Carg07905 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07905
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Hydrolase_4 domain-containing protein
Location	Carg_Chr07: 1640104 .. 1641145 (-)
RNA-Seq Expression	Carg07905
Synteny	Carg07905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATACATTTAGAAATTAAATTGTTAGTTGCATCTAGAAGAATATACACTTTGTTAAAGCGAACTGCTGAAGGAAAATCCCATGGCGGCATAGGAACAGCACATCAATGCACCAGAAAGATTCTGGATAATTGTCTCGACGTAACTTCCATTAATTTTTCTATTTCCCTCTTCTGTAGACCATACGATTCTCGAGAAGACGGGCAAGTTTCGATATCGGGAAGTACTTCGTAGGGACTTTTCAATGATCGTGAAACTCTGGACGAGAAACAGCTGCGTCAAAGGAATTATCACTTCGAGGGGCCACCAGCTGGGTTGCCTTTGTTTGCTGCTGTTTTTGTAGCCGTATCTTTTGGTCTCCTCCTTGACTTATGCGGATGATTCTGGATCTGGATATGCTTACTACCGAGTAATGTGTTTATGATTTGTTCATTCGTTGAGGGTTTCGTCGTTGGTTGATTTTGCTGTGGTGGGTTGTTTATGGTGTTTCTTTTTTGGTTTTGCAGATCGAGAAGTGGTTTTGGTGTTTGAGATGCTTGTGGAGCTTCTTTTTGAAGAATGGTGAACTGAATTTTTGACTTGGGATTTCCATTTCTATGAGGTGGAGTGGCTGTCGGGGACTCTTGGAATCGATATGATGGATCAGTTCATCAATTTTGTTATTCGGCCTCCTAGGTACTTTTTTTTTTCTGGTATGCCTTGTTGCTTTGCCGAGTTTTCGCTCTTTTTTTTCACTTCTTGCCAATTTCTTGAGCAATTTATCGAGCTGCTACTCAACTACGTGGCTTTAGTGTAGCCTCTAGTGAGCACAATTCTTCCGTTGAGATCTTTGTTTGTTTCTGAGGTTTGTGAGCAGCGGAATTACTCCGATTAGTCCACTTTTGTCTTCATTTTTTCTTGATGGAGCATCATATTTTTGCTGTACAGGGCGGATTATAACCCTGATCAATATTTATGGGAGAAAAATTTCACTCTCGCGGGTAGAGCATACCAACGACAGGATTTGGAGGCAAGTATGGATGGAAAAATTCTTCCGTAA

mRNA sequence

ATGGTTATACATTTAGAAATTAAATTGTTAGTTGCATCTAGAAGAATATACACTTTGTTAAAGCGAACTGCTGAAGGAAAATCCCATGGCGGCATAGGAACAGCACATCAATGCACCAGAAAGATTCTGGATAATTGTCTCGACGGACTTTTCAATGATCGTGAAACTCTGGACGAGAAACAGCTGCGTCAAAGGAATTATCACTTCGAGGGGCCACCAGCTGGGTTGCCTTTGTTTGCTGCTCCGTATCTTTTGGTCTCCTCCTTGACTTATGCGGATGATTCTGGATCTGGATATGCTTACTACCGAGTGGAGTGGCTGTCGGGGACTCTTGGAATCGATATGATGGATCAGTTCATCAATTTTGTTATTCGGCCTCCTAGGGCGGATTATAACCCTGATCAATATTTATGGGAGAAAAATTTCACTCTCGCGGGTAGAGCATACCAACGACAGGATTTGGAGGCAAGTATGGATGGAAAAATTCTTCCGTAA

Coding sequence (CDS)

ATGGTTATACATTTAGAAATTAAATTGTTAGTTGCATCTAGAAGAATATACACTTTGTTAAAGCGAACTGCTGAAGGAAAATCCCATGGCGGCATAGGAACAGCACATCAATGCACCAGAAAGATTCTGGATAATTGTCTCGACGGACTTTTCAATGATCGTGAAACTCTGGACGAGAAACAGCTGCGTCAAAGGAATTATCACTTCGAGGGGCCACCAGCTGGGTTGCCTTTGTTTGCTGCTCCGTATCTTTTGGTCTCCTCCTTGACTTATGCGGATGATTCTGGATCTGGATATGCTTACTACCGAGTGGAGTGGCTGTCGGGGACTCTTGGAATCGATATGATGGATCAGTTCATCAATTTTGTTATTCGGCCTCCTAGGGCGGATTATAACCCTGATCAATATTTATGGGAGAAAAATTTCACTCTCGCGGGTAGAGCATACCAACGACAGGATTTGGAGGCAAGTATGGATGGAAAAATTCTTCCGTAA

Protein sequence

MVIHLEIKLLVASRRIYTLLKRTAEGKSHGGIGTAHQCTRKILDNCLDGLFNDRETLDEKQLRQRNYHFEGPPAGLPLFAAPYLLVSSLTYADDSGSGYAYYRVEWLSGTLGIDMMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMDGKILP

Homology

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: KAG7026692.1 (hypothetical protein SDJN02_10695, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.4 bits (877), Expect = 2.1e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVIHLEIKLLVASRRIYTLLKRTAEGKSHGGIGTAHQCTRKILDNCLDGLFNDRETLDEK 60
           MVIHLEIKLLVASRRIYTLLKRTAEGKSHGGIGTAHQCTRKILDNCLDGLFNDRETLDEK
Sbjct: 1   MVIHLEIKLLVASRRIYTLLKRTAEGKSHGGIGTAHQCTRKILDNCLDGLFNDRETLDEK 60

Query: 61  QLRQRNYHFEGPPAGLPLFAAPYLLVSSLTYADDSGSGYAYYRVEWLSGTLGIDMMDQFI 120
           QLRQRNYHFEGPPAGLPLFAAPYLLVSSLTYADDSGSGYAYYRVEWLSGTLGIDMMDQFI
Sbjct: 61  QLRQRNYHFEGPPAGLPLFAAPYLLVSSLTYADDSGSGYAYYRVEWLSGTLGIDMMDQFI 120

Query: 121 NFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMDGKILP 165
           NFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMDGKILP
Sbjct: 121 NFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMDGKILP 164

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: KAG7034031.1 (yqkD, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-24
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 80  AAPYLLVSSLTYADDSGSGYAYYRVEWLSGTLGIDMMDQFINFVIRPPRADYNPDQYLWE 139
           A PYLL+ +L  ADDSGSGYAY +    SGT G++M+DQFINFVIRPPRADYNPDQYLWE
Sbjct: 3   AEPYLLLFALLSADDSGSGYAYCQP---SGTSGVNMIDQFINFVIRPPRADYNPDQYLWE 62

Query: 140 KNFTLAGRAYQRQDLE 156
           K FTLAGRAYQRQDLE
Sbjct: 63  KKFTLAGRAYQRQDLE 75

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: KAF9679300.1 (hypothetical protein SADUNF_Sadunf06G0000600 [Salix dunnii])

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-15
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 114 DMMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASM 159
           DM+DQFINFVIRPPRADYNPDQYLWEK+FTLAGR+Y+RQDLEASM
Sbjct: 84  DMIDQFINFVIRPPRADYNPDQYLWEKDFTLAGRSYKRQDLEASM 128

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: PON57688.1 (Alpha/beta hydrolase fold [Parasponia andersonii])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-15
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMD 160
           M+DQFINFVIRPPRA+YNPDQYLWEK+FTLAGRAY+RQDLEASMD
Sbjct: 1   MIDQFINFVIRPPRAEYNPDQYLWEKDFTLAGRAYKRQDLEASMD 45

[Close]

BLAST of Carg07905 vs. NCBI nr
Match: KAE8659803.1 (myb family transcription factor family protein [Hibiscus syriacus])

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-15
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMD 160
           M+DQFINFVIRPPRADYNPDQYLWEK FTLAGR Y+RQDLEASMD
Sbjct: 1   MIDQFINFVIRPPRADYNPDQYLWEKEFTLAGRQYKRQDLEASMD 45

[Close]

BLAST of Carg07905 vs. ExPASy TrEMBL
Match: A0A2P5C9G6 (Alpha/beta hydrolase fold OS=Parasponia andersonii OX=3476 GN=PanWU01x14_172360 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-16
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMD 160
           M+DQFINFVIRPPRA+YNPDQYLWEK+FTLAGRAY+RQDLEASMD
Sbjct: 1   MIDQFINFVIRPPRAEYNPDQYLWEKDFTLAGRAYKRQDLEASMD 45

[Close]

BLAST of Carg07905 vs. ExPASy TrEMBL
Match: A0A7N2R5C7 (Hydrolase_4 domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 40/47 (85.11%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 113 IDMMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMD 160
           I+M+DQFINFVIRPPRA+YNPDQYLWEK+FTLAGR+Y+R+DLEASMD
Sbjct: 6   INMIDQFINFVIRPPRAEYNPDQYLWEKDFTLAGRSYKREDLEASMD 52

[Close]

BLAST of Carg07905 vs. ExPASy TrEMBL
Match: A0A6A2WJZ2 (Myb family transcription factor family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116962pilonHSYRG01114 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEASMD 160
           M+DQFINFVIRPPRADYNPDQYLWEK FTLAGR Y+RQDLEASMD
Sbjct: 1   MIDQFINFVIRPPRADYNPDQYLWEKEFTLAGRQYKRQDLEASMD 45

[Close]

BLAST of Carg07905 vs. ExPASy TrEMBL
Match: A0A6J1EM91 (uncharacterized protein LOC111433838 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433838 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE
Sbjct: 1   MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 41

[Close]

BLAST of Carg07905 vs. ExPASy TrEMBL
Match: A0A6J1EG12 (uncharacterized protein LOC111433838 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433838 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 115 MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE
Sbjct: 1   MMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 41

[Close]

BLAST of Carg07905 vs. TAIR 10
Match: AT4G17150.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 111 LGIDMMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           LGI M+DQFINFVIRPPRA+Y+PDQYLWEK F+L G   +RQDLE
Sbjct: 6   LGIKMIDQFINFVIRPPRAEYDPDQYLWEKEFSLGGTKCKRQDLE 50

[Close]

BLAST of Carg07905 vs. TAIR 10
Match: AT4G17150.2 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 111 LGIDMMDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           LGI M+DQFINFVIRPPRA+Y+PDQYLWEK F+L G   +RQDLE
Sbjct: 6   LGIKMIDQFINFVIRPPRAEYDPDQYLWEKEFSLGGTKCKRQDLE 50

[Close]

BLAST of Carg07905 vs. TAIR 10
Match: AT4G14290.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 8.8e-10
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 116 MDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLEA-SMDGKIL 164
           M+Q +NFVIRPPRA+YNP+  L E+ F L GR YQR+DLE  ++ G IL
Sbjct: 1   MEQLVNFVIRPPRAEYNPEHDLLEQEFLLKGRWYQRKDLEVKNIRGDIL 49

[Close]

BLAST of Carg07905 vs. TAIR 10
Match: AT3G23540.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 116 MDQFINFVIRPPRADYNPDQYLWEKNFTLAGRAYQRQDLE 156
           MDQ +NF+IRPPRA+Y+P+  L EK F + GR YQR+DLE
Sbjct: 1   MDQLVNFIIRPPRAEYDPEHDLLEKKFMMKGRWYQRKDLE 40

The following BLAST results are available for this feature:

BLAST of Carg07905 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026692.1	2.1e-90	100.00	hypothetical protein SDJN02_10695, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7034031.1	3.4e-24	77.63	yqkD, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAF9679300.1	1.3e-15	91.11	hypothetical protein SADUNF_Sadunf06G0000600 [Salix dunnii]	[more]
PON57688.1	1.7e-15	91.11	Alpha/beta hydrolase fold [Parasponia andersonii]	[more]
KAE8659803.1	2.9e-15	91.11	myb family transcription factor family protein [Hibiscus syriacus]	[more]

BLAST of Carg07905 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5C9G6	8.3e-16	91.11	Alpha/beta hydrolase fold OS=Parasponia andersonii OX=3476 GN=PanWU01x14_172360 ...	[more]
A0A7N2R5C7	1.1e-15	85.11	Hydrolase_4 domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A2WJZ2	1.4e-15	91.11	Myb family transcription factor family protein OS=Hibiscus syriacus OX=106335 GN...	[more]
A0A6J1EM91	1.8e-15	100.00	uncharacterized protein LOC111433838 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EG12	1.8e-15	100.00	uncharacterized protein LOC111433838 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Carg07905 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17150.1	6.9e-15	75.56	alpha/beta-Hydrolases superfamily protein	[more]
AT4G17150.2	6.9e-15	75.56	alpha/beta-Hydrolases superfamily protein	[more]
AT4G14290.1	8.8e-10	59.18	alpha/beta-Hydrolases superfamily protein	[more]
AT3G23540.1	2.0e-09	62.50	alpha/beta-Hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43358	ALPHA/BETA-HYDROLASE	coord: 115..156
None	No IPR available	PANTHER	PTHR43358:SF1	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN	coord: 115..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07905-RA	Carg07905-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity