Carg07872 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07872
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr07: 1513997 .. 1514907 (+)
RNA-Seq Expression	Carg07872
Synteny	Carg07872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTGGGACAAAGATACCGGGCCAAGACTGTCGGCAGCACCGGCCCAGCCGACGCCCCGGAGACTTCTTGTTCTTGCACAAATTTAAAGATGACACGGAAAAACGTCGGAATGAACATGAACGAACGGTCAATGGAATGAAGGGATTCATTCAGATTCGGGGAGGAAAAGTTGAAGAAAGTTATATAAACCAATCTTGAAAGATTTAACTATTTTAAACTTGGAGTTCCAATTAAAGGAAGTAGCAGCTGGTCTTCGTCCCTTTCTTCGTTTGAAGGCGAAAGTCAGATTATCGGCCATTGAAATTGATCCGCTTCCCGAAGAAATCTGAGAATGAACAACAAAGTCATCTACACCAGCTAAGACGGTTCGTTTTCTCACTACCCTCGTCAATGGAATTTAGAGCGTACAATGTTTTCTTATTTCTTCGGCTATTGATTGATTTTGTGTTTTTCATTTCCGTTTTTCCCTCTTGGATTCAAATACTCAAAAGTAGCAAGAACTGGGAAGGGTGAATCGTTGATTGCGTTTGATTTTTGATTTGATTCTGAATATAAACGTTTGGTTGTGGCCTGCGGGCAACCGTTCAAGAATCCTGATAGATCTTGTTGTTTATGTGATTTATTGTAGTCTACCGATAAACAGGGGGAATGGAATGTGTAATCTGGGATCTGCTTCTTCTTGTTCTACGTTTTGGGTTGTGAGTGCATTAATGACTTGGATGATTCTTTGTTTTGAATGCTATGAGATTCCGTTTTGGCATAGATTACTGTTAATTAGAGCCATATTAGGATTTAGGACGATGCAATCTTGAATGGACATAATTGAGGTTTGTATATTTTTGATAGTATCTACATCTGAGAGAGCCTGATGAACCAACATATTCCATCTACAGGCGGTTGGTTTAG

mRNA sequence

ATGGGCCTGGGACAAAGATACCGGGCCAAGACTGTCGGCAGCACCGGCCCAGCCGACGCCCCGGAGACTTCTTGTTCTTGCACAAATTTAAAGATGACACGGAAAAACGTCGGAATGAACATGAACGAACGGCGAAAGTCAGATTATCGGCCATTGAAATTGATCCGCTTCCCGAAGAAATCTGAGAATGAACAACAAAGTCATCTACACCAGCTAAGACGTCTACCGATAAACAGGGGGAATGGAATGTGTAATCTGGGATCTGCTTCTTCTTGTTCTACGTTTTGGGTTTATCTACATCTGAGAGAGCCTGATGAACCAACATATTCCATCTACAGGCGGTTGGTTTAG

Coding sequence (CDS)

ATGGGCCTGGGACAAAGATACCGGGCCAAGACTGTCGGCAGCACCGGCCCAGCCGACGCCCCGGAGACTTCTTGTTCTTGCACAAATTTAAAGATGACACGGAAAAACGTCGGAATGAACATGAACGAACGGCGAAAGTCAGATTATCGGCCATTGAAATTGATCCGCTTCCCGAAGAAATCTGAGAATGAACAACAAAGTCATCTACACCAGCTAAGACGTCTACCGATAAACAGGGGGAATGGAATGTGTAATCTGGGATCTGCTTCTTCTTGTTCTACGTTTTGGGTTTATCTACATCTGAGAGAGCCTGATGAACCAACATATTCCATCTACAGGCGGTTGGTTTAG

Protein sequence

MGLGQRYRAKTVGSTGPADAPETSCSCTNLKMTRKNVGMNMNERRKSDYRPLKLIRFPKKSENEQQSHLHQLRRLPINRGNGMCNLGSASSCSTFWVYLHLREPDEPTYSIYRRLV

Homology

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BLAST of Carg07872 vs. NCBI nr
Match: KAG7026659.1 (hypothetical protein SDJN02_10662, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.7 bits (618), Expect = 1.6e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MGLGQRYRAKTVGSTGPADAPETSCSCTNLKMTRKNVGMNMNERRKSDYRPLKLIRFPKK 60
           MGLGQRYRAKTVGSTGPADAPETSCSCTNLKMTRKNVGMNMNERRKSDYRPLKLIRFPKK
Sbjct: 1   MGLGQRYRAKTVGSTGPADAPETSCSCTNLKMTRKNVGMNMNERRKSDYRPLKLIRFPKK 60

Query: 61  SENEQQSHLHQLRRLPINRGNGMCNLGSASSCSTFWVYLHLREPDEPTYSIYRRLV 117
           SENEQQSHLHQLRRLPINRGNGMCNLGSASSCSTFWVYLHLREPDEPTYSIYRRLV
Sbjct: 61  SENEQQSHLHQLRRLPINRGNGMCNLGSASSCSTFWVYLHLREPDEPTYSIYRRLV 116

The following BLAST results are available for this feature:

BLAST of Carg07872 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026659.1	1.6e-60	100.00	hypothetical protein SDJN02_10662, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg07872 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07872 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07872 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07872-RA	Carg07872-RA	mRNA