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Carg08049 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATGAAATCCAGAGTTACAGACAGGATCCGAAACCTAATCTTCAGCCATTCATAAGTAGACAATATACACAGGGATCGAGTGGCCACCGGAGGCGGAGATGGAGCATAATTTCAACTACGACGAGCACGAGCATGAACACGAAGTCTATGGCGGCGATATTCCCGACGATGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACTCCAACTCGAAGGTAGCTTCTCGAGTTCTTCTCTGTTTTTTCCGAGCCTTTTTCATGGAGTTTCGTCTCTGATTCACTGTATTTTCTAACTGTTCAGGACTTGGAGGACATGAAGAGGAGGCTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGGTATCTTCCTTTTTTATCTCTGTACTTCAGTAAGTTAGTTCTTGATTTCTTTTATTGATCTTGGCTTGGTTTAAGGCTTAATTTTTACCGATTTTTAATGGCGGTGGGAGGATTTAAGTTGCCTGGATGAGCCTAGTCTTAACATTGATCACATGTTTGCACATTGAAGAGAGTGAATTTAAGTTGCAAACTGTGAATCAAGTTCATGAAGTTCCAAGATCTGTTAGGGCTAAACCTTATTGAAGTCATTTAGTGGGTAAGTAGGAGAGTTTTGTGACAACACAAGGTTGTCGGATCGTATAAATAGAAGGCTTCTTAAATAGGTTGAGAGCCCTTGTGGGAAGTATGGTCTAGATGAGGTTAAATGCCTAACTTACCAAAGAGTTTTATACTAAACTAACCGAAGAGTTTTATAAACGTCGTCACTTTTTATAAACAGTCGAAGTCCCGTTAGTTTTCGACAAACATCTTCAAAGTTCGGTTTCTCGGGAAGAGAAAAGAAAAGATCGTTAGATCTAGGAAATTTTGAAGTTCTTGAAGTGTTATTTAGCATTGTTATGTCCAATGGGTGCATAGCATTCTTCGATTTTTCTTTGTAGTCTCGAGTTTTTTTGTCGTTTATTTTATAAATCAACCAGCAAGTTTTCAAGACTTTCTGTATTTTGATGGTATTTGACAAATTTCTTATAACGTTCGTCTTTCATCCGGGTGGAACTAAAGTTAAGTTGTCTCTCTTTTCTTATTTATGCTATTTGAGTCTGGAACTTCTTTTTTTCACAATTATGTTGCTTTAATTGTCATATTTGGGCAATAATTTTCACTTTATTAACAAAACAAATTGATTGTTTTAATGTCCTCTTATTTCCTATGCTGTCAAAACGATACGAACTTTTAGCAAGATGAATGTGTTCTATGTGGCATGTGCATGTCTGCTCATTAGATACTCTATAGGATTGTTCTCAGATTATTACTACTTTTCTTGTTATCATTTATCTTCTTTTTGGTGGTTGGAAGTATATTAATCAGTGGAAGTTTTATCTCATACTTTGGTTAACAATCTTTTTAGGGTTTTTCATTTGTTTGTAACTAACTCGTGTTCCTTTTAACATGTAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTGAGATTTATCACCCTTTTCATTCACTATGTCATTTTAACATTGAAGTTTTTTCCGTACACATTTATAGTATTACATCTTTAGCATTGGTCACCTTTTCGTTTCTCTTTAGTCATCTAACAACCATGGATTGGTCTTTACTGTTTATATTCGAATTATCTCAAGTACCGGAATAAAAATATTGAAAAACTTTTTTTTTTTTTTAAATCTTTTACTTTGAGTGACATTCTTTCATTAAAGAGTAATTTCAGACAAGAAATGTAAAAGATAAAACAATTATCATTAGGGAATACTGCGCCACGAATTATATTATTTTAAACTTGAAAAAATTAACTCGTATTTTTTTCAGTTTTTCTTTGTGGAAAATTGTTAAGCTGTTGCCACAACTAATAAAACAGAAAGTGCACGTCGAGAAGACCCATGGAACTTAGCTAAATCTAGTACCTGTTCCCGGCCATGCTCTTCCCATTGAAAAGGATTTCTTTATAGCTGTAGCCCCCAATCATGTCTTTGCTGTGTGGATCCATAAGGTTTTAGCGTTTTCGTAAAGTCGATGCCCATGTGAACAACTAGTTTATATTATATTCGGGCTAGCTGCGTCAGCAAGTTCTTCATAGAGTTGGAATGAAGGAAAGATCAAATTCCGCAAATGTTTGGTATCAGAGTGTGAGAATAAATGGTCTCGGTCCTGCTCTGCTTTCATACAGAGCAAACAACAGCTAGGATTTTATTAGGACATCTCTTTTGCAATCTATTCCCTCTGTTGACGCTCTCTCGGGAAAGGGACCTAAGAATTGCTATTGCTCCTTCCTTGACTGCCTTGCTTTTATCTAGTAATGAAGTTCCAAAAAACTTATTAATTTCTAACTTATCCTGGTTTCTTCTTGTTACTACCCTTCTTGAATTGGTGCTGCTGTCATTCCGAGCTTCTTGCACTTGCTAGTTCTTTTCCCTGTATAACCTCTTATAATCTCGAAAGCCTTAAACAATAATGTTGATTTTCCCCTCACGTATCCTGCCAAAAGGAGAGCCAATGCGCCCACCGAAGGCTACACACACTTCGAATCTTCCTTTCTTCTAAACCCCCATTCCTTCATTTTTCATATATGCTTGCCACGACCACCACCTTATCCCATAGGGCGCTAGACTCTTTCGGAAATCTCAATAACCTCTTATCCATAGTGCCCATATGCTGATGCTTAGCCCAACCTTTTAATGTTGCAATTATTGACCATAAAGACGTAAACCCAATCAGTATAGGGGAAAGAATTCATCGGCATGATCAATCTCAAGAAGTGATCAAAATTTTGGACCTTCGTAGAATGTTACCTTTCTGATTGTATGTTCAATTTATGTGAAGTTTATATTGAATATATGTCAAGTCATTATCATCTGTTACGAGGAATTATATTTTATCAATATTTCTAATATTTGGGTCTAAAGATATCTTTCCTTTAACTTGCTCCTAATCTTAAAAGTCTTGATGGATGGCGGATTGAAGTGTTATTTCTCCTTGGGCATACTTTTCTTTTTTGCCTCTCTCCCTATTTCACAAGGCTTTCCAATGTCATATTTCAATACAAGATTTATTTTTTTGTGTTGTGGTTTTTACTTCAGGTTGACTATGCATGCACTCCTGAAGAGGTGCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTCACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTATTTTAAACTTCAGTTTATGTAAGAACTTTATGTTAATAATCTATTTCACCCATACGCCCCTAATAGCGAATGTATATCGGAGCGGAGAACGACGTTGTCAATTTTTGAACTTCACCAGGCTTGTACGCTCATCTTAGATAAATTATAGAGTTTTACTACTGACCATAGTCGATTTTTGGTACATTTTGCAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGAGGTCGCCGCCCTTTCATGGCAGATGCCCCTTTTTATCCTTCGTATGGTTATGGGTAAGTGCTGAAATACTATATTTCTTTTCACAAGATGTGTGGATGGTTCATTTTCATTTTCAGACACAAACATTAAGTGTACTCCTTCAGAATTATCAACTTCCTATGTATATTGTTGAAAAAGGGAATAATCAACTTCCTTCTACTTTCAGCTTTATAATGCAAGTTTCTATCTTCCTACTTTATGCAGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAGGAGGGTGTATAATGCTCGTACTACTACCGCAAATGATTGTTCGGGTTCAGCAGTTCATTCGTCAAGGGCTCAATTTCCATCTCTATAACTTGGAGGGTGTGGATTGTACTCTATTCATGTTTTAAAATCCGACTCAAAGAGTTTCTTTTTATGAACTTGGTACCAGTTTTAGCTTGTGGGGTTTAAGATTTGTGGTTTGCTTCTTTATGTTGGCTCTGGAAGAGCTAAAAACCCATTAGAGAATTTTAAGGAAAGAAAATTAAGGAAACTGAAGGACACAGCCTTTTGTATGGTGAATTGGAACTGATCATGACGTAGAATTCTTTGTTATTTAAGAAGTAATTATAAGTTGATATGAAGACCTCCCCCCCTTTTTTGCCCTTTCCAATTTGATTATATTTGTATATGTTAGATCTCTCTTTAATTTTCAATTTTAAAGCTCTCTTCGATAATAGCTCGCCCTTGGCTTATTGAAGAAGAAGAGACGTGGTAAGAGAAGAGACGTGGTAAGAGATTATGTGAAGGACCCTAAAGTCCCAAGCTGATAAGCTCTTGGATAATCTCGGTCCTCTAACCGATTGGTCGTAGGTTCGAATCCTACAATAAGTATTTGTTGGACCTCCATTTCTCGAGAGGGAGCCAGGCTGTATTTCCCCAACGGCTGACTAGTGGTAGTAGAAAAACA TATGAAATCCAGAGTTACAGACAGGATCCGAAACCTAATCTTCAGCCATTCATAAGTAGACAATATACACAGGGATCGAGTGGCCACCGGAGGCGGAGATGGAGCATAATTTCAACTACGACGAGCACGAGCATGAACACGAAGTCTATGGCGGCGATATTCCCGACGATGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACTCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTGCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTCACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGAGGTCGCCGCCCTTTCATGGCAGATGCCCCTTTTTATCCTTCGTATGGTTATGGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAGGAGGGTGTATAATGCTCGTACTACTACCGCAAATGATTGTTCGGGTTCAGCAGTTCATTCGTCAAGGGCTCAATTTCCATCTCTATAACTTGGAGGGTGTGGATTGTACTCTATTCATGTTTTAAAATCCGACTCAAAGAGTTTCTTTTTATGAACTTGGTACCAGTTTTAGCTTGTGGGGTTTAAGATTTGTGGTTTGCTTCTTTATGTTGGCTCTGGAAGAGCTAAAAACCCATTAGAGAATTTTAAGGAAAGAAAATTAAGGAAACTGAAGGACACAGCCTTTTGTATGGTGAATTGGAACTGATCATGACGTAGAATTCTTTGTTATTTAAGAAGTAATTATAAGTTGATATGAAGACCTCCCCCCCTTTTTTGCCCTTTCCAATTTGATTATATTTGTATATGTTAGATCTCTCTTTAATTTTCAATTTTAAAGCTCTCTTCGATAATAGCTCGCCCTTGGCTTATTGAAGAAGAAGAGACGTGGTAAGAGAAGAGACGTGGTAAGAGATTATGTGAAGGACCCTAAAGTCCCAAGCTGATAAGCTCTTGGATAATCTCGGTCCTCTAACCGATTGGTCGTAGGTTCGAATCCTACAATAAGTATTTGTTGGACCTCCATTTCTCGAGAGGGAGCCAGGCTGTATTTCCCCAACGGCTGACTAGTGGTAGTAGAAAAACA ATGGAGCATAATTTCAACTACGACGAGCACGAGCATGAACACGAAGTCTATGGCGGCGATATTCCCGACGATGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACTCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTGCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTCACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGAGGTCGCCGCCCTTTCATGGCAGATGCCCCTTTTTATCCTTCGTATGGTTATGGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAG MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY Homology
BLAST of Carg08049 vs. NCBI nr
Match: KAG7030873.1 (Polyadenylate-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 461.1 bits (1185), Expect = 5.8e-126 Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
BLAST of Carg08049 vs. NCBI nr
Match: XP_023516160.1 (polyadenylate-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 459.9 bits (1182), Expect = 1.3e-125 Identity = 233/234 (99.57%), Postives = 234/234 (100.00%), Query Frame = 0
BLAST of Carg08049 vs. NCBI nr
Match: KAG6600212.1 (Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 455.3 bits (1170), Expect = 3.2e-124 Identity = 233/234 (99.57%), Postives = 233/234 (99.57%), Query Frame = 0
BLAST of Carg08049 vs. NCBI nr
Match: XP_022989860.1 (polyadenylate-binding protein 1-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 454.9 bits (1169), Expect = 4.2e-124 Identity = 233/236 (98.73%), Postives = 234/236 (99.15%), Query Frame = 0
BLAST of Carg08049 vs. NCBI nr
Match: XP_023516168.1 (polyadenylate-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 454.1 bits (1167), Expect = 7.1e-124 Identity = 232/234 (99.15%), Postives = 233/234 (99.57%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 2.7e-81 Identity = 165/228 (72.37%), Postives = 185/228 (81.14%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 6.8e-77 Identity = 159/225 (70.67%), Postives = 182/225 (80.89%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 5.9e-73 Identity = 159/228 (69.74%), Postives = 175/228 (76.75%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 9.0e-37 Identity = 91/174 (52.30%), Postives = 113/174 (64.94%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy Swiss-Prot
Match: Q8CCS6 (Polyadenylate-binding protein 2 OS=Mus musculus OX=10090 GN=Pabpn1 PE=1 SV=3) HSP 1 Score: 133.3 bits (334), Expect = 3.6e-30 Identity = 94/220 (42.73%), Postives = 126/220 (57.27%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy TrEMBL
Match: A0A6J1JNI9 (polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486896 PE=4 SV=1) HSP 1 Score: 454.9 bits (1169), Expect = 2.0e-124 Identity = 233/236 (98.73%), Postives = 234/236 (99.15%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy TrEMBL
Match: A0A6J1FT42 (polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447055 PE=4 SV=1) HSP 1 Score: 451.1 bits (1159), Expect = 2.9e-123 Identity = 231/234 (98.72%), Postives = 232/234 (99.15%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy TrEMBL
Match: A0A6J1JLK3 (polyadenylate-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486896 PE=4 SV=1) HSP 1 Score: 449.1 bits (1154), Expect = 1.1e-122 Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy TrEMBL
Match: A0A6J1FPG9 (polyadenylate-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447055 PE=4 SV=1) HSP 1 Score: 444.9 bits (1143), Expect = 2.1e-121 Identity = 230/234 (98.29%), Postives = 231/234 (98.72%), Query Frame = 0
BLAST of Carg08049 vs. ExPASy TrEMBL
Match: A0A1S3BYF0 (polyadenylate-binding protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494443 PE=4 SV=1) HSP 1 Score: 422.2 bits (1084), Expect = 1.5e-114 Identity = 221/234 (94.44%), Postives = 226/234 (96.58%), Query Frame = 0
BLAST of Carg08049 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 ) HSP 1 Score: 303.1 bits (775), Expect = 1.9e-82 Identity = 165/228 (72.37%), Postives = 185/228 (81.14%), Query Frame = 0
BLAST of Carg08049 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 288.5 bits (737), Expect = 4.8e-78 Identity = 159/225 (70.67%), Postives = 182/225 (80.89%), Query Frame = 0
BLAST of Carg08049 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 ) HSP 1 Score: 285.4 bits (729), Expect = 4.1e-77 Identity = 162/264 (61.36%), Postives = 186/264 (70.45%), Query Frame = 0
BLAST of Carg08049 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 275.4 bits (703), Expect = 4.2e-74 Identity = 159/228 (69.74%), Postives = 175/228 (76.75%), Query Frame = 0
BLAST of Carg08049 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 251.5 bits (641), Expect = 6.5e-67 Identity = 148/214 (69.16%), Postives = 163/214 (76.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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