAAAATTGCTAATAATTCATAACAAAATATATATATATATA

Coding sequence (CDS)

ATGAGTTATTATAATCAAGGTCAGCCGCCGGTTGGAGTGCCTCCGCCTCAAGGTTATCCGCCAGAAGGTTATCCAAAGGATGCTTATCCGCCACAAGGCTATCCTCCTCCCGGATCTTATCCGCCGCAGGGATACCCTCCGCCTTACGCTCCTCAGTACGCGCAACCTCCTCCTCAACAACAGCAGAACAGCGGCCCTGGTTGCATGGAAGGCTGTTTAGCTGCGCTGTGCTGTTGCTGCCTGCTTGACGCTTGCTTCTAA

Protein sequence

MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQQQNSGPGCMEGCLAALCCCCLLDACF

Homology

[Close]

BLAST of Carg08116 vs. NCBI nr
Match: XP_022942954.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita moschata] >XP_022988711.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita maxima] >XP_023516260.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo] >KAG6600280.1 hypothetical protein SDJN03_05513, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030940.1 hypothetical protein SDJN02_04977 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.6 bits (457), Expect = 5.6e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQ 60
          MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQ
Sbjct: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQ 60

Query: 61 QQNSGPGCMEGCLAALCCCCLLDACF 87
          QQNSGPGCMEGCLAALCCCCLLDACF
Sbjct: 61 QQNSGPGCMEGCLAALCCCCLLDACF 86

[Close]

BLAST of Carg08116 vs. NCBI nr
Match: XP_011652909.1 (cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus] >KGN52747.1 hypothetical protein Csa_015060 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 3.7e-38
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDA-----YPPQGYPPPGSYPPQGYPPPYAPQYAQ 60
          MSYYNQGQPP+GVPPPQGYPPEGYPKDA     YPPQGYPPPG+YPPQGYPPPYAPQYAQ
Sbjct: 1  MSYYNQGQPPIGVPPPQGYPPEGYPKDAYPPPGYPPQGYPPPGAYPPQGYPPPYAPQYAQ 60

Query: 61 PPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
          PPPQQQ +SGPGC+EGCLAALCCCCLLDACF
Sbjct: 61 PPPQQQHSSGPGCLEGCLAALCCCCLLDACF 91

[Close]

BLAST of Carg08116 vs. NCBI nr
Match: XP_008454408.1 (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 9.2e-37
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDA-----YPPQGYPPPGSYPPQGYPPPYAPQYAQ 60
          MSYYNQGQPP+GVPPPQGYPPEGYPKDA     YPPQGYPPPG+YPPQGYPPPYAPQYAQ
Sbjct: 1  MSYYNQGQPPIGVPPPQGYPPEGYPKDAYPPPGYPPQGYPPPGAYPPQGYPPPYAPQYAQ 60

Query: 61 PPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
          PPP QQQ+SGPGC+EGCLAALCCCCLLDACF
Sbjct: 61 PPP-QQQSSGPGCLEGCLAALCCCCLLDACF 90

[Close]

BLAST of Carg08116 vs. NCBI nr
Match: XP_038905303.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 1.6e-36
Identity = 79/91 (86.81%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDA-----YPPQGYPPPGSYPPQGYPPPYAPQYAQ 60
          MSYYNQGQPP+GVPPPQGYPPEGYPKDA     YPPQGYPPPG+YPP GYPPPYAPQYAQ
Sbjct: 1  MSYYNQGQPPIGVPPPQGYPPEGYPKDAYPPPGYPPQGYPPPGAYPPPGYPPPYAPQYAQ 60

Query: 61 PPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
           PPQQQ +SGPGC+EGCLAALCCCCLLDACF
Sbjct: 61 APPQQQSSSGPGCLEGCLAALCCCCLLDACF 91

[Close]

BLAST of Carg08116 vs. NCBI nr
Match: XP_022149329.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica charantia] >XP_022149330.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica charantia])

HSP 1 Score: 156.8 bits (395), Expect = 8.6e-35
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDA----------YPPQGYPPPGSYPPQGYPPPYA 60
          MSYYNQGQPP+GVPPPQGYPPEGYPKDA          YPPQGYPPPG+YP QGYPPPYA
Sbjct: 1  MSYYNQGQPPIGVPPPQGYPPEGYPKDAYPPQGYPPAGYPPQGYPPPGAYPQQGYPPPYA 60

Query: 61 PQYAQPPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
          PQY QPPP QQQ+SGPGC+EGCLAALCCCCLLDACF
Sbjct: 61 PQYGQPPP-QQQSSGPGCLEGCLAALCCCCLLDACF 95

[Close]

BLAST of Carg08116 vs. ExPASy Swiss-Prot
Match: Q8S8M0 (Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis thaliana OX=3702 GN=WIH2 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-30
Identity = 72/100 (72.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPG--------------SYPPQGYP 60
          MS YN  QPPVGVPPPQGYPPEGYPKDAYPPQGYPP G               YP QGYP
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PPYAPQYAQPPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
          PPYAPQY  PP  QQQ S PG +EGCLAALCCCCLLDACF
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCCLLDACF 98

[Close]

BLAST of Carg08116 vs. ExPASy Swiss-Prot
Match: Q9FJW3 (Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis thaliana OX=3702 GN=WIH1 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-20
Identity = 60/87 (68.97%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 4  YNQGQPPVGVPPPQGYPP-EGYPKDAYPPQGYPPPG---SYPPQGYPPPYAPQYAQPPPQ 63
          Y+Q Q PVG PPPQGYPP +GYP   YPP GYPPPG    YP QGYPP   PQY+Q  PQ
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP---PQYSQ-APQ 61

Query: 64 QQQNSGPGCMEGCLAALCCCCLLDACF 87
          Q+QN+  G +EGCLAALCCCCLLDACF
Sbjct: 62 QKQNA--GMLEGCLAALCCCCLLDACF 82

[Close]

BLAST of Carg08116 vs. ExPASy Swiss-Prot
Match: Q8LCL8 (Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=At3g57160 PE=3 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-16
Identity = 57/100 (57.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 5   NQGQPPVGVPPPQGYPPEGYPKDAYPP-------QGYPPPGSYPPQGYPPP-YAPQ---- 64
           +Q  P VGVPP   YP EG PKDAYPP       QGYPPP  YP QGYPP  Y PQ    
Sbjct: 2   SQQPPAVGVPPSHAYPAEGPPKDAYPPPGQPYPQQGYPPPQGYPQQGYPPQGYPPQGYPE 61

Query: 65  --YAQ----PPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
             Y Q    P  QQQQ   PG +EGC+AALCC C+LDACF
Sbjct: 62  QGYPQQGYPPQQQQQQKHSPGMLEGCIAALCCYCVLDACF 101

[Close]

BLAST of Carg08116 vs. ExPASy Swiss-Prot
Match: Q17094 (Rhodopsin (Fragment) OS=Alloteuthis subulata OX=54069 GN=RHO PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-07
Identity = 35/58 (60.34%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 2   SYYNQGQPPVGV--PPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPP 58
           +Y  QG PP G   PPPQGYPP+GYP   YPPQGYPP    PPQG PP   P  A PP
Sbjct: 382 AYPPQGYPPQGYPPPPPQGYPPQGYPPQGYPPQGYPP----PPQGPPPQGPPPQAAPP 435

[Close]

BLAST of Carg08116 vs. ExPASy Swiss-Prot
Match: P24603 (Rhodopsin OS=Loligo forbesii OX=6618 GN=RHO PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-07
Identity = 37/64 (57.81%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 2   SYYNQGQPPVGV--PPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQ 61
           +Y  QG PP G   PPPQGYPP+GYP   YPPQGYPP    PPQG PPP  P     PPQ
Sbjct: 389 AYPPQGYPPQGYPPPPPQGYPPQGYPPQGYPPQGYPP----PPQG-PPPQGPPPQAAPPQ 447

Query: 62  QQQN 64
              N
Sbjct: 449 GVDN 447

[Close]

BLAST of Carg08116 vs. ExPASy TrEMBL
Match: A0A6J1JI08 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita maxima OX=3661 GN=LOC111485962 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.7e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQ 60
          MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQ
Sbjct: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQ 60

Query: 61 QQNSGPGCMEGCLAALCCCCLLDACF 87
          QQNSGPGCMEGCLAALCCCCLLDACF
Sbjct: 61 QQNSGPGCMEGCLAALCCCCLLDACF 86

[Close]

BLAST of Carg08116 vs. ExPASy TrEMBL
Match: A0A6J1FSU9 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita moschata OX=3662 GN=LOC111447832 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.7e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQ 60
          MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQ
Sbjct: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQ 60

Query: 61 QQNSGPGCMEGCLAALCCCCLLDACF 87
          QQNSGPGCMEGCLAALCCCCLLDACF
Sbjct: 61 QQNSGPGCMEGCLAALCCCCLLDACF 86

[Close]

BLAST of Carg08116 vs. ExPASy TrEMBL
Match: A0A0A0KWC5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000680 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-38
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDA-----YPPQGYPPPGSYPPQGYPPPYAPQYAQ 60
          MSYYNQGQPP+GVPPPQGYPPEGYPKDA     YPPQGYPPPG+YPPQGYPPPYAPQYAQ
Sbjct: 1  MSYYNQGQPPIGVPPPQGYPPEGYPKDAYPPPGYPPQGYPPPGAYPPQGYPPPYAPQYAQ 60

Query: 61 PPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
          PPPQQQ +SGPGC+EGCLAALCCCCLLDACF
Sbjct: 61 PPPQQQHSSGPGCLEGCLAALCCCCLLDACF 91

[Close]

BLAST of Carg08116 vs. ExPASy TrEMBL
Match: A0A1S3BZB4 (cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo OX=3656 GN=LOC103494821 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.5e-37
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDA-----YPPQGYPPPGSYPPQGYPPPYAPQYAQ 60
          MSYYNQGQPP+GVPPPQGYPPEGYPKDA     YPPQGYPPPG+YPPQGYPPPYAPQYAQ
Sbjct: 1  MSYYNQGQPPIGVPPPQGYPPEGYPKDAYPPPGYPPQGYPPPGAYPPQGYPPPYAPQYAQ 60

Query: 61 PPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
          PPP QQQ+SGPGC+EGCLAALCCCCLLDACF
Sbjct: 61 PPP-QQQSSGPGCLEGCLAALCCCCLLDACF 90

[Close]

BLAST of Carg08116 vs. ExPASy TrEMBL
Match: A0A6J1D5E9 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica charantia OX=3673 GN=LOC111017767 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.2e-35
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDA----------YPPQGYPPPGSYPPQGYPPPYA 60
          MSYYNQGQPP+GVPPPQGYPPEGYPKDA          YPPQGYPPPG+YP QGYPPPYA
Sbjct: 1  MSYYNQGQPPIGVPPPQGYPPEGYPKDAYPPQGYPPAGYPPQGYPPPGAYPQQGYPPPYA 60

Query: 61 PQYAQPPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
          PQY QPPP QQQ+SGPGC+EGCLAALCCCCLLDACF
Sbjct: 61 PQYGQPPP-QQQSSGPGCLEGCLAALCCCCLLDACF 95

[Close]

BLAST of Carg08116 vs. TAIR 10
Match: AT2G41420.1 (proline-rich family protein )

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-31
Identity = 72/100 (72.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1  MSYYNQGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPG--------------SYPPQGYP 60
          MS YN  QPPVGVPPPQGYPPEGYPKDAYPPQGYPP G               YP QGYP
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PPYAPQYAQPPPQQQQNSGPGCMEGCLAALCCCCLLDACF 87
          PPYAPQY  PP  QQQ S PG +EGCLAALCCCCLLDACF
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCCLLDACF 98

[Close]

BLAST of Carg08116 vs. TAIR 10
Match: AT5G67600.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49845.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-21
Identity = 60/87 (68.97%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 4  YNQGQPPVGVPPPQGYPP-EGYPKDAYPPQGYPPPG---SYPPQGYPPPYAPQYAQPPPQ 63
          Y+Q Q PVG PPPQGYPP +GYP   YPP GYPPPG    YP QGYPP   PQY+Q  PQ
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP---PQYSQ-APQ 61

Query: 64 QQQNSGPGCMEGCLAALCCCCLLDACF 87
          Q+QN+  G +EGCLAALCCCCLLDACF
Sbjct: 62 QKQNA--GMLEGCLAALCCCCLLDACF 82

[Close]

BLAST of Carg08116 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-15
Identity = 51/103 (49.51%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 6   QGQPPVGVPPPQGYPPEGYPKDAYPPQGYPPP-----GSYPPQGYPPPYAPQ-------- 65
           +G PP G PPP GYPP  YP+  YPP GYPPP       YP QGYPPP  PQ        
Sbjct: 22  EGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQGYPAQGYPPPQYPQGHPPQYPY 81

Query: 66  -------YAQPPPQQQQN--SGPGCMEGCLAALCCCCLLDACF 87
                  Y Q PP+ +++     G MEGCLA LCCC LL+ACF
Sbjct: 82  QGPPPPHYGQAPPKNKKDKKDSGGFMEGCLAMLCCCVLLEACF 124

[Close]

BLAST of Carg08116 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 36/71 (50.70%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 15 PPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPPPYAPQYAQPPPQQQQNSGPGCMEGCLA 74
          P   YP   YP     PQG PPP   PPQ YPPP  P    PPP++      G +EG LA
Sbjct: 4  PKYAYP---YPAPGNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRK-----VGFLEGLLA 63

Query: 75 ALCCCCLLDAC 86
          ALCCCCL+D C
Sbjct: 64 ALCCCCLVDEC 66

[Close]

BLAST of Carg08116 vs. TAIR 10
Match: AT5G45350.1 (proline-rich family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 32/62 (51.61%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 7  GQPPVGVPPPQGYPPEGYPKDAYPPQGYPPPGSYPPQGYPP----------PYAPQYAQP 59
          G PP G PPP  YPP GYP+  YP    PPPG+YPP GYPP          P AP Y   
Sbjct: 15 GYPPAGYPPPGAYPPAGYPQQGYP----PPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGY 72

The following BLAST results are available for this feature:

BLAST of Carg08116 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942954.1	5.6e-42	100.00	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita m...	[more]
XP_011652909.1	3.7e-38	89.01	cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus]...	[more]
XP_008454408.1	9.2e-37	89.01	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
XP_038905303.1	1.6e-36	86.81	cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa h...	[more]
XP_022149329.1	8.6e-35	82.29	cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica c...	[more]

BLAST of Carg08116 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8M0	3.0e-30	72.00	Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis th...	[more]
Q9FJW3	2.1e-20	68.97	Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis th...	[more]
Q8LCL8	7.1e-16	57.00	Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thali...	[more]
Q17094	3.6e-07	60.34	Rhodopsin (Fragment) OS=Alloteuthis subulata OX=54069 GN=RHO PE=3 SV=1	[more]
P24603	3.6e-07	57.81	Rhodopsin OS=Loligo forbesii OX=6618 GN=RHO PE=2 SV=1	[more]

BLAST of Carg08116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JI08	2.7e-42	100.00	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]
A0A6J1FSU9	2.7e-42	100.00	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]
A0A0A0KWC5	1.8e-38	89.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000680 PE=4 SV=1	[more]
A0A1S3BZB4	4.5e-37	89.01	cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo...	[more]
A0A6J1D5E9	4.2e-35	82.29	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica...	[more]

BLAST of Carg08116 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41420.1	2.1e-31	72.00	proline-rich family protein	[more]
AT5G67600.1	1.5e-21	68.97	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;...	[more]
AT3G49845.1	1.2e-15	49.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G33660.1	2.4e-06	50.70	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G45350.1	2.4e-06	51.61	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 41..86 e-value: 1.7E-5 score: 25.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	PANTHER	PTHR31568:SF84	CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-LIKE	coord: 1..86
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08116-RA	Carg08116-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane