Carg07945 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07945
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mitochondrial import inner membrane translocase
Location	Carg_Chr07: 1831056 .. 1833508 (-)
RNA-Seq Expression	Carg07945
Synteny	Carg07945

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAACCTGCTAATGAAATGAAATAAAATAACCCAAAAAAATACAGCCCCGAAGTTGAGAATCGGAAGCCCAGTTTCGAAACGCGTTATCAAATATAGTTTCTCCGCCTGCATCATTGTAAGAGATCGTCCCTCGAACGGAGCACAGCCATGAAAGATGACTATGAGGTATGGAAATTTCCTCCTTCATAACCCTCGACCTTCTTCATCTTGAACTCTTCATTATGTTCATATGAATCGAGTCCCTTTTATCACACTTATGGCCATTAATTATGCGATCTTGCGCTAAAAATCAAGGTTCTCAAGTCATCCCCCCCTTTTTCCCCCCTCTCCTGTTGATTTTGCAGTTCTCGTCGTCTTAAGGTTATTTCATGGTTAGATCTACTAACTTTGTTCTGCAACAGTTATCGCCTGCTAGAATTTCTGTTATGCAGAATTTTGTGGATTTTGATTCAATCTTTAAAGTTTGAGCTTATTGCTTAGATAGATTTAGCCTTTTTCAACTTTGCTGAGTGGTGACTAGTAACATTCGATATTCTTTATTTCCTTTTTCAATAGTGAGAGTGAAATAGTCATGTTCTTGTAAAAGATGTCGTGAATTACTGTCTTTCTGTAAAAGATTTCGCATCTTTGAAGTGGCGGTCATGAGAAACGAAATCCAGTTAATATAGTGGTGATTGAACGGGTTTAAGATTTAGGATGTTATTTTCCTTTTGAGTTTAGTACATTTCTAAAAAATTCTTTCCGATCCCTAGTTTCTAAGTTACAGAACTTACATTAACTAGCTTTTATTCTATATGGATGCGTTGTTCGTGGAGTTCCTGATTTTGCTACTTTGTTTCTGTCTGAATTTGTTGTAATAATGCTTTCCAGTTTCTACAATTGCCTACTATTATTCAATCCTTTTTTGGTCCCCAGAATTTTCTGAAATTCTGTTGATGCACAGAGAGCTGAGTATGATTTAACTTTTGTAGGATATTTGGTAATATCATGTGCTTAGATTTTGAGCATCAAAAAGTTAGAAATCTGTGTGTCACTAGTTTTGGACCTATTATCGTCCATATTTGATGTCTATATGGAGAAGCCTAGGATTTACTTTAAGGGCATTAGGTCAGTTCTGTTGTTATGCCTAAAGATGGCTTCCTGTTCTAACTGAAGTGTTCATGAGCCATTTGTAATTGAGTTAGGCTTCCTTGCCATCTATGTTTCTGTCTTTTGTGCTGTCGTTCTGATTATAAACATGACAAATTTGCAGACTGATGAGAAAAAACAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCTTGTATTGGTAATCAAGTAAGACCATGCGATTTGAGATTTCATTTGATGAAGGTAAATTTTCCTTCCTTAGACTTCTCATCGATAATTGTAGAATTCCTTTACTTTTGGTTGTGTTTATTTAATAGAATATGATAGAGTAACTTTAGTTTTCCCATTTACATTTATATTGAATTGAGAACAACGCCCATTCTTATCATGAGTTGCACACTTGATCACTCACTTTGTTATCTTTAATTCCTTTGCACTTGAACATTGTTTTCACATAAGAATCTTGGACTTACGTAATAGACTAAAGTGGACAATATCTGCCAACAGTAGTTTTGAGTTGTTACAGTCGTATCTGAGCCAGACACTAGACAGTGTGCCAGCGAGGACGCTGGCCCCAAAGAGGGTAGATTGTGAGATCTAACATCGGTTGGAGAACGGACCGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACTTGTTCTAAAACCAGAGGCCGACGACGATACGTAACAGGCCAAAGTAGACAATATCGGCTAGCGGTGGACTTAGGGTGTATTAGAGGAAAAATTAATACCCAACTCCATTTGTTTAGATTCATGGAAATCTTCCCTTTTGCACCTATTAAGATATCAAACCATAAAAGAACACGGTTGTTGTTTCTTGTTCAGGAGATCTCTGGAATACCAACTTCATTGAAGAGAGAATCGTCCCAACGAGCAGCTTCTCCCGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGACAGCTTTCGAGCGCTGTAATTCGACTCCGAGTTGAATGCCTTCACTGCATATGAGAGTTGCCTGCCTTGTGCAGCCTCCTCTATTCTTTAAATCACAGCGTTCTCGTTAATTGCAGTTGTCTATTTGCTGTTTGCGAAGAGATGGAAACCTTCACTATTTTACATGTAGTTCTTTGAAGCTCTGTATGTTTAATGAGAGTACATGGACCGTTGGATATTAATTGGGCCCGGCCCAATATCTCCTCTCTAATGGGCTTTATCCAATTTGTTCCAAGCTTCGAAACACAAGTAAACATATGTATTTTTAACTTGGAACACATTATTGATCATTTTAATTGTAGAATTTTATTGATTGCTGG

mRNA sequence

TTAACCTGCTAATGAAATGAAATAAAATAACCCAAAAAAATACAGCCCCGAAGTTGAGAATCGGAAGCCCAGTTTCGAAACGCGTTATCAAATATAGTTTCTCCGCCTGCATCATTGTAAGAGATCGTCCCTCGAACGGAGCACAGCCATGAAAGATGACTATGAGACTGATGAGAAAAAACAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCTTGTATTGGTAATCAAGTAAGACCATGCGATTTGAGATTTCATTTGATGAAGGAGATCTCTGGAATACCAACTTCATTGAAGAGAGAATCGTCCCAACGAGCAGCTTCTCCCGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGACAGCTTTCGAGCGCTGTAATTCGACTCCGAGTTGAATGCCTTCACTGCATATGAGAGTTGCCTGCCTTGTGCAGCCTCCTCTATTCTTTAAATCACAGCGTTCTCGTTAATTGCAGTTGTCTATTTGCTGTTTGCGAAGAGATGGAAACCTTCACTATTTTACATGTAGTTCTTTGAAGCTCTGTATGTTTAATGAGAGTACATGGACCGTTGGATATTAATTGGGCCCGGCCCAATATCTCCTCTCTAATGGGCTTTATCCAATTTGTTCCAAGCTTCGAAACACAAGTAAACATATGTATTTTTAACTTGGAACACATTATTGATCATTTTAATTGTAGAATTTTATTGATTGCTGG

Coding sequence (CDS)

ATGAAAGATGACTATGAGACTGATGAGAAAAAACAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCTTGTATTGGTAATCAAGTAAGACCATGCGATTTGAGATTTCATTTGATGAAGGAGATCTCTGGAATACCAACTTCATTGAAGAGAGAATCGTCCCAACGAGCAGCTTCTCCCGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGACAGCTTTCGAGCGCTGTAA

Protein sequence

MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQRAASPDAMGESSSSGTARLDKVDSFRAL

Homology

[Close]

BLAST of Carg07945 vs. NCBI nr
Match: XP_022926304.1 (uncharacterized protein LOC111433498 isoform X2 [Cucurbita moschata] >XP_023003947.1 uncharacterized protein LOC111497388 isoform X3 [Cucurbita maxima] >XP_023517285.1 uncharacterized protein LOC111781091 isoform X3 [Cucurbita pepo subsp. pepo] >KAG7026730.1 hypothetical protein SDJN02_10735 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.0 bits (432), Expect = 4.5e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]

BLAST of Carg07945 vs. NCBI nr
Match: XP_038882825.1 (uncharacterized protein LOC120073967 [Benincasa hispida])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]

BLAST of Carg07945 vs. NCBI nr
Match: XP_008440839.1 (PREDICTED: uncharacterized protein LOC103485143 [Cucumis melo] >KAA0025661.1 uncharacterized protein E6C27_scaffold253G001540 [Cucumis melo var. makuwa] >TYK12534.1 uncharacterized protein E5676_scaffold255G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 3.8e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87

[Close]

BLAST of Carg07945 vs. NCBI nr
Match: XP_022132812.1 (uncharacterized protein LOC111005574 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 4.9e-38
Identity = 84/87 (96.55%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADV+FQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVLFQYSKFVMACIGNQVRPCDLRFHLMKEISGLPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]

BLAST of Carg07945 vs. NCBI nr
Match: XP_004134854.1 (uncharacterized protein LOC101220806 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 8.4e-38
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87

[Close]

BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A6J1KP11 (uncharacterized protein LOC111497388 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497388 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]

BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A6J1EEQ3 (uncharacterized protein LOC111433498 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433498 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]

BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A5A7SN38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001150 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87

[Close]

BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A1S3B238 (uncharacterized protein LOC103485143 OS=Cucumis melo OX=3656 GN=LOC103485143 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87

[Close]

BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A6J1BUW3 (uncharacterized protein LOC111005574 OS=Momordica charantia OX=3673 GN=LOC111005574 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 84/87 (96.55%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADV+FQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVLFQYSKFVMACIGNQVRPCDLRFHLMKEISGLPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]

BLAST of Carg07945 vs. TAIR 10
Match: AT4G35980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 133.3 bits (334), Expect = 9.6e-32
Identity = 66/87 (75.86%), Postives = 73/87 (83.91%), Query Frame = 0


Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          M ++YE DE+KQAAADV+F YSKF MACIGN  RP D+R HLMKEISG+PTSLK   S R
Sbjct: 1  MTEEYEVDEQKQAAADVLFSYSKFAMACIGNHTRPTDMRLHLMKEISGMPTSLKGRDSSR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPD +GESSSSGTARLDK DSFRAL
Sbjct: 61 AASPDPLGESSSSGTARLDKTDSFRAL 87

The following BLAST results are available for this feature:

BLAST of Carg07945 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926304.1	4.5e-39	100.00	uncharacterized protein LOC111433498 isoform X2 [Cucurbita moschata] >XP_0230039...	[more]
XP_038882825.1	1.3e-38	98.85	uncharacterized protein LOC120073967 [Benincasa hispida]	[more]
XP_008440839.1	3.8e-38	97.70	PREDICTED: uncharacterized protein LOC103485143 [Cucumis melo] >KAA0025661.1 unc...	[more]
XP_022132812.1	4.9e-38	96.55	uncharacterized protein LOC111005574 [Momordica charantia]	[more]
XP_004134854.1	8.4e-38	96.55	uncharacterized protein LOC101220806 [Cucumis sativus]	[more]

BLAST of Carg07945 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07945 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KP11	2.2e-39	100.00	uncharacterized protein LOC111497388 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EEQ3	2.2e-39	100.00	uncharacterized protein LOC111433498 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7SN38	1.8e-38	97.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B238	1.8e-38	97.70	uncharacterized protein LOC103485143 OS=Cucumis melo OX=3656 GN=LOC103485143 PE=...	[more]
A0A6J1BUW3	2.4e-38	96.55	uncharacterized protein LOC111005574 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of Carg07945 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35980.1	9.6e-32	75.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..78
None	No IPR available	PANTHER	PTHR48210	FAMILY NOT NAMED	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07945-RA	Carg07945-RA	mRNA