Carg08072 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08072
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Conserved peptide upstream open reading frame 37
Location	Carg_Chr04: 2113852 .. 2115594 (+)
RNA-Seq Expression	Carg08072
Synteny	Carg08072

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGATCGTTTGGACACTTTTAAAGGAATTTCTTCTCTGTTTTTGGAGTCGTTTAGATCTGACTCAAATTCTCAATCTGCTTCGCTCTGGATTCTCTTCCGATTTTGCTGTAAGATTCTTTCACATTTTCTTGCAATTCTTGCTTGTTTCTCTCCCGTATTTTCCCTTCTTGCTGTCTGATTCTGAATGCCTGGCAAGGGTTTCTGAGAATCTGAAAGAATGAATGGACGTAGAAATTGGTTGTTTCAGAGGCGTGGAAAATCGAAAACGCCGAATGATTTTGTCGGTTCCGTTGCTCGTTAGAGGGAAATTTTGATTTGATTGTCTTGGGAACTTAGCTGAAGCGAATATAAAATTTTTTGTTCTAAAATGTGTCTATTTTCATTCGTTTTCTCAGCGATCAAATGGTGGCTTATTTCCCGAGAATATTCTCTGAAATTTCTCTTTGAAAGTCAAGATATTGTTCTTCGGAATCAAGCTCTTTTTATGATGTTCCTCTTGTTTCGTCTTCTTAAAATACTTGTTGGGTTATAAATATATGTTTTTGTAGGCGTTGATTTATCTCTATTTCCATTCAAGTATTTCTCCTTTTCTAATGCCCCTCTTGTTTCATTTTCTTTAAGTACTTTTTGGATTCTAAATACATGTTATGTAGGCGTTGAGTTTTCTTTCTTTTGTAGCTTAGAAAGAAATTCAAATTTCCATCCAAATTGTTGGTTTTCCTGTTCCTTTCGTCAGATGAAATACTACTTTTCTTCAGTGTACTGTGTACTGACTTTTGTGTCAAATATTTGAATGAATGCAGATTGTTTTAGTACTATGCTTTATGTATTCGATACATCTCATCAGTTTGTAAATTTACGTTTCTTTACTTTTATATGATGTAAATATCTATGTATTTATTATTGTTTTTCATGTTTTTGCAGGGGTTCTATTATATAAGTTGTGGATCATCGATTGTAGTTGTGGATGTGTTACCTTTACACATTGGGAGAATAATATGCTTTGGTTGAGCACATCCACTGATGTATTTCGCAAAGTTGTGCATTTGAACCTCTATTGTAGGGTTATTTTGTAAAGCACTTTTTGTATCGGTAACACTGAATTATTCCTCCCTGAGCTCGTTCTTTCAATCAACCATGGGTTCCAATCACTTTTTTATCATTTCCTGTGATATCTACATTAGCTGAAAAGTTTCCCGTCTCTAAGCACCATTTTGCGTTCATTCTTCTGTTTTTAAATTCCCTTTTTTCTGCTTCTTTGTCAAGGAATCTAGCTAGCTCATTAAGTTTCCTCGTTCATCTTTATCAACTAGTGAGTTTAGTTGTTTCTGCAGTGAATATTCTCCTTTTACCTTCCTCTTTCTTTGTTTGTTGGTACCCTCTTGTGGCTTCTGGTATAGAGGAATTGTTATCCGTTAAGGTTCAGAAGTAGTTATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACACTGAAACACGAGAACGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGTTTGTCAACTCAGTTTCTGCCCCCTGGTTTTGCTTGTTGATTAATAATTAACTATTGGAATATTTTTACGTTTATTTTATTTGAAAATGCATTAGTAGGCTCATTGAATACCATGATCAAGCTTTTGATATTTTCCTGTTCCAGGCCGAGTATTTTCGACACTTACTTAAGCCGGTCACGTAG

mRNA sequence

GATGATCGTTTGGACACTTTTAAAGGAATTTCTTCTCTGTTTTTGGAGTCGTTTAGATCTGACTCAAATTCTCAATCTGCTTCGCTCTGGATTCTCTTCCGATTTTGCTGGGTTCTATTATATAAGTTGTGGATCATCGATTGTAGTTGTGGATGTGTTACCTTTACACATTGGGAGAATAATATGCTTTGGTTGAGCACATCCACTGATGTATTTCGCAAAGTTGTGCATTTGAACCTCTATTGTTCAGAAGTAGTTATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACACTGAAACACGAGAACGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGCCGAGTATTTTCGACACTTACTTAAGCCGGTCACGTAG

Coding sequence (CDS)

GATGATCGTTTGGACACTTTTAAAGGAATTTCTTCTCTGTTTTTGGAGTCGTTTAGATCTGACTCAAATTCTCAATCTGCTTCGCTCTGGATTCTCTTCCGATTTTGCTGGGTTCTATTATATAAGTTGTGGATCATCGATTGTAGTTGTGGATGTGTTACCTTTACACATTGGGAGAATAATATGCTTTGGTTGAGCACATCCACTGATGTATTTCGCAAAGTTGTGCATTTGAACCTCTATTGTTCAGAAGTAGTTATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACACTGAAACACGAGAACGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGCCGAGTATTTTCGACACTTACTTAAGCCGGTCACGTAG

Protein sequence

DDRLDTFKGISSLFLESFRSDSNSQSASLWILFRFCWVLLYKLWIIDCSCGCVTFTHWENNMLWLSTSTDVFRKVVHLNLYCSEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT

Homology

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: KAG7030896.1 (hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 4.3e-76
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   DDRLDTFKGISSLFLESFRSDSNSQSASLWILFRFCWVLLYKLWIIDCSCGCVTFTHWEN 60
           DDRLDTFKGISSLFLESFRSDSNSQSASLWILFRFCWVLLYKLWIIDCSCGCVTFTHWEN
Sbjct: 1   DDRLDTFKGISSLFLESFRSDSNSQSASLWILFRFCWVLLYKLWIIDCSCGCVTFTHWEN 60

Query: 61  NMLWLSTSTDVFRKVVHLNLYCSEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACF 120
           NMLWLSTSTDVFRKVVHLNLYCSEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACF
Sbjct: 61  NMLWLSTSTDVFRKVVHLNLYCSEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACF 120

Query: 121 QPLQNCQAEYFRHLLKPVT 140
           QPLQNCQAEYFRHLLKPVT
Sbjct: 121 QPLQNCQAEYFRHLLKPVT 139

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: KAG6600237.1 (hypothetical protein SDJN03_05470, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 10  ISSLFLESFRSDSNSQSASLWILFRFCWVLLYKLWIIDCSCGCVTFTHWENNMLWLSTST 69
           ISSLFLESFRSDSNSQSASLWIL RFCWVLLYKLWIIDCSCGCVTFTHWENNMLWLSTST
Sbjct: 369 ISSLFLESFRSDSNSQSASLWILCRFCWVLLYKLWIIDCSCGCVTFTHWENNMLWLSTST 428

Query: 70  DVFRKVVHLNLYCSEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAE 129
           DVFRKVVHLNLYCSEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAE
Sbjct: 429 DVFRKVVHLNLYCSEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAE 488

Query: 130 YFRHLLKP 138
           YFRHLLKP
Sbjct: 489 YFRHLLKP 496

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: KAG5052602.1 (hypothetical protein JHK87_004800 [Glycine soja])

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-26
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 64  WLSTSTDVFRKVVHLNLYC-----SEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIA 123
           WLS S DV+RKV+ LNLYC      +VVMVCQAA+QTRFR LKHENG AG  TIIVRVIA
Sbjct: 4   WLSLSVDVYRKVISLNLYCKVILVGKVVMVCQAASQTRFRALKHENGYAGSSTIIVRVIA 63

Query: 124 CFQPLQNCQAEYFRHLLKPVT 140
           CFQPL +CQAEYFRHLLKPVT
Sbjct: 64  CFQPLTDCQAEYFRHLLKPVT 84

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: KAG4954830.1 (hypothetical protein JHK87_040424 [Glycine soja])

HSP 1 Score: 128.3 bits (321), Expect = 5.3e-26
Identity = 61/81 (75.31%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 64  WLSTSTDVFRKVVHLNLYC-----SEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIA 123
           WL+ S DV+RKV+ LNLYC     ++VVMVCQAA+QTRFR LKHENG AG  TIIVRVIA
Sbjct: 4   WLTLSVDVYRKVISLNLYCKVILVAKVVMVCQAASQTRFRALKHENGTAGSSTIIVRVIA 63

Query: 124 CFQPLQNCQAEYFRHLLKPVT 140
           CFQPL +CQAEYFRHLLKPVT
Sbjct: 64  CFQPLTDCQAEYFRHLLKPVT 84

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: KAF7817008.1 (transcription factor BHLH021 [Senna tora])

HSP 1 Score: 127.5 bits (319), Expect = 9.1e-26
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 64  WLSTSTDVFRKVVHLNLYCS--EVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQ 123
           WLS + +VFRKV+ LNLYC   +VVMVCQAA+QTRFR LKHENGIAG  TIIVRVIACFQ
Sbjct: 4   WLSLAVNVFRKVISLNLYCKGWKVVMVCQAASQTRFRALKHENGIAGSSTIIVRVIACFQ 63

Query: 124 PLQNCQAEYFRHLLKPVT 140
           PL+ CQAEYFR LLKPVT
Sbjct: 64  PLRECQAEYFRQLLKPVT 81

[Close]

BLAST of Carg08072 vs. ExPASy TrEMBL
Match: A0A3Q7JDA5 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.8e-25
Identity = 63/87 (72.41%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 60  NNMLWLSTSTDVFRKVVHLNLYC-------SEVVMVCQAATQTRFRTLKHENGIAGKPTI 119
           N+ML    S DV+RKV+ LNLYC        +VVMVCQAA QTRFR LKHENGIAG  TI
Sbjct: 31  NSMLCCCLSVDVYRKVISLNLYCHIVVEGLEQVVMVCQAAGQTRFRALKHENGIAGCATI 90

Query: 120 IVRVIACFQPLQNCQAEYFRHLLKPVT 140
           IVRVIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 91  IVRVIACFQPLQDCQAEYFRQLLKPVT 117

[Close]

BLAST of Carg08072 vs. ExPASy TrEMBL
Match: M0RRS1 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.4e-24
Identity = 64/108 (59.26%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 62  MLWLSTSTDVFRKVVHLNLYC------------------------------SEVVMVCQA 121
           M WLS S DV+RKV+ LNLYC                                VVMVCQA
Sbjct: 1   MRWLSLSVDVYRKVISLNLYCRVILIIWLLFLFSFGCILLGSRWTGLVSEERTVVMVCQA 60

Query: 122 ATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           AT+TRFR LKHENGIAG  TIIVRVIACF+PLQ+CQAEYFRHLLKPVT
Sbjct: 61  ATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

[Close]

BLAST of Carg08072 vs. ExPASy TrEMBL
Match: A0A444EZ51 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00020550 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.4e-24
Identity = 64/108 (59.26%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 62  MLWLSTSTDVFRKVVHLNLYC------------------------------SEVVMVCQA 121
           M WLS S DV+RKV+ LNLYC                                VVMVCQA
Sbjct: 1   MRWLSLSVDVYRKVISLNLYCRVILIIWLLFLFSFGCIPLGSRWTGLVSEERTVVMVCQA 60

Query: 122 ATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           AT+TRFR LKHENGIAG  TIIVRVIACF+PLQ+CQAEYFRHLLKPVT
Sbjct: 61  ATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

[Close]

BLAST of Carg08072 vs. ExPASy TrEMBL
Match: A0A427B3H1 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00011968 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 63/108 (58.33%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 62  MLWLSTSTDVFRKVVHLNLYC------------------------------SEVVMVCQA 121
           M WLS S DV+RKV+ L LYC                                VVMVCQA
Sbjct: 1   MRWLSLSVDVYRKVISLTLYCRVILIIWLLFLFSFGCIPLGSRWTDLVSEERTVVMVCQA 60

Query: 122 ATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           AT+TRFR LKHENGIAG  TIIVRVIACF+PLQ+CQAEYFRHLLKPVT
Sbjct: 61  ATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

[Close]

BLAST of Carg08072 vs. ExPASy TrEMBL
Match: A0A0A0K458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.3e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQAA+QTRFR LKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Carg08072 vs. TAIR 10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37 )

HSP 1 Score: 90.9 bits (224), Expect = 8.8e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQ+A QTRFRTLKHE+GI G   I+VRVIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1   MVCQSAGQTRFRTLKHEHGITG--NIVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of Carg08072 vs. TAIR 10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43 )

HSP 1 Score: 88.2 bits (217), Expect = 5.7e-18
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHE-NGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MV Q+A QTRFRT K+E NG + +PTI+VRVIACFQP+ NCQAEYFRH+LKPVT
Sbjct: 1   MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of Carg08072 vs. TAIR 10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40 )

HSP 1 Score: 80.9 bits (198), Expect = 9.1e-16
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQ+  +TRFR LK+E G A + TI+VRVI C+QP+ NCQAEYFR LLKPVT
Sbjct: 1   MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

The following BLAST results are available for this feature:

BLAST of Carg08072 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030896.1	4.3e-76	100.00	hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600237.1	1.5e-68	99.22	hypothetical protein SDJN03_05470, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG5052602.1	3.1e-26	76.54	hypothetical protein JHK87_004800 [Glycine soja]	[more]
KAG4954830.1	5.3e-26	75.31	hypothetical protein JHK87_040424 [Glycine soja]	[more]
KAF7817008.1	9.1e-26	78.21	transcription factor BHLH021 [Senna tora]	[more]

BLAST of Carg08072 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08072 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3Q7JDA5	2.8e-25	72.41	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
M0RRS1	2.4e-24	59.26	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
A0A444EZ51	2.4e-24	59.26	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00020550 PE=4 SV=1	[more]
A0A427B3H1	1.2e-23	58.33	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00011968 PE=4 SV=1	[more]
A0A0A0K458	4.3e-21	94.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1	[more]

BLAST of Carg08072 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50011.1	8.8e-19	81.13	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	5.7e-18	74.07	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	9.1e-16	67.92	conserved peptide upstream open reading frame 40	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281:SF2	BNAA02G34170D PROTEIN	coord: 87..139
None	No IPR available	PANTHER	PTHR35281	BNAA02G34170D PROTEIN	coord: 87..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08072-RA	Carg08072-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane