Carg07855 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07855
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 1463339 .. 1464650 (-)
RNA-Seq ExpressionCarg07855
SyntenyCarg07855
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGTAAAAGAAAGAGCTTCCTCTGCTCATGGTGTGTGCCTGCATTGTCAGCCAATTTAGAAGAGGCTTCCAAAGACTTGCCGGTACGTGTGAAAAGATGGTTACCATACTGATACTTGTGAATTTAACACTGATGTAATATAGTGACTTTGTTGAGAATATTATTTGGATATCTTTTAAATTGATATGATATGATAGCAATGGTTTGAGGAATAAAAACTCTTCAATAACTTTTTCTTGTTTTGAAACAATGTCAAAGTTAAGAGTTTGAATTAATTTTTATAAAGCATTTGTATAATTCTATGCGTCTTTTTTCAACTATGATGGTTTGAATTTGTTGGATTCCTGCTACAACATGATAGGGATGGTTTTATTTTTATTATTATTTTCAGTAAAACAGATAGGTTAGGATGAGCTCACTTTGGTCCATCAATTATTTTATTAAAAACGTATTTAAAAAAGATATCCTCTTTATAAAACATTTATAATTAAATACATGGTCAAATACAAAATATTATAACATTTATGAAGCTTATCTTAATTTAAATCATTAAACAAAACATTGTTAGGTATGGTTTGAGAAATGGTGGAAATGTCAGTAGGAAGCTTAAAATTAGCAGCAAAAATTAGCAGAAAAAGAAGAACACATTGAATAGGAGAGGAAGAGGAAGAAAAGGCAAAGACAAAAGAGAAAGTGAAAGGGAATATATGGGTGTGTTTTCTGTCATCAAAAAAGCCTATTCTCATTGGTTTGAACACCGCAGGTGACGGGTGCTTTGGCCTTCAGTTTCTTCAACAACAAGATAGCTGCTGCCACTCCCAGCGCCCCTGCTGCTGATACTGCACTCACTGCCCCTGCAATCACCCGGTGCCTATGGCTACCACTTGCCATGCTTGGATCTGCACACACAATCCAATATTTTTCACTAGATCTTTAAGAATAGAAGAAATCAATCATTAAATGATATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATTACAAATGCACAAGAAGCCAAGAGATTGAACGTCAAATCCACAGGACCCGCCGCCCTTCAAAACATCCTGGCAACGGAGACAAGAAGTAGTGACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCACTCCTCCAATGCTCCTCCAATACACACTCGTGTAGCTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCTTCCAGCGCCGTTGCACACTGTGGCACGTGCGTGCATAA

mRNA sequence

ATGGATCGTAAAAGAAAGAGCTTCCTCTGCTCATGGTGTGTGCCTGCATTGTCAGCCAATTTAGAAGAGGCTTCCAAAGACTTGCCGGTGACGGGTGCTTTGGCCTTCAGTTTCTTCAACAACAAGATAGCTGCTGCCACTCCCAGCGCCCCTGCTGCTGATACTGCACTCACTGCCCCTGCAATCACCCGAAGAAATCAATCATTAAATGATATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATTACAAATGCACAAGAAGCCAAGAGATTGAACGTCAAATCCACAGGACCCGCCGCCCTTCAAAACATCCTGGCAACGGAGACAAGAAGTAGTGACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCACTCCTCCAATGCTCCTCCAATACACACTCGTGTAGCTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCTTCCAGCGCCGTTGCACACTGTGGCACGTGCGTGCATAA

Coding sequence (CDS)

ATGGATCGTAAAAGAAAGAGCTTCCTCTGCTCATGGTGTGTGCCTGCATTGTCAGCCAATTTAGAAGAGGCTTCCAAAGACTTGCCGGTGACGGGTGCTTTGGCCTTCAGTTTCTTCAACAACAAGATAGCTGCTGCCACTCCCAGCGCCCCTGCTGCTGATACTGCACTCACTGCCCCTGCAATCACCCGAAGAAATCAATCATTAAATGATATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATTACAAATGCACAAGAAGCCAAGAGATTGAACGTCAAATCCACAGGACCCGCCGCCCTTCAAAACATCCTGGCAACGGAGACAAGAAGTAGTGACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCACTCCTCCAATGCTCCTCCAATACACACTCGTGTAGCTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCTTCCAGCGCCGTTGCACACTGTGGCACGTGCGTGCATAA

Protein sequence

MDRKRKSFLCSWCVPALSANLEEASKDLPVTGALAFSFFNNKIAAATPSAPAADTALTAPAITRRNQSLNDMIWDTFTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQLQRIHGLGMIRAAGTSFQRRCTLWHVRA
Homology
[Close]
BLAST of Carg07855 vs. NCBI nr
Match: KAG7026644.1 (hypothetical protein SDJN02_10647, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.0 bits (920), Expect = 2.4e-95
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MDRKRKSFLCSWCVPALSANLEEASKDLPVTGALAFSFFNNKIAAATPSAPAADTALTAP 60
           MDRKRKSFLCSWCVPALSANLEEASKDLPVTGALAFSFFNNKIAAATPSAPAADTALTAP
Sbjct: 1   MDRKRKSFLCSWCVPALSANLEEASKDLPVTGALAFSFFNNKIAAATPSAPAADTALTAP 60

Query: 61  AITRRNQSLNDMIWDTFTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNI 120
           AITRRNQSLNDMIWDTFTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNI
Sbjct: 61  AITRRNQSLNDMIWDTFTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNI 120

Query: 121 KINSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQLQRIHGLGMIRAAGTSFQRRCTLW 180
           KINSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQLQRIHGLGMIRAAGTSFQRRCTLW
Sbjct: 121 KINSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQLQRIHGLGMIRAAGTSFQRRCTLW 180

Query: 181 HVRA 185
           HVRA
Sbjct: 181 HVRA 184

[Close]
BLAST of Carg07855 vs. NCBI nr
Match: PON91268.1 (hypothetical protein TorRG33x02_128310, partial [Trema orientale])

HSP 1 Score: 79.0 bits (193), Expect = 4.9e-11
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 0 

Query: 79  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHS 138
           +S  +   T AQE  R+N+K T PA+L +ILA +T  S  N+K+NS+PIF  LII L   
Sbjct: 53  ISCHVCFPTKAQEILRMNIKPTSPASLTHILAPKTTRSHRNLKVNSDPIFRDLIIRL-SC 112

Query: 139 SNAPPIHTRVASAVLEHQLQRIHGLGMIRAAGTS------FQRRCTLWHVRA 185
           ++ PPIH  V   +L+HQ QR+    +IR A +S       +RR TL  V A
Sbjct: 113 ASVPPIHAGVTRTILQHQPQRLGRFRVIRTARSSTTAHSAIRRRATLGQVAA 163

[Close]
BLAST of Carg07855 vs. NCBI nr
Match: PON52123.1 (hypothetical protein PanWU01x14_211130, partial [Parasponia andersonii])

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-10
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 0 

Query: 65  RNQSLNDMIWDT--FTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKI 124
           RN S + M+ +     +S  I   T A E  R+N+K T PA+L +ILA +T  S  N+K+
Sbjct: 37  RNNSNSPMLINAVIVAISCHIFFPTKAHEILRMNIKPTSPASLIHILALKTTRSHWNLKV 96

Query: 125 NSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQLQRIHGLGMIRAA------GTSFQRR 184
           NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A       ++ +RR
Sbjct: 97  NSDPIFRDLIIRL-SCTSVPPIHAGVTRTILQHQPQRLGRFRVIRTARSNTITHSTIRRR 156

[Close]
BLAST of Carg07855 vs. NCBI nr
Match: RDX70635.1 (hypothetical protein CR513_50104, partial [Mucuna pruriens])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-08
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0 

Query: 97  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQ 156
           +KST   + Q ILA +    D NIKINS+PIF  LII    S+N  PI+  + S +LEHQ
Sbjct: 10  IKSTSSTSFQGILALKAAGGDRNIKINSDPIFRDLIIR-HRSANVLPINASITSTILEHQ 69

Query: 157 LQRIHGLGMIRAAGTSFQRR 177
            QR+ G G++RAA T+ +R+
Sbjct: 70  PQRLSGFGIVRAASTARERK 88

[Close]
BLAST of Carg07855 vs. ExPASy TrEMBL
Match: A0A2P5F0F7 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_128310 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 0 

Query: 79  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHS 138
           +S  +   T AQE  R+N+K T PA+L +ILA +T  S  N+K+NS+PIF  LII L   
Sbjct: 53  ISCHVCFPTKAQEILRMNIKPTSPASLTHILAPKTTRSHRNLKVNSDPIFRDLIIRL-SC 112

Query: 139 SNAPPIHTRVASAVLEHQLQRIHGLGMIRAAGTS------FQRRCTLWHVRA 185
           ++ PPIH  V   +L+HQ QR+    +IR A +S       +RR TL  V A
Sbjct: 113 ASVPPIHAGVTRTILQHQPQRLGRFRVIRTARSSTTAHSAIRRRATLGQVAA 163

[Close]
BLAST of Carg07855 vs. ExPASy TrEMBL
Match: A0A2P5BTK1 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_211130 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 0 

Query: 65  RNQSLNDMIWDT--FTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKI 124
           RN S + M+ +     +S  I   T A E  R+N+K T PA+L +ILA +T  S  N+K+
Sbjct: 37  RNNSNSPMLINAVIVAISCHIFFPTKAHEILRMNIKPTSPASLIHILALKTTRSHWNLKV 96

Query: 125 NSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQLQRIHGLGMIRAA------GTSFQRR 184
           NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A       ++ +RR
Sbjct: 97  NSDPIFRDLIIRL-SCTSVPPIHAGVTRTILQHQPQRLGRFRVIRTARSNTITHSTIRRR 156

[Close]
BLAST of Carg07855 vs. ExPASy TrEMBL
Match: A0A371EX53 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_50104 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-09
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0 

Query: 97  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVASAVLEHQ 156
           +KST   + Q ILA +    D NIKINS+PIF  LII    S+N  PI+  + S +LEHQ
Sbjct: 10  IKSTSSTSFQGILALKAAGGDRNIKINSDPIFRDLIIR-HRSANVLPINASITSTILEHQ 69

Query: 157 LQRIHGLGMIRAAGTSFQRR 177
            QR+ G G++RAA T+ +R+
Sbjct: 70  PQRLSGFGIVRAASTARERK 88

The following BLAST results are available for this feature:
BLAST of Carg07855 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026644.12.4e-95100.00hypothetical protein SDJN02_10647, partial [Cucurbita argyrosperma subsp. argyro... [more]
PON91268.14.9e-1142.86hypothetical protein TorRG33x02_128310, partial [Trema orientale][more]
PON52123.14.1e-1039.84hypothetical protein PanWU01x14_211130, partial [Parasponia andersonii][more]
RDX70635.11.0e-0847.50hypothetical protein CR513_50104, partial [Mucuna pruriens][more]
BLAST of Carg07855 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07855 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5F0F72.4e-1142.86Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_128... [more]
A0A2P5BTK12.0e-1039.84Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A371EX534.9e-0947.50Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_50104 P... [more]
BLAST of Carg07855 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07855-RACarg07855-RAmRNA