Carg08111 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08111
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Cyclin-dependent kinase
Location	Carg_Chr04: 2331763 .. 2331966 (+)
RNA-Seq Expression	Carg08111
Synteny	Carg08111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATGGACAAGAGCGCGAGCGTCAAGATTGAAATCCGTAGCCAAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGCGATCGTAAAGTTTCTTAG

mRNA sequence

ATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATGGACAAGAGCGCGAGCGTCAAGATTGAAATCCGTAGCCAAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGCGATCGTAAAGTTTCTTAG

Coding sequence (CDS)

ATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATGGACAAGAGCGCGAGCGTCAAGATTGAAATCCGTAGCCAAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGCGATCGTAAAGTTTCTTAG

Protein sequence

MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADRPGDRKVS

Homology

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: KAG7030935.1 (hypothetical protein SDJN02_04972, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 4.1e-24
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PGDRKVS
Sbjct: 61 PGDRKVS 67

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: XP_022941983.1 (uncharacterized protein LOC111447190 [Cucurbita moschata] >XP_022941984.1 uncharacterized protein LOC111447190 [Cucurbita moschata])

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR
Sbjct: 5  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 64

Query: 61 PGDRKVS 68
          PGDR VS
Sbjct: 65 PGDRTVS 71

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: XP_023530681.1 (uncharacterized protein LOC111793132 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRS+KARLLIDKTLKVADR
Sbjct: 5  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSRKARLLIDKTLKVADR 64

Query: 61 PGDRKV 67
          PGDR V
Sbjct: 65 PGDRTV 70

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: XP_008454414.1 (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0044321.1 uncharacterized protein E6C27_scaffold46G00430 [Cucumis melo var. makuwa] >TYK29449.1 uncharacterized protein E5676_scaffold655G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPYIKMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: XP_022149139.1 (uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncharacterized protein LOC111017632 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPY+KMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. ExPASy TrEMBL
Match: A0A6J1FTL0 (uncharacterized protein LOC111447190 OS=Cucurbita moschata OX=3662 GN=LOC111447190 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.8e-24
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR
Sbjct: 5  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 64

Query: 61 PGDRKVS 68
          PGDR VS
Sbjct: 65 PGDRTVS 71

[Close]

BLAST of Carg08111 vs. ExPASy TrEMBL
Match: A0A5D3E160 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00420 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPYIKMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. ExPASy TrEMBL
Match: E5GBH1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPYIKMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. ExPASy TrEMBL
Match: A0A1S3BZS5 (uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPYIKMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. ExPASy TrEMBL
Match: A0A6J1D650 (uncharacterized protein LOC111017632 OS=Momordica charantia OX=3673 GN=LOC111017632 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.5e-19
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPY+KMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. TAIR 10
Match: AT3G19660.1 (unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-13
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          M  QL +L+E+IKSKV  LRK KK+   YIKMDKS+SV++ IR +K R LIDKTLKVADR
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKT---YIKMDKSSSVRVAIRRKKTRDLIDKTLKVADR 60

Query: 61 PGDR 65
          PG R
Sbjct: 61 PGKR 61

The following BLAST results are available for this feature:

BLAST of Carg08111 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030935.1	4.1e-24	100.00	hypothetical protein SDJN02_04972, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022941983.1	2.0e-23	98.51	uncharacterized protein LOC111447190 [Cucurbita moschata] >XP_022941984.1 unchar...	[more]
XP_023530681.1	2.2e-22	96.97	uncharacterized protein LOC111793132 [Cucurbita pepo subsp. pepo]	[more]
XP_008454414.1	1.5e-18	86.57	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypot...	[more]
XP_022149139.1	2.0e-18	85.07	uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncha...	[more]

BLAST of Carg08111 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTL0	9.8e-24	98.51	uncharacterized protein LOC111447190 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A5D3E160	7.3e-19	86.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GBH1	7.3e-19	86.57	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BZS5	7.3e-19	86.57	uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=...	[more]
A0A6J1D650	9.5e-19	85.07	uncharacterized protein LOC111017632 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Carg08111 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19660.1	5.9e-13	65.63	unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563	BNACNNG33880D PROTEIN	coord: 1..64
None	No IPR available	PANTHER	PTHR34563:SF6	BNACNNG33880D PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08111-RA	Carg08111-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004180	carboxypeptidase activity
molecular_function	GO:0016301	kinase activity