Carg07835 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07835
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 1393402 .. 1393725 (+)
RNA-Seq ExpressionCarg07835
SyntenyCarg07835
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTGTTCTTGTTAAGAGGTCTAATGGTTACTCCAAGGTTGATAAAGAAGACCCAGATGAGATAATTCATCGAAGAGCACAGTTTATAATCAACAGAGTGTTGGAACGAGCAGATTCCATGGGCAAAGCTTCGTATCTGAGAATTAGAATCCGAAGACTAAGAGTTAGATTTGGAAGAAGATTGAAGAAGCTGAAGAAGAGTATTTGCAATGTCAAGATTAGTGTTTACAAGCAAATAATCTGTCAGATCAGAAACTGCAAGTCTTTGTTTGGCAGAAAAGCAACCAACTTCGCCAATCTACCTCCTCTCTTACCATAA

mRNA sequence

ATGAGTTTTGTTCTTGTTAAGAGGTCTAATGGTTACTCCAAGGTTGATAAAGAAGACCCAGATGAGATAATTCATCGAAGAGCACAGTTTATAATCAACAGAGTGTTGGAACGAGCAGATTCCATGGGCAAAGCTTCGTATCTGAGAATTAGAATCCGAAGACTAAGAGTTAGATTTGGAAGAAGATTGAAGAAGCTGAAGAAGAGTATTTGCAATGTCAAGATTAGTGTTTACAAGCAAATAATCTGTCAGATCAGAAACTGCAAGTCTTTGTTTGGCAGAAAAGCAACCAACTTCGCCAATCTACCTCCTCTCTTACCATAA

Coding sequence (CDS)

ATGAGTTTTGTTCTTGTTAAGAGGTCTAATGGTTACTCCAAGGTTGATAAAGAAGACCCAGATGAGATAATTCATCGAAGAGCACAGTTTATAATCAACAGAGTGTTGGAACGAGCAGATTCCATGGGCAAAGCTTCGTATCTGAGAATTAGAATCCGAAGACTAAGAGTTAGATTTGGAAGAAGATTGAAGAAGCTGAAGAAGAGTATTTGCAATGTCAAGATTAGTGTTTACAAGCAAATAATCTGTCAGATCAGAAACTGCAAGTCTTTGTTTGGCAGAAAAGCAACCAACTTCGCCAATCTACCTCCTCTCTTACCATAA

Protein sequence

MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFGRRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP
Homology
BLAST of Carg07835 vs. NCBI nr
Match: KAG7026625.1 (hypothetical protein SDJN02_10627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 4.8e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG
Sbjct: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP 108
           RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP
Sbjct: 61  RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP 107

BLAST of Carg07835 vs. NCBI nr
Match: KAG6594658.1 (hypothetical protein SDJN03_11211, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIIN+VLERADSMGKASYLRIRIRRLRVRFG
Sbjct: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP 108
           RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP
Sbjct: 61  RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP 107

BLAST of Carg07835 vs. NCBI nr
Match: XP_023003962.1 (uncharacterized protein LOC111497408 [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 2.1e-46
Identity = 102/110 (92.73%), Postives = 104/110 (94.55%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVLVK SNGYSKVDKEDP+EIIHRRAQFIIN+VLERADSMGKASYLRIRIRRLRVRFG
Sbjct: 1   MSFVLVKSSNGYSKVDKEDPEEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLKKLKK    SICNVKISVYKQIICQIRNCKSLFGRK TNFANLPPLL
Sbjct: 61  RRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLL 110

BLAST of Carg07835 vs. NCBI nr
Match: KGN49119.1 (hypothetical protein Csa_003853 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-38
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MS VL KRSNGY KVDKEDP+EIIHRRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLK+LKK    SI  +KI VYKQ+I QIRNCKSLFGRK TNFAN P LL
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLL 110

BLAST of Carg07835 vs. NCBI nr
Match: XP_038883675.1 (uncharacterized protein LOC120074584 [Benincasa hispida])

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-37
Identity = 86/110 (78.18%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVL++R NGYSKVDKEDP+EIIHRRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLKKLKK    SI  +KI VYKQ+I QIRNCKSLFG K T+F N P LL
Sbjct: 61  RRLKKLKKSAMASISTLKIGVYKQVISQIRNCKSLFGPKQTHFPNFPLLL 110

BLAST of Carg07835 vs. ExPASy TrEMBL
Match: A0A6J1KP23 (uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 102/110 (92.73%), Postives = 104/110 (94.55%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVLVK SNGYSKVDKEDP+EIIHRRAQFIIN+VLERADSMGKASYLRIRIRRLRVRFG
Sbjct: 1   MSFVLVKSSNGYSKVDKEDPEEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLKKLKK    SICNVKISVYKQIICQIRNCKSLFGRK TNFANLPPLL
Sbjct: 61  RRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLL 110

BLAST of Carg07835 vs. ExPASy TrEMBL
Match: A0A0A0KJX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MS VL KRSNGY KVDKEDP+EIIHRRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLK+LKK    SI  +KI VYKQ+I QIRNCKSLFGRK TNFAN P LL
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLL 110

BLAST of Carg07835 vs. ExPASy TrEMBL
Match: A0A6J1CLW2 (uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012478 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.8e-36
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSF+L++R NGYSKVDKEDP+EIIHRRAQF+IN+VLERA+SMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFLLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERAESMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLKKLKK    SI   KI VYKQ+I Q+RNCKSLFGRK    ANL P L
Sbjct: 61  RRLKKLKKSALASISAAKIGVYKQVIGQLRNCKSLFGRKEATIANLSPFL 110

BLAST of Carg07835 vs. ExPASy TrEMBL
Match: A0A5D3CMA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006550 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.0e-36
Identity = 84/110 (76.36%), Postives = 92/110 (83.64%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVL KR NGY KVDKEDP+EII RRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           +RLKKLKK    SI  +K+ VYKQ+I QIRN KSLFGRK T FAN P LL
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLL 110

BLAST of Carg07835 vs. ExPASy TrEMBL
Match: A0A1S3B0N9 (uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.0e-36
Identity = 84/110 (76.36%), Postives = 92/110 (83.64%), Query Frame = 0

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVL KR NGY KVDKEDP+EII RRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           +RLKKLKK    SI  +K+ VYKQ+I QIRN KSLFGRK T FAN P LL
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLL 110

BLAST of Carg07835 vs. TAIR 10
Match: AT4G04745.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-12
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 0

Query: 12  YSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLR---------IRIRRLRVRFGRR 71
           Y+K++KEDP E+IHRRAQF+I +VLERADS  +    R         IR+  +R+R G++
Sbjct: 37  YTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIRVVGIRMRIGKK 96

Query: 72  LKKLKKS---ICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPL 106
           L+KL+K+   ICN  I+ + +   +   C S     +   ++LPPL
Sbjct: 97  LRKLRKTNTCICNNLITRFLKSFKRFL-CSSSSSSSSRTISDLPPL 141

BLAST of Carg07835 vs. TAIR 10
Match: AT4G21902.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04745.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 38/112 (33.93%), Postives = 70/112 (62.50%), Query Frame = 0

Query: 5   LVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERAD------SMGKASYLRI---RIRRL 64
           ++K  N Y+K++KED +EIIHRRAQF+I+++L+RAD         + + +++   R+  +
Sbjct: 3   MMKNPNQYTKIEKEDLNEIIHRRAQFLIHKILQRADIETLRQQQKRNTTIKLFSFRVVGI 62

Query: 65  RVRFGRRLKKLKKSICNVKIS--VYKQIICQIRNCKSLFGRKATNFANLPPL 106
           R++ G++L+KL+KS   V  +  +  +++  +R  +  F     N +NLPPL
Sbjct: 63  RMKIGKKLRKLRKSCVMVDKNGDLIPRVLKSLR--RYFFCSSPRNDSNLPPL 112

BLAST of Carg07835 vs. TAIR 10
Match: AT1G11655.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-10
Identity = 30/70 (42.86%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 5  LVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGK----ASYLRIRIRRLRVRFG 64
          L KR   YSK+DKEDP+E++ RRA+F+I + L+ AD + +    +S++R+++  L+V+ G
Sbjct: 3  LFKRPCLYSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIG 62

Query: 65 RRLKKLKKSI 71
          +RL KL++S+
Sbjct: 63 KRLAKLRRSV 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7026625.14.8e-51100.00hypothetical protein SDJN02_10627, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6594658.11.1e-5099.07hypothetical protein SDJN03_11211, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023003962.12.1e-4692.73uncharacterized protein LOC111497408 [Cucurbita maxima][more]
KGN49119.12.1e-3880.00hypothetical protein Csa_003853 [Cucumis sativus][more]
XP_038883675.12.3e-3778.18uncharacterized protein LOC120074584 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KP231.0e-4692.73uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408... [more]
A0A0A0KJX31.0e-3880.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1[more]
A0A6J1CLW22.8e-3675.45uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A5D3CMA48.0e-3676.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B0N98.0e-3676.36uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=... [more]
Match NameE-valueIdentityDescription
AT4G04745.14.7e-1239.62unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G21902.14.4e-1033.93unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G11655.15.7e-1042.86unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35687OS07G0516700 PROTEINcoord: 4..103
NoneNo IPR availablePANTHERPTHR35687:SF1OS07G0516700 PROTEINcoord: 4..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07835-RACarg07835-RAmRNA