Carg07888 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07888
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SNF1-related protein kinase regulatory subunit beta-2-like
Location	Carg_Chr07: 1581606 .. 1582907 (-)
RNA-Seq Expression	Carg07888
Synteny	Carg07888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAGAGAGAGAGTGAGGGGGGGAAGCGAGGCGTGGGATCAGATTCAGGACTTTGTCAACCATGCCGTGAAGATGATTCCTGTTATCCTTATACCCCATCATCATTGGGCCACCATTCGATCTTCCTAACTCATCGGACAGAACATTAATCTTTTCTTCACTCTGTTTCACAGTTTTTCTCCTTTTCATTTTCCTTCCAATTCTGTAACATGAACGATGAAGCATAGGCCTTCGAGGGTTTCTCTTTGATGTGGTCCCTAATCGCTTGATTTTTATTTTGTTCTTTCTTTTTCTGTGGAGAATCGTTTTCCCCCCATTTTCTTTCTTTTTCGTCCCCCCACAAACGATTCTACAAGTGGGTTTGTTTGTTTGTTTGTTTGTTTTTTTTTAATTTGCTTTCCATTTATCCTTGTTCGTATTAATGGGGAATGTGAACGGGAGAGAAGATGAGGATGGCAACCCATCTGGGGCGGAAGAAGAAGAAGAAGATGAGGAAGTCGGTGGTGGTGGTCAGGGGAGTCTGCCGGATGGCCTGGCGGCACCGCCCGATTCCCACCGTGGCTACCACACCGGCGATCCGCCTGCTGAGCTGATGGGTCATTCCCCTCCTCGTAGTCCTCGCGCCATTCCATCTCCACTGATGTTCACTCCTCAAGTTAGTTCCCTTCACTTTGCCTTTACTTGCGTTTCTGGTTCGATGAAATTGATATCTGTATAATTGGAAATGCCTTTTGTTTCCTTTTCCGCTAAGCTTCTGCGGGGAATCTTGCCCTTTTCGTGTCCTTACTTTTCCTGCACAGTACATGTTTGATTTAAGTCCAACATGAATAAATTGACAATTTGGTGAATCTACAGGGCTATTATTACTACAATTCTTTGTGCAAATTCGATTGATTACCTCTTTCTTTTATTTTCTCATTGGAATCTTGATAGAAAATTGATTTTCTTTGAACTTGTGTAGCTTGTAATTCACTTTGAATGCCTAGAAAGTTTACATCAATGTTCTTCTTTAGTTCTTATCATTGATATTGCTGTAGGTTAGTCTGTGGAATATTCTGTGATATCCATGATTCGAGTTCTATCTTCTTACAGGTACCAGTTGTTCCACTGCCAAGACCTGATGAGGTGCACAACACAAGCCAGTCTTGGATGAATAACAGTTCATGGGTTGATGATGTTAGCACTGAACAAGGAATCCCAACGATGATAACGTGGAGTCATGGAGGCAAGGAAGTAGCTGTTGAGGGATCTTGGGATAACTGGAAAATGAAGTTTGTTTCTCTCTTATCTTGA

mRNA sequence

AGAGAGAGAGAGAGAGAGAGAGTGAGGGGGGGAAGCGAGGCGTGGGATCAGATTCAGGACTTTGTCAACCATGCCGTGAAGATGATTCCTGTTATCCTTATACCCCATCATCATTGGGCCACCATTCGATCTTCCTAACTCATCGGACAGAACATTAATCTTTTCTTCACTCTGTTTCACAGTTTTTCTCCTTTTCATTTTCCTTCCAATTCTGTAACATGAACGATGAAGCATAGGCCTTCGAGGGTTTCTCTTTGATGTGGTCCCTAATCGCTTGATTTTTATTTTGTTCTTTCTTTTTCTGTGGAGAATCGTTTTCCCCCCATTTTCTTTCTTTTTCGTCCCCCCACAAACGATTCTACAAGTGGGTTTGTTTGTTTGTTTGTTTGTTTTTTTTTAATTTGCTTTCCATTTATCCTTGTTCGTATTAATGGGGAATGTGAACGGGAGAGAAGATGAGGATGGCAACCCATCTGGGGCGGAAGAAGAAGAAGAAGATGAGGAAGTCGGTGGTGGTGGTCAGGGGAGTCTGCCGGATGGCCTGGCGGCACCGCCCGATTCCCACCGTGGCTACCACACCGGCGATCCGCCTGCTGAGCTGATGGGTCATTCCCCTCCTCGTAGTCCTCGCGCCATTCCATCTCCACTGATGTTCACTCCTCAAGTACCAGTTGTTCCACTGCCAAGACCTGATGAGGTGCACAACACAAGCCAGTCTTGGATGAATAACAGTTCATGGGTTGATGATGTTAGCACTGAACAAGGAATCCCAACGATGATAACGTGGAGTCATGGAGGCAAGGAAGTAGCTGTTGAGGGATCTTGGGATAACTGGAAAATGAAGTTTGTTTCTCTCTTATCTTGA

Coding sequence (CDS)

ATGGGGAATGTGAACGGGAGAGAAGATGAGGATGGCAACCCATCTGGGGCGGAAGAAGAAGAAGAAGATGAGGAAGTCGGTGGTGGTGGTCAGGGGAGTCTGCCGGATGGCCTGGCGGCACCGCCCGATTCCCACCGTGGCTACCACACCGGCGATCCGCCTGCTGAGCTGATGGGTCATTCCCCTCCTCGTAGTCCTCGCGCCATTCCATCTCCACTGATGTTCACTCCTCAAGTACCAGTTGTTCCACTGCCAAGACCTGATGAGGTGCACAACACAAGCCAGTCTTGGATGAATAACAGTTCATGGGTTGATGATGTTAGCACTGAACAAGGAATCCCAACGATGATAACGTGGAGTCATGGAGGCAAGGAAGTAGCTGTTGAGGGATCTTGGGATAACTGGAAAATGAAGTTTGTTTCTCTCTTATCTTGA

Protein sequence

MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGHSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWSHGGKEVAVEGSWDNWKMKFVSLLS

Homology

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: KAG7026675.1 (SNF1-related protein kinase regulatory subunit beta-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH
Sbjct: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS
Sbjct: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMKFVSLLS 145
           HGGKEVAVEGSWDNWKMKFVSLLS
Sbjct: 121 HGGKEVAVEGSWDNWKMKFVSLLS 144

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: KAG6594709.1 (SNF1-related protein kinase regulatory subunit beta-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285.8 bits (730), Expect = 2.1e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH
Sbjct: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS
Sbjct: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 138

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: XP_023003375.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 2.1e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH
Sbjct: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS
Sbjct: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 138

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: XP_022926790.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita moschata])

HSP 1 Score: 281.2 bits (718), Expect = 5.1e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGA-EEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMG 60
           MGNVNGREDEDGNPSGA EEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMG
Sbjct: 1   MGNVNGREDEDGNPSGAEEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMG 60

Query: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120
           HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW
Sbjct: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120

Query: 121 SHGGKEVAVEGSWDNWKMK 139
           SHGGKEVAVEGSWDNWKMK
Sbjct: 121 SHGGKEVAVEGSWDNWKMK 139

[Close]

BLAST of Carg07888 vs. NCBI nr
Match: XP_023517360.1 (SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.2 bits (718), Expect = 5.1e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEV-GGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMG 60
           MGNVNGREDEDGNPSGAEEEEEDEEV GGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMG
Sbjct: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMG 60

Query: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120
           HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW
Sbjct: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120

Query: 121 SHGGKEVAVEGSWDNWKMK 139
           SHGGKEVAVEGSWDNWKMK
Sbjct: 121 SHGGKEVAVEGSWDNWKMK 139

[Close]

BLAST of Carg07888 vs. ExPASy Swiss-Prot
Match: Q9SCY5 (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-30
Identity = 76/140 (54.29%), Postives = 90/140 (64.29%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDG-LAAPPDSHRGYHTGDPPAELMG 60
           MGNVN RE+ + N + A E+E+ E        +  DG   APP             ELMG
Sbjct: 1   MGNVNAREEANSNNASAVEDEDAEICSREAMSAASDGNHVAPP-------------ELMG 60

Query: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNN-SSWVDDVSTEQGIPTMIT 120
            SPP SPRA  SPLMF PQVPV+PL RPDE+H  + SWM + SS  ++ S EQGIPTMIT
Sbjct: 61  QSPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMIT 120

Query: 121 WSHGGKEVAVEGSWDNWKMK 139
           W HGGKE+AVEGSWDNWK +
Sbjct: 121 WCHGGKEIAVEGSWDNWKTR 127

[Close]

BLAST of Carg07888 vs. ExPASy Swiss-Prot
Match: Q84VQ1 (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.9e-17
Identity = 57/138 (41.30%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGN NG++++    SG  +         GG             S R  H   P ++ M  
Sbjct: 1   MGNANGKDEDAAAGSGGADVTSSSARSNGGD-----------PSARSRHR-RPSSDSMSS 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP SP   PSP +F PQVPV PL R +     +  W N S  V D   EQGIPT+ITW+
Sbjct: 61  SPPGSPARSPSPFLFAPQVPVAPLQRANAPPPNNIQW-NQSQRVFDNPPEQGIPTIITWN 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
            GG +VAVEGSWDNW+ +
Sbjct: 121 QGGNDVAVEGSWDNWRSR 125

[Close]

BLAST of Carg07888 vs. ExPASy TrEMBL
Match: A0A6J1KRL1 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucurbita maxima OX=3661 GN=LOC111497000 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.0e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH
Sbjct: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS
Sbjct: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 138

[Close]

BLAST of Carg07888 vs. ExPASy TrEMBL
Match: A0A6J1EM37 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucurbita moschata OX=3662 GN=LOC111433799 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.5e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGA-EEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMG 60
           MGNVNGREDEDGNPSGA EEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMG
Sbjct: 1   MGNVNGREDEDGNPSGAEEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMG 60

Query: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120
           HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW
Sbjct: 61  HSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITW 120

Query: 121 SHGGKEVAVEGSWDNWKMK 139
           SHGGKEVAVEGSWDNWKMK
Sbjct: 121 SHGGKEVAVEGSWDNWKMK 139

[Close]

BLAST of Carg07888 vs. ExPASy TrEMBL
Match: A0A5D3CKN6 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00280 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.7e-61
Identity = 119/138 (86.23%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDGNPSGA  EEEDEEV GG + SLPDGLAAPPD+H GYH GDPPAELMGH
Sbjct: 1   MGNVNGREDEDGNPSGA--EEEDEEV-GGRRSSLPDGLAAPPDAHLGYHAGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP+SPRAIPSPLMFTPQVPV+PLPRPDEVH++SQSWM+NSSW D+V ++QGIPTMITWS
Sbjct: 61  SPPQSPRAIPSPLMFTPQVPVIPLPRPDEVHSSSQSWMHNSSWFDEVGSDQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 135

[Close]

BLAST of Carg07888 vs. ExPASy TrEMBL
Match: A0A1S3B352 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=3656 GN=LOC103485228 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.7e-61
Identity = 119/138 (86.23%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDGNPSGA  EEEDEEV GG + SLPDGLAAPPD+H GYH GDPPAELMGH
Sbjct: 1   MGNVNGREDEDGNPSGA--EEEDEEV-GGRRSSLPDGLAAPPDAHLGYHAGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP+SPRAIPSPLMFTPQVPV+PLPRPDEVH++SQSWM+NSSW D+V ++QGIPTMITWS
Sbjct: 61  SPPQSPRAIPSPLMFTPQVPVIPLPRPDEVHSSSQSWMHNSSWFDEVGSDQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 135

[Close]

BLAST of Carg07888 vs. ExPASy TrEMBL
Match: A0A0A0KH57 (AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 119/138 (86.23%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGNVNGREDEDGNPSGA  EEEDEEV GG + SLPDGL+ PPD+H GYH GDPPAELMGH
Sbjct: 1   MGNVNGREDEDGNPSGA--EEEDEEV-GGRRSSLPDGLSVPPDAHLGYHAGDPPAELMGH 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP+SPRAIPSPLMFTPQVPVVPLPRPDEVH++SQSWM+NSSW D+V +EQGIPTMITWS
Sbjct: 61  SPPQSPRAIPSPLMFTPQVPVVPLPRPDEVHSSSQSWMHNSSWFDEVGSEQGIPTMITWS 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
           HGGKEVAVEGSWDNWKMK
Sbjct: 121 HGGKEVAVEGSWDNWKMK 135

[Close]

BLAST of Carg07888 vs. TAIR 10
Match: AT4G16360.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-30
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 54  PAELMGHSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNN-SSWVDDVSTEQG 113
           P ELMG SPP SPRA  SPLMF PQVPV+PL RPDE+H  + SWM + SS  ++ S EQG
Sbjct: 12  PPELMGQSPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQG 71

Query: 114 IPTMITWSHGGKEVAVEGSWDNWKMK 139
           IPTMITW HGGKE+AVEGSWDNWK +
Sbjct: 72  IPTMITWCHGGKEIAVEGSWDNWKTR 97

[Close]

BLAST of Carg07888 vs. TAIR 10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-30
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 54  PAELMGHSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNN-SSWVDDVSTEQG 113
           P ELMG SPP SPRA  SPLMF PQVPV+PL RPDE+H  + SWM + SS  ++ S EQG
Sbjct: 14  PPELMGQSPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQG 73

Query: 114 IPTMITWSHGGKEVAVEGSWDNWKMK 139
           IPTMITW HGGKE+AVEGSWDNWK +
Sbjct: 74  IPTMITWCHGGKEIAVEGSWDNWKTR 99

[Close]

BLAST of Carg07888 vs. TAIR 10
Match: AT4G16360.2 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 127.9 bits (320), Expect = 6.7e-30
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 54  PAELMGHSPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNN-SSWVDDVSTEQG 113
           P ELMG SPP SPRA  SPLMF PQVPV+PL RPDE+H  + SWM + SS  ++ S EQG
Sbjct: 12  PPELMGQSPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQG 71

Query: 114 IPTMITWSHGGKEVAVEGSWDNWK 137
           IPTMITW HGGKE+AVEGSWDNWK
Sbjct: 72  IPTMITWCHGGKEIAVEGSWDNWK 95

[Close]

BLAST of Carg07888 vs. TAIR 10
Match: AT5G21170.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-18
Identity = 57/138 (41.30%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGN NG++++    SG  +         GG             S R  H   P ++ M  
Sbjct: 1   MGNANGKDEDAAAGSGGADVTSSSARSNGGD-----------PSARSRHR-RPSSDSMSS 60

Query: 61  SPPRSPRAIPSPLMFTPQVPVVPLPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWS 120
           SPP SP   PSP +F PQVPV PL R +     +  W N S  V D   EQGIPT+ITW+
Sbjct: 61  SPPGSPARSPSPFLFAPQVPVAPLQRANAPPPNNIQW-NQSQRVFDNPPEQGIPTIITWN 120

Query: 121 HGGKEVAVEGSWDNWKMK 139
            GG +VAVEGSWDNW+ +
Sbjct: 121 QGGNDVAVEGSWDNWRSR 125

[Close]

BLAST of Carg07888 vs. TAIR 10
Match: AT5G21170.2 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-12
Identity = 57/175 (32.57%), Postives = 72/175 (41.14%), Query Frame = 0


Query: 1   MGNVNGREDEDGNPSGAEEEEEDEEVGGGGQGSLPDGLAAPPDSHRGYHTGDPPAELMGH 60
           MGN NG++++    SG  +         GG             S R  H   P ++ M  
Sbjct: 1   MGNANGKDEDAAAGSGGADVTSSSARSNGGD-----------PSARSRHR-RPSSDSMSS 60

Query: 61  SPPRSPRAIPSPLMFTPQ-------------------------------------VPVVP 120
           SPP SP   PSP +F PQ                                     VPV P
Sbjct: 61  SPPGSPARSPSPFLFAPQPTLLFHVTSYNICSPMRHLFHCLGLTCVPNGCISCRMVPVAP 120

Query: 121 LPRPDEVHNTSQSWMNNSSWVDDVSTEQGIPTMITWSHGGKEVAVEGSWDNWKMK 139
           L R +     +  W N S  V D   EQGIPT+ITW+ GG +VAVEGSWDNW+ +
Sbjct: 121 LQRANAPPPNNIQW-NQSQRVFDNPPEQGIPTIITWNQGGNDVAVEGSWDNWRSR 162

The following BLAST results are available for this feature:

BLAST of Carg07888 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026675.1	1.5e-76	100.00	SNF1-related protein kinase regulatory subunit beta-2 [Cucurbita argyrosperma su...	[more]
KAG6594709.1	2.1e-73	100.00	SNF1-related protein kinase regulatory subunit beta-2, partial [Cucurbita argyro...	[more]
XP_023003375.1	2.1e-73	100.00	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita maxima]	[more]
XP_022926790.1	5.1e-72	99.28	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita moschata]	[more]
XP_023517360.1	5.1e-72	99.28	SNF1-related protein kinase regulatory subunit beta-2-like [Cucurbita pepo subsp...	[more]

BLAST of Carg07888 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SCY5	2.2e-30	54.29	SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX...	[more]
Q84VQ1	4.9e-17	41.30	SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg07888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRL1	1.0e-73	100.00	SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucurbita maxima O...	[more]
A0A6J1EM37	2.5e-72	99.28	SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucurbita moschata...	[more]
A0A5D3CKN6	5.7e-61	86.23	SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. ...	[more]
A0A1S3B352	5.7e-61	86.23	SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=36...	[more]
A0A0A0KH57	1.3e-60	86.23	AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=3...	[more]

BLAST of Carg07888 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16360.1	5.1e-30	69.77	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.3	5.1e-30	69.77	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.2	6.7e-30	71.43	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT5G21170.1	3.4e-18	41.30	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT5G21170.2	1.3e-12	32.57	5'-AMP-activated protein kinase beta-2 subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032640	AMP-activated protein kinase, glycogen-binding domain	PFAM	PF16561	AMPK1_CBM	coord: 113..138 e-value: 8.6E-8 score: 32.3
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10	Immunoglobulins	coord: 103..143 e-value: 2.4E-5 score: 26.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	PANTHER	PTHR46316:SF2	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2	coord: 1..138
IPR043554	SNF1-related protein kinase regulatory subunit beta	PANTHER	PTHR46316	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1	coord: 1..138
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 111..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07888-RA	Carg07888-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm