Carg07917 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07917
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	heterogeneous nuclear ribonucleoprotein H2-like isoform X1
Location	Carg_Chr07: 1691214 .. 1691984 (+)
RNA-Seq Expression	Carg07917
Synteny	Carg07917

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGTCGGATTTCAACCATATGGCTATGGGAGTTTTCCTCCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGGCTTCCCTTCAACTGCTCTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTGGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTCGCTGGCTCTGTGCAAGTTGAGTTCGCATTGCAACGGGATCGACAAAATATGGGGCGTAGGTACGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCTATTGCTGCTGAAGTAAACTATGAGGGCATTTATGATAACGACTACCATGGAAGTCCTCCTCCTCGACAAAAGAGGTTCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTGCCTTTCTCTGTGAAAAAATCCGACATTATTGAGTTTTTTGGAGAGTTTGACCTCGCTGAAGATAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGTGAGGCTTACGTTGAGTTTGCTTCAGAAGAGGAGGCAAAGAGAGCAATGAGTAAGGACAAGATGACAATTGGGTCGAGATATGTGGAGTTGTTTCCTTCAACCTCAAATGAGGCTAGAAGAGCTGAGTCAAGGTCAAGACAGTGA

mRNA sequence

ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGTCGGATTTCAACCATATGGCTATGGGAGTTTTCCTCCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGGCTTCCCTTCAACTGCTCTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTGGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTCGCTGGCTCTGTGCAAGTTGAGTTCGCATTGCAACGGGATCGACAAAATATGGGGCGTAGGTACGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCTATTGCTGCTGAAGTAAACTATGAGGGCATTTATGATAACGACTACCATGGAAGTCCTCCTCCTCGACAAAAGAGGTTCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTGCCTTTCTCTGTGAAAAAATCCGACATTATTGAGTTTTTTGGAGAGTTTGACCTCGCTGAAGATAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGTGAGGCTTACGTTGAGTTTGCTTCAGAAGAGGAGGCAAAGAGAGCAATGAGTAAGGACAAGATGACAATTGGGTCGAGATATGTGGAGTTGTTTCCTTCAACCTCAAATGAGGCTAGAAGAGCTGAGTCAAGGTCAAGACAGTGA

Coding sequence (CDS)

ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGTCGGATTTCAACCATATGGCTATGGGAGTTTTCCTCCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGGCTTCCCTTCAACTGCTCTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTGGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTCGCTGGCTCTGTGCAAGTTGAGTTCGCATTGCAACGGGATCGACAAAATATGGGGCGTAGGTACGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCTATTGCTGCTGAAGTAAACTATGAGGGCATTTATGATAACGACTACCATGGAAGTCCTCCTCCTCGACAAAAGAGGTTCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTGCCTTTCTCTGTGAAAAAATCCGACATTATTGAGTTTTTTGGAGAGTTTGACCTCGCTGAAGATAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGTGAGGCTTACGTTGAGTTTGCTTCAGAAGAGGAGGCAAAGAGAGCAATGAGTAAGGACAAGATGACAATTGGGTCGAGATATGTGGAGTTGTTTCCTTCAACCTCAAATGAGGCTAGAAGAGCTGAGTCAAGGTCAAGACAGTGA

Protein sequence

MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELFPSTSNEARRAESRSRQ

Homology

[Close]

BLAST of Carg07917 vs. NCBI nr
Match: KAG6594733.1 (hypothetical protein SDJN03_11286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 515.8 bits (1327), Expect = 2.2e-142
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 353 MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 412

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 413 NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 472

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK
Sbjct: 473 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 532

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF
Sbjct: 533 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 592

Query: 241 PSTSNEARRAESRSRQ 257
           PSTSNEARRAESRSRQ
Sbjct: 593 PSTSNEARRAESRSRQ 608

[Close]

BLAST of Carg07917 vs. NCBI nr
Match: XP_022926595.1 (heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita moschata] >XP_022926596.1 heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita moschata] >XP_022926597.1 heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita moschata] >XP_023518918.1 heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023518919.1 heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515.8 bits (1327), Expect = 2.2e-142
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 187

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTSNEARRAESRSRQ 257
           PSTSNEARRAESRSRQ
Sbjct: 248 PSTSNEARRAESRSRQ 263

[Close]

BLAST of Carg07917 vs. NCBI nr
Match: KAG7026704.1 (Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 515.8 bits (1327), Expect = 2.2e-142
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK
Sbjct: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF
Sbjct: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTSNEARRAESRSRQ 257
           PSTSNEARRAESRSRQ
Sbjct: 241 PSTSNEARRAESRSRQ 256

[Close]

BLAST of Carg07917 vs. NCBI nr
Match: XP_023003923.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita maxima] >XP_023003924.1 heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 511.9 bits (1317), Expect = 3.1e-141
Identity = 254/256 (99.22%), Postives = 254/256 (99.22%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTH FPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHVFPVVRLRGLPF 67

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKR SDKDQMEYTEILKLRGLPFSVKK
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRLSDKDQMEYTEILKLRGLPFSVKK 187

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTSNEARRAESRSRQ 257
           PSTSNEARRAESRSRQ
Sbjct: 248 PSTSNEARRAESRSRQ 263

[Close]

BLAST of Carg07917 vs. NCBI nr
Match: XP_008440908.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo] >XP_016899253.1 PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo])

HSP 1 Score: 504.6 bits (1298), Expect = 5.0e-139
Identity = 250/256 (97.66%), Postives = 252/256 (98.44%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSV K
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           S+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTSNEARRAESRSRQ 257
           PST NEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Carg07917 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 72/202 (35.64%), Postives = 108/202 (53.47%), Query Frame = 0


Query: 52  VVRLRGLPFNCSDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++CS  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +    +              H  P        +       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLK-------------HSGP--------NSADTAND 131

Query: 172 EILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMS 231
             ++LRGLPF   K +II+FF   ++  + I +   P+GK TGEA+V+FAS+E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTSNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Carg07917 vs. ExPASy Swiss-Prot
Match: Q3US41 (Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-26
Identity = 75/208 (36.06%), Postives = 110/208 (52.88%), Query Frame = 0


Query: 52  VVRLRGLPFNCSDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSVQVEFALQR 111
           VVR RGLP+  SD DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284

Query: 112 DRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEI 171
            + +MG RY+EV++   +D+        N                  +F  K   E   I
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSK---ENQVI 344

Query: 172 LKLRGLPFSVKKSDIIEFFGE---FDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAM 231
           +++RGLPF+    +++ FFG+       ++ I   + PDG+ TG+A+V FA EE A+ A+
Sbjct: 345 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 404

Query: 232 SKDKMTIGSRYVELFPSTSNEARRAESR 254
            K K  +G RY+ELF ST+ E ++  +R
Sbjct: 405 RKHKELLGKRYIELFRSTAAEVQQVLNR 414

[Close]

BLAST of Carg07917 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-26
Identity = 71/202 (35.15%), Postives = 107/202 (52.97%), Query Frame = 0


Query: 52  VVRLRGLPFNCSDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++CS  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +    +              H  P        +       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLK-------------HSGP--------NSADSAND 131

Query: 172 EILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMS 231
             ++LRGLPF   K +I++FF   ++  + I +   P+GK TGEA+V+FAS+E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTSNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Carg07917 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-26
Identity = 71/202 (35.15%), Postives = 107/202 (52.97%), Query Frame = 0


Query: 52  VVRLRGLPFNCSDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++CS  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +    +              H  P        +       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLK-------------HSGP--------NSADSAND 131

Query: 172 EILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMS 231
             ++LRGLPF   K +I++FF   ++  + I +   P+GK TGEA+V+FAS+E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTSNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Carg07917 vs. ExPASy Swiss-Prot
Match: Q9Z2X1 (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-26
Identity = 71/202 (35.15%), Postives = 108/202 (53.47%), Query Frame = 0


Query: 52  VVRLRGLPFNCSDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++CS  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +    +              H  P        +       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLK-------------HSGP--------NSADSAND 131

Query: 172 EILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMS 231
             ++LRGLPF   K +I++FF   ++  + I +   P+GK TGEA+V+FAS+E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTSNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Carg07917 vs. ExPASy TrEMBL
Match: A0A6J1EFC5 (heterogeneous nuclear ribonucleoprotein H2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433681 PE=4 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.1e-142
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 187

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTSNEARRAESRSRQ 257
           PSTSNEARRAESRSRQ
Sbjct: 248 PSTSNEARRAESRSRQ 263

[Close]

BLAST of Carg07917 vs. ExPASy TrEMBL
Match: A0A6J1KUQ4 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497369 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.5e-141
Identity = 254/256 (99.22%), Postives = 254/256 (99.22%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTH FPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHVFPVVRLRGLPF 67

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKR SDKDQMEYTEILKLRGLPFSVKK
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRLSDKDQMEYTEILKLRGLPFSVKK 187

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTSNEARRAESRSRQ 257
           PSTSNEARRAESRSRQ
Sbjct: 248 PSTSNEARRAESRSRQ 263

[Close]

BLAST of Carg07917 vs. ExPASy TrEMBL
Match: A0A1S4DTH1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485191 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.4e-139
Identity = 250/256 (97.66%), Postives = 252/256 (98.44%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSV K
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           S+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTSNEARRAESRSRQ 257
           PST NEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Carg07917 vs. ExPASy TrEMBL
Match: A0A0A0KJN7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 3.2e-139
Identity = 249/256 (97.27%), Postives = 252/256 (98.44%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSV K
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           S+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTSNEARRAESRSRQ 257
           PST NEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Carg07917 vs. ExPASy TrEMBL
Match: A0A6J1BYF3 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005858 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.3e-136
Identity = 243/256 (94.92%), Postives = 248/256 (96.88%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPT AFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTPAFPVVRLRGLPF 67

Query: 61  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSMQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 180
           FRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSV K
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 240
           S+I EFFGEFDL EDR+HIASRPDGKATGEAYVEFAS EEAKRAMSKDKM IGSRYVELF
Sbjct: 188 SNITEFFGEFDLTEDRVHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMMIGSRYVELF 247

Query: 241 PSTSNEARRAESRSRQ 257
           PST NEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Carg07917 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 343.6 bits (880), Expect = 1.4e-94
Identity = 175/263 (66.54%), Postives = 207/263 (78.71%), Query Frame = 0


Query: 1   MLGSGGV---SDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRG 60
           M GS G    S GYEVGSKRQRMM+ NPY AV +    F P+GY        FPVVRLRG
Sbjct: 1   MYGSRGAMFGSGGYEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAG-----GFPVVRLRG 60

Query: 61  LPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRY 120
           LPFNC+DIDIF+FFAGL+IVDVLLV+KNG+F GEAFVVFAG +QVE ALQRDR NMGRRY
Sbjct: 61  LPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRY 120

Query: 121 VEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPP----RQKRFSDKDQMEYTEILKLRG 180
           VEVFRC +QDYYNA+AAE   EG Y+ +   SPPP    R KRFS+K+++EYTE+LK+RG
Sbjct: 121 VEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVLKMRG 180

Query: 181 LPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIG 240
           LP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF + EEA+RAM+KDKM+IG
Sbjct: 181 LPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIG 240

Query: 241 SRYVELFPSTSNEARRAESRSRQ 257
           SRYVELFP+T  EARRAE+RSRQ
Sbjct: 241 SRYVELFPTTREEARRAEARSRQ 255

[Close]

BLAST of Carg07917 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-62
Identity = 132/288 (45.83%), Postives = 181/288 (62.85%), Query Frame = 0


Query: 3   GSGGVSDGYEVGSKRQRMME---PNPYFAV-SSSTVGFQPYGYGSFPPTHAFPVVRLRGL 62
           G G   DG E+G KRQRM++   P P++    SS   + PYG+ + PP   FP VRLRGL
Sbjct: 5   GYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGL 64

Query: 63  PFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYV 122
           PF+C+++D+ +FF GLD+VDVL V++N +  GEAF V    +QV+FALQ++RQNMGRRYV
Sbjct: 65  PFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYV 124

Query: 123 EVFRCKRQDYYNAIAAEVNYEGIY--------------------------DNDYHGSPPP 182
           EVFR  +Q+YY AIA EV    ++                               GS P 
Sbjct: 125 EVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPR 184

Query: 183 R---QKRFSD--KDQMEYTEILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKA 242
           R   + R SD  K+ +E+T IL+LRGLPFS  K DI++FF +F+L+ED +H+    +G+ 
Sbjct: 185 RHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRP 244

Query: 243 TGEAYVEFASEEEAKRAMSKDKMTIGSRYVELFPSTSNEARRAESRSR 256
           TGEA+VEF + E+++ AM KD+ T+GSRY+ELFPS+  E   A SR R
Sbjct: 245 TGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of Carg07917 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 212.2 bits (539), Expect = 4.8e-55
Identity = 106/161 (65.84%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 100 VQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPP----RQK 159
           +QVE ALQRDR NMGRRYVEVFRC +QDYYNA+AAE   EG Y+ +   SPPP    R K
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAK 60

Query: 160 RFSDKDQMEYTEILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEF 219
           RFS+K+++EYTE+LK+RGLP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF
Sbjct: 61  RFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEF 120

Query: 220 ASEEEAKRAMSKDKMTIGSRYVELFPSTSNEARRAESRSRQ 257
            + EEA+RAM+KDKM+IGSRYVELFP+T  EARRAE+RSRQ
Sbjct: 121 ETGEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSRQ 158

[Close]

BLAST of Carg07917 vs. TAIR 10
Match: AT5G41690.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 45.8 bits (107), Expect = 6.0e-05
Identity = 49/176 (27.84%), Postives = 84/176 (47.73%), Query Frame = 0


Query: 58  LPFNCSDIDIFKFFAGL-DIVDV-LLVNKNGRFMGEAFVVFAGSVQVEFALQ-RDRQNMG 117
           LP+     +I  FF  + ++V V L+VN  G+ +G  FV FA   + E ALQ ++ + + 
Sbjct: 75  LPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGECLD 134

Query: 118 RRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYH--GSPPPRQKRFSDKDQMEYTEILKLR 177
              + +    ++  Y      ++++ ++D DY    S P  +    ++      E+L + 
Sbjct: 135 NNKIFLDVANKKATYLPPKYCIDHK-VWDKDYRRLESHPIEE---DERPPNSVEEVLFVA 194

Query: 178 GLPFSVKKSDIIEFF---GEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAM 226
            L    K SDI +FF   GE       I +    +GK  G  +VEFAS +E K+A+
Sbjct: 195 NLSPQTKISDIFDFFNCVGEV----VSIRLMVNHEGKHVGYGFVEFASADETKKAL 242

[Close]

BLAST of Carg07917 vs. TAIR 10
Match: AT3G10845.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-04
Identity = 38/157 (24.20%), Postives = 67/157 (42.68%), Query Frame = 0


Query: 80  LLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM---GRRYVEVFRC------KRQDYYN 139
           L+VN  G+ +G+ FV FA + + E AL++ +      G  +++          K +DY  
Sbjct: 214 LIVNHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLG 273

Query: 140 AIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKKSDIIEFFGEF 199
               E   EG+ +  Y      ++  F             +  LP       ++ FF +F
Sbjct: 274 QERDEAAVEGLAETPYFVEEARKKTLF-------------VTNLPPRTSIQRMLYFFQDF 333

Query: 200 DLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSK 228
           ++   R+ +     GK  G  Y EFAS  EA++A+ +
Sbjct: 334 EVV--RVRLIVDQSGKHMGCGYFEFASANEAEKALEQ 355

The following BLAST results are available for this feature:

BLAST of Carg07917 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594733.1	2.2e-142	100.00	hypothetical protein SDJN03_11286, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022926595.1	2.2e-142	100.00	heterogeneous nuclear ribonucleoprotein H2-like isoform X1 [Cucurbita moschata] ...	[more]
KAG7026704.1	2.2e-142	100.00	Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp...	[more]
XP_023003923.1	3.1e-141	99.22	heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita maxima] >XP...	[more]
XP_008440908.1	5.0e-139	97.66	PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo] ...	[more]

BLAST of Carg07917 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5E9J1	1.6e-26	35.64	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]
Q3US41	2.0e-26	36.06	Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 ...	[more]
P52597	2.0e-26	35.15	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	2.0e-26	35.15	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q9Z2X1	2.0e-26	35.15	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=...	[more]

BLAST of Carg07917 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFC5	1.1e-142	100.00	heterogeneous nuclear ribonucleoprotein H2-like isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1KUQ4	1.5e-141	99.22	heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A1S4DTH1	2.4e-139	97.66	heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0KJN7	3.2e-139	97.27	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV...	[more]
A0A6J1BYF3	7.3e-136	94.92	heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Momordica charantia OX=...	[more]

BLAST of Carg07917 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66010.1	1.4e-94	66.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20890.1	1.8e-62	45.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	4.8e-55	65.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G41690.1	6.0e-05	27.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G10845.1	1.0e-04	24.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 52..121 e-value: 4.8E-5 score: 32.8 coord: 168..240 e-value: 4.5E-9 score: 46.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 54..116 e-value: 6.2E-6 score: 26.0 coord: 171..237 e-value: 1.3E-8 score: 34.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 167..244 score: 10.291966
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 152..256 e-value: 7.4E-30 score: 105.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 49..134 e-value: 8.4E-23 score: 82.3
None	No IPR available	PANTHER	PTHR13976:SF71	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 3..256
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 3..256
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 168..240 e-value: 3.7E-29 score: 103.406
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 166..253
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 45..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07917-RA	Carg07917-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding