Carg08087 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08087
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 2190054 .. 2193613 (-)
RNA-Seq ExpressionCarg08087
SyntenyCarg08087
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTGGAGTACCTGTGACATTCTTGCAAGTAATGCAGTTGTTGCTTCAAAGCTGCTGCCTCTCTTTTCCAAAACTAGCAATTATAGAACAGATGATCAGCGTTGCAGTTTTACTTGTAGCATGGTAAGTTACAAGTTTGATGATTTTAACTAATCTATTTGAAAGGCATGAATTTTACTTCTCTTTTGAGTGAAAAGAGATATATTGCCACTAAGGGATAAAAAAGCTGTTAAGGATAATATTAGATACTGCTGCAATTACCAATTTTGGGGTAAATGCATTTATTTTCTTTGTCATTCCTCTTCTAGACTATAGTCTATATCCTTGATTTTAAATAATTTTCTTGGTGGTACCTAAAACCTTTATGCAGATAATACATTGTCTGAAGTTTATTTTAGATTTCTTGGTGCCTCCAAGCTTGAAAAAGTTACAACATAGGGGTTCTACAATGTTTAATACATTATTCCTTTTTTATGAGTGAAAGTATGAGGCAAGGTAAAACCTCTAATGTTTCTGGAGATAGGCCTTGGAATGGGTGTTGGGTTGGTTGAACTATTCTTTCTTTCTCTTCTCCCCTTTCTTTCTAGGTTCCTTTTTTTAAAAAAAAAAAAAAAAAAAAGAGGCAAAACCAGCCCACCCAAAACACGAGGATCACAAAACAGACTGACAGACTTGGAATGTATTAGGAGTCCAAATGGCTGACGATCGAGAAAAAACAGTCAGGGAAATAAAACCTATATGTTAGCCCTCTCTCGCATGAGCTATGACCAATTAATAGGGAGAAAACAATGTTGCAAGAGTTTGAGTACTTCTTAATCCGTTAAATTGATGAATATTGGACCATGTTAATATCAATAGACTTTAAAAGAGAATTGGTTCGAGTCAGGGTGGTCATCTATTTAAGATTTAATATCCTATGAATTACATTGATAACCAAATATTGTTTAGGGTTGAGAATAGTTGAGTTGTAAAGCTTGACTCAAATGTTAGTAATCACGACTCTCCACAATGGTATGATATTGCTGACTTTGAGCATAAGCTCTCATGACTTTGCTTTGGGCTTCCCCAAAAGGCCTCGTACAAATGGAGATGTATTCCTTTACTTATAAACCCATGATCATTCTCTAAATTAGCCAAGGTGGGACTCACTCCCAACAATCCTCCCCTCAAACAAAGTACACTATAAGCCTCCTCTGAGGCTTATGAAGCTCTCGAATAGCCTCCCCTTAATCGAGGCTCGACTCATTTCTTTGGAGCCCTCGAACAAAGTACACCTTTTGTTTGACACTTTAGTCACTTTTTTACTACACCTTCGAGACTCACAATCTTTGTTCAATATTTGAGGATTCTATTGTCATGGCTAAGTTTAGGGCATGGCTCTGATACCATGTTAATAATTACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGAGCTTCCCCAAAAGGCCTCATACAAATGGAGATGTATTCCTTTACTTATAAACTCATAATCATTTCCTAAATTAGCCAATGTGGGACTCACTCCCAACATCAAACACTCGCGAACAATAAAAAAGAAGCGGTAACTTCAGCTAACTCAAGTTCTTCCACAGTTTAGGGAAGAACGAAGGGGACTATAGAGAAGGAGAATAAGTTAGATGATTGTACAAAGGATTGTCGGTAAGGACATTTTGGTGGCCACAGGAGGTCCAAAACTAAAATTGACCCTTTGAATAATGAAAATCAAGGAAACCATTTAGTCGATCTCTATTACATGAATACAGATGAGGGAACCTTGACTTGAGGGGATAGTATTCTGAAACTGAGGGCTGTTATTGACCTTCACTAAAGAACATGCCGTCTAACTCCTATTCTTTAATAATCAGTACCTCAAACCTTCGTTATTTCTTCTCCATGTTTAACTCGGTTTTTAGCTATTGTTGTGGCTTACATAAGAATTCTTGCCTTAATCTTCTCTTCTTAGTGCTGTCTCCAATCGATTTTGATCTGCGCCACATTTCTTCATTGGTTTCATCTCATTTCCCACAACTCCTCCGCTCAAGTGTGCATCTCATTTTCAACACCCATTGTACTTCGAACTAAGGAATTCCTCTGAACTTTGGAGAACTTTTACATAGCTTTATTTTGATTCTCTATCTTATTTGCTTTCATTCCTCAACGAACTCACTCCTCTGACACAGCTTTGATAACGTTTTGATGGGATCAAAAGTAGTAGTTTCATTTGTAAGCAAAAGTGAAGTACAATTTAGGAGAATTCTAGGGATCCACTTAACTCCCATAAAACCTTCTAGGCTCTTCCTCCTTTCTCTACTGCCCACAACTACTTAAAACACTTCTTACGTAGTTACGTGGATCCTTCCTTCAACCAATCGTTCGTACTACGACCCCCGCTTGACCTCTCCATGCTTTCTTACTTCCCCTTTCTATTATCTTCTTATGTAAAGTGTTAAGGAAGCCTATTGTGAATTCATATGGATGCATGTCTTATAAACCTCTTGAAGATCACAACACTAGAAATTCCTCTTATTCTGTATCAGGGATCAAGAATCTATCACAAAAGTTATTTTCTTAATGTCTTTGACCTTGTCTTGCTTCATCCCTATCCTTGTTAATTGAATTTCACCTTTGAAAGAATCATCTTTGAGAAACACTCTTGTGGGAATGTTATATTCACAGTACAGAAAAAATGCGGATGTTTAGTTTAATGAGTTTAAATTAACGAAAAAACTGGAATTGCAGATGAATGGAGATTTTACCTGGAGTTCTGAAACAGAGTTCATCAGCTGATTTTGCTCCTCCTTCACCTTGTAGTAACGATCGGTAATTGATCTTATGCTGATAAGATAGAAACTGTTAATTCAGTTCATAACCACACCTGAAATCAAATCTTGAGTTTTTAATTGCCATGTCACCATCATAAGGATTTATTACGTGAGTTGTGAATATAATCTGCTCATAGCATGCTGTAGAGTGATCGGTTTGTTCGCTATCTCGTATAAGCAAGTCGAGTTTGGGTGCTTGTCAGTTATTGAAACTCACCCAAACTCCTATTTCACATAATATTTTAAATTAGAAAATCTCAATGCCTTCCTTTCAGAAGCCATGGAACTTTGTACAAAGACGTTACGAAGATGGATCGGTACAATTTTCCTAACTTAGCTGCAATTTATGCTGTATTTTTTCTGGTAAGGGTTGTGATCTGTGTTGCTAGAAGGCTATGATAGCTTGATTCTGATTATCGTGTTCTTTTAATATGACATAGCAACAATGCCTAATAAATGATTTTTGTAACATGTGTTTAAATCATAGTGGTTAAGACAGGTGGTCGTGTAAGAATAGTTTAGGTACGTGTAAACCAGTTCAGACACTCTCTCGTCGCATTGTTTTTACGTGTGTGTTAGCATTTTTCACATGAAGCTAATCATGAGATTTTAGAGCTCAACTTTCTTCCCTATTCCTATTCTTAAAATCAAGATGATTTTGATTCTTCATCCTTCCTCTATTTTTTAATCTTGAAAATAGTTTTTTT

mRNA sequence

GGTTGGAGTACCTGTGACATTCTTGCAAGTAATGCAGTTGTTGCTTCAAAGCTGCTGCCTCTCTTTTCCAAAACTAGCAATTATAGAACAGATGATCAGCGTTGCAGTTTTACTTGTAGCATGATGAATGGAGATTTTACCTGGAGTTCTGAAACAGAGTTCATCAGCTGATTTTGCTCCTCCTTCACCTTGTAGTAACGATCGAAGCCATGGAACTTTGTACAAAGACGTTACGAAGATGGATCGGTACAATTTTCCTAACTTAGCTGCAATTTATGCTGTATTTTTTCTGGTAAGGGTTGTGATCTGTGTTGCTAGAAGGCTATGATAGCTTGATTCTGATTATCGTGTTCTTTTAATATGACATAGCAACAATGCCTAATAAATGATTTTTGTAACATGTGTTTAAATCATAGTGGTTAAGACAGGTGGTCGTGTAAGAATAGTTTAGGTACGTGTAAACCAGTTCAGACACTCTCTCGTCGCATTGTTTTTACGTGTGTGTTAGCATTTTTCACATGAAGCTAATCATGAGATTTTAGAGCTCAACTTTCTTCCCTATTCCTATTCTTAAAATCAAGATGATTTTGATTCTTCATCCTTCCTCTATTTTTTAATCTTGAAAATAGTTTTTTT

Coding sequence (CDS)

ATGGAGATTTTACCTGGAGTTCTGAAACAGAGTTCATCAGCTGATTTTGCTCCTCCTTCACCTTGTAGTAACGATCGAAGCCATGGAACTTTGTACAAAGACGTTACGAAGATGGATCGGTACAATTTTCCTAACTTAGCTGCAATTTATGCTGTATTTTTTCTGGTAAGGGTTGTGATCTGTGTTGCTAGAAGGCTATGA

Protein sequence

MEILPGVLKQSSSADFAPPSPCSNDRSHGTLYKDVTKMDRYNFPNLAAIYAVFFLVRVVICVARRL
Homology
[Close]
BLAST of Carg08087 vs. NCBI nr
Match: KAG7030911.1 (hypothetical protein SDJN02_04948 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MEILPGVLKQSSSADFAPPSPCSNDRSHGTLYKDVTKMDRYNFPNLAAIYAVFFLVRVVI 60
          MEILPGVLKQSSSADFAPPSPCSNDRSHGTLYKDVTKMDRYNFPNLAAIYAVFFLVRVVI
Sbjct: 1  MEILPGVLKQSSSADFAPPSPCSNDRSHGTLYKDVTKMDRYNFPNLAAIYAVFFLVRVVI 60

Query: 61 CVARRL 67
          CVARRL
Sbjct: 61 CVARRL 66

The following BLAST results are available for this feature:
BLAST of Carg08087 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030911.13.5e-28100.00hypothetical protein SDJN02_04948 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg08087 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08087 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08087 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08087-RACarg08087-RAmRNA